Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb375550 Zea mays HOM05D009723 ORTHO05D014671 7.1e-178 627.1 303 100.0
Zm00001eb172310 Zea mays HOM05D009723 ORTHO05D014671 8.6e-67 258.1 295 51.5
Zm00001eb172340 Zea mays HOM05D009723 ORTHO05D014671 2.4e-61 240.0 304 46.4
Zm00001eb376010 Zea mays HOM05D009723 ORTHO05D014671 7.3e-58 228.4 290 45.2
Zm00001eb271340 Zea mays HOM05D009723 ORTHO05D014671 4.7e-57 225.7 291 44.7
Zm00001eb271330 Zea mays HOM05D009723 ORTHO05D014671 6.9e-56 221.9 290 46.9
Zm00001eb271360 Zea mays HOM05D009723 ORTHO05D014671 7.6e-55 218.4 280 45.7
Zm00001eb271380 Zea mays HOM05D009723 ORTHO05D014671 7.6e-55 218.4 291 44.0
Zm00001eb375960 Zea mays HOM05D009723 ORTHO05D014671 7.6e-47 191.8 303 44.6
Zm00001eb373770 Zea mays HOM05D009723 ORTHO05D014671 5.8e-31 139.0 303 38.0
Os06g0161100 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D014671 5.5e-29 132.5 275 36.7
Os06g0162100 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D014671 2.0e-23 114.0 285 34.0
Os05g0345700 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D037178 2.6e-23 113.6 297 33.7
Zm00001eb355600 Zea mays HOM05D009723 ORTHO05D037178 2.2e-22 110.5 289 31.8
Os06g0161800 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D014671 2.5e-21 107.1 294 32.0
Os05g0115500 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D037178 3.0e-19 100.1 288 35.4
Os06g0161900 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D014671 1.1e-18 98.2 294 33.7
Os08g0164300 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D300131 1.1e-18 98.2 312 33.3
Zm00001eb055580 Zea mays HOM05D009723 ORTHO05D445506 5.7e-18 95.9 307 30.6
Zm00001eb376060 Zea mays HOM05D009723 ORTHO05D444291 1.1e-16 91.7 174 37.9
Actinidia08206 Actinidia chinensis HOM05D001102 ORTHO05D001018 5.3e-16 89.4 306 30.1
Manes.01G192400 Manihot esculenta HOM05D001102 ORTHO05D001018 1.3e-14 84.7 311 29.6
Zm00001eb376070 Zea mays HOM05D009723 ORTHO05D446400 1.9e-13 80.9 185 33.0
TWI75G0040 Tripterygium wilfordii HOM05D001102 ORTHO05D001018 2.5e-13 80.5 306 27.8
BraA07t31206Z Brassica rapa HOM05D001102 ORTHO05D001018 4.7e-12 76.3 162 33.3
PGSC0003DMG400022620 Solanum tuberosum HOM05D001102 ORTHO05D001018 4.7e-12 76.3 322 26.7
A07p36340 Brassica napus HOM05D001102 ORTHO05D001018 1.0e-11 75.1 162 32.7
ClCG05G024730 Citrullus lanatus HOM05D001102 ORTHO05D001018 1.8e-11 74.3 301 25.9
BcaB03g14768 Brassica carinata HOM05D001102 ORTHO05D001018 3.0e-11 73.6 162 32.7
Zm00001eb376090 Zea mays HOM05D009723 ORTHO05D445930 3.0e-11 73.6 104 39.4
A02p16220 Brassica napus HOM05D001102 ORTHO05D001018 3.9e-11 73.2 162 33.3
BraA02t06682Z Brassica rapa HOM05D001102 ORTHO05D001018 3.9e-11 73.2 162 33.3
C02p27060 Brassica napus HOM05D001102 ORTHO05D001018 6.7e-11 72.4 162 32.1
Zm00001eb442410 Zea mays HOM05D009723 ORTHO05D441393 8.8e-11 72.0 76 46.1
BcaC03g15142 Brassica carinata HOM05D001102 ORTHO05D001018 1.5e-10 71.2 162 32.1
Carub.0002s1660 Capsella rubella HOM05D001102 ORTHO05D001018 2.0e-10 70.9 169 32.5
Zm00001eb033370 Zea mays HOM05D009723 ORTHO05D445769 3.3e-10 70.1 92 43.5
HanXRQChr08g0209141 Helianthus annuus HOM05D001102 ORTHO05D001018 5.7e-10 69.3 301 29.2
AT1G69900 Arabidopsis thaliana HOM05D001102 ORTHO05D001018 7.4e-10 68.9 157 33.8
CDE08G0266 Ceratophyllum demersum HOM05D001102 ORTHO05D001018 1.7e-09 67.8 290 25.5
BcaB03g11979 Brassica carinata HOM05D001102 ORTHO05D001018 6.3e-09 65.9 284 25.4
ECA247G0142 Erigeron canadensis HOM05D001102 ORTHO05D001018 6.3e-09 65.9 282 28.4
AL22U10080 Arabidopsis lyrata HOM05D001102 ORTHO05D001018 1.1e-08 65.1 158 32.9
Sp5g25010 Schrenkiella parvula HOM05D001102 ORTHO05D001018 1.1e-08 65.1 162 29.6
ECA232G1271 Erigeron canadensis HOM05D001102 ORTHO05D001018 4.1e-08 63.2 297 25.9
BcaC07g39252 Brassica carinata HOM05D001102 ORTHO05D001018 7.0e-08 62.4 283 26.1
Aa31LG4G10910 Aethionema arabicum HOM05D001102 ORTHO05D001018 9.1e-08 62.0 139 33.8
CDE06G1367 Ceratophyllum demersum HOM05D001102 ORTHO05D001018 9.1e-08 62.0 170 32.4
AUR62018299 Chenopodium quinoa HOM05D001102 ORTHO05D001018 2.6e-07 60.5 165 29.7
EL10Ac2g02926 Beta vulgaris HOM05D001102 ORTHO05D001018 3.4e-07 60.1 160 31.9
Ca_00222_v3 Cicer arietinum L. HOM05D001102 ORTHO05D001018 4.5e-07 59.7 164 32.9
BolC8t49892H Brassica oleracea HOM05D001102 ORTHO05D001018 7.7e-07 58.9 283 25.8
Psat1g209640 Pisum sativum HOM05D001102 ORTHO05D001018 7.7e-07 58.9 172 30.2
QL02p080098 Quercus lobata HOM05D001102 ORTHO05D001018 7.7e-07 58.9 205 30.2
QL02p080198 Quercus lobata HOM05D001102 ORTHO05D001018 7.7e-07 58.9 205 30.2
AUR62031657 Chenopodium quinoa HOM05D001102 ORTHO05D001018 1.0e-06 58.5 165 29.1
Ah.10g031210 Amaranthus hybridus HOM05D001102 ORTHO05D001018 1.7e-06 57.8 162 30.2
Nitab4.5_0000408g0120 Nicotiana tabacum HOM05D001102 ORTHO05D001018 1.7e-06 57.8 159 31.4
SGA_v2.0_scaffold224G42957 Striga asiatica HOM05D001102 ORTHO05D001018 1.7e-06 57.8 275 26.5
Phvul.008G044200 Phaseolus vulgaris HOM05D001102 ORTHO05D001018 5.0e-06 56.2 170 32.4


User provided reference genes

Program Settings