Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb374350 Zea mays HOM05D006165 ORTHO05D007122 3.5e-101 371.7 197 100.0
Os06g0188100 Oryza sativa ssp. japonica HOM05D006165 ORTHO05D007122 4.7e-74 281.6 169 86.4
MBI14_g30706_MAGBIO Magnolia biondii HOM05D006165 ORTHO05D007122 3.5e-61 238.8 163 78.5
Thecc.09G009400 Theobroma cacao HOM05D006165 ORTHO05D007122 1.1e-59 233.8 163 74.2
AL7G20440 Arabidopsis lyrata HOM05D006165 ORTHO05D007122 7.3e-59 231.1 163 74.8
Thhalv10025721m.g Eutrema salsugineum HOM05D006165 ORTHO05D007122 9.6e-59 230.7 163 74.8
Carub.0007s0897 Capsella rubella HOM05D006165 ORTHO05D007122 1.3e-58 230.3 163 74.8
TWI63G0193 Tripterygium wilfordii HOM05D006165 ORTHO05D007122 1.3e-58 230.3 163 75.5
CiPaw.08G021000 Carya illinoinensis HOM05D006165 ORTHO05D007122 1.6e-58 229.9 163 74.2
FvH4_2g36601 Fragaria vesca HOM05D006165 ORTHO05D007122 1.6e-58 229.9 166 74.1
Dinv04088 Davidia involucrata HOM05D006165 ORTHO05D007122 2.1e-58 229.6 160 76.2
MD08G1126100 Malus domestica HOM05D006165 ORTHO05D007122 2.8e-58 229.2 163 74.8
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 3.6e-58 228.8 158 75.9
Peaxi162Scf00459g00842 Petunia axillaris HOM05D006165 ORTHO05D007122 4.8e-58 228.4 157 76.4
Aa31LG2G18680 Aethionema arabicum HOM05D006165 ORTHO05D007122 6.2e-58 228.0 163 73.6
AT4G31600 Arabidopsis thaliana HOM05D006165 ORTHO05D007122 6.2e-58 228.0 163 73.0
QL12p025620 Quercus lobata HOM05D006165 ORTHO05D007122 8.1e-58 227.6 163 73.0
RcHm_v2.0_Chr6g0305211 Rosa chinensis HOM05D006165 ORTHO05D007122 1.4e-57 226.9 167 74.3
PGSC0003DMG400029372 Solanum tuberosum HOM05D006165 ORTHO05D007122 1.4e-57 226.9 166 72.9
TAR383G0135 Trochodendron aralioides HOM05D006165 ORTHO05D007122 1.4e-57 226.9 157 75.8
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.8e-57 226.5 158 75.3
PSO782G2746 Papaver somniferum HOM05D006165 ORTHO05D007122 1.8e-57 226.5 158 76.6
BcaB03g12708 Brassica carinata HOM05D006165 ORTHO05D007122 2.4e-57 226.1 163 73.6
Manes.03G005300 Manihot esculenta HOM05D006165 ORTHO05D007122 3.1e-57 225.7 163 73.0
Prupe.1G457700 Prunus persica HOM05D006165 ORTHO05D007122 3.1e-57 225.7 163 74.8
CAN.G947.12 Capsicum annuum HOM05D006165 ORTHO05D007122 4.0e-57 225.3 166 73.5
PGR044G1574 Punica granatum HOM05D006165 ORTHO05D007122 4.0e-57 225.3 163 73.6
Sp7g29430 Schrenkiella parvula HOM05D006165 ORTHO05D007122 4.0e-57 225.3 163 73.0
GSVIVG01033167001 Vitis vinifera HOM05D006165 ORTHO05D007122 5.3e-57 224.9 163 73.6
COL.COLO4_19013 Corchorus olitorius HOM05D006165 ORTHO05D007122 6.9e-57 224.6 153 75.2
Glyma.06G077800 Glycine max HOM05D006165 ORTHO05D007122 6.9e-57 224.6 163 73.6
Aqoxy7G03190 Aquilegia oxysepala HOM05D006165 ORTHO05D007122 9.0e-57 224.2 168 70.8
Cc08_g06570 Coffea canephora HOM05D006165 ORTHO05D007122 9.0e-57 224.2 166 72.9
Gohir.A07G034748 Gossypium hirsutum HOM05D006165 ORTHO05D007122 9.0e-57 224.2 161 72.0
Gorai.001G040400 Gossypium raimondii HOM05D006165 ORTHO05D007122 9.0e-57 224.2 161 72.0
arahy.Tifrunner.gnm1.ann1.IM7VUN Arachis hypogaea HOM05D006165 ORTHO05D007122 1.2e-56 223.8 163 73.0
arahy.Tifrunner.gnm1.ann1.VQZ49N Arachis hypogaea HOM05D006165 ORTHO05D007122 1.2e-56 223.8 163 73.0
A08p18550 Brassica napus HOM05D006165 ORTHO05D007122 1.2e-56 223.8 163 72.4
BraA08t33817Z Brassica rapa HOM05D006165 ORTHO05D007122 1.2e-56 223.8 163 72.4
Ca_15645_v3 Cicer arietinum L. HOM05D006165 ORTHO05D007122 1.2e-56 223.8 163 73.0
Potri.018G009400 Populus trichocarpa HOM05D006165 ORTHO05D007122 1.2e-56 223.8 163 73.6
Sed0016029 Sechium edule HOM05D006165 ORTHO05D007122 1.5e-56 223.4 163 73.0
CiPaw.07G210800 Carya illinoinensis HOM05D006165 ORTHO05D007122 2.0e-56 223.0 163 71.8
Ciclev10008929m.g Citrus clementina HOM05D006165 ORTHO05D007122 2.0e-56 223.0 163 74.8
Gohir.D07G038400 Gossypium hirsutum HOM05D006165 ORTHO05D007122 2.0e-56 223.0 161 71.4
MD15G1105900 Malus domestica HOM05D006165 ORTHO05D007122 2.0e-56 223.0 163 73.6
Sabra18G0016200 Salix brachista HOM05D006165 ORTHO05D007122 2.0e-56 223.0 163 73.0
Sopen12g032200 Solanum pennellii HOM05D006165 ORTHO05D007122 2.0e-56 223.0 157 74.5
Medtr3g109070 Medicago truncatula HOM05D006165 ORTHO05D007122 2.6e-56 222.6 166 71.7
Nn8g40282 Nelumbo nucifera HOM05D006165 ORTHO05D007122 2.6e-56 222.6 161 73.9
Solyc12g096340.2 Solanum lycopersicum HOM05D006165 ORTHO05D007122 2.6e-56 222.6 157 73.9
BolC3t21091H Brassica oleracea HOM05D006165 ORTHO05D007122 3.4e-56 222.2 163 71.8
Cfa013294 Carpinus fangiana HOM05D006165 ORTHO05D007122 5.8e-56 221.5 163 72.4
Lj1g0019857 Lotus japonicus HOM05D006165 ORTHO05D007122 7.6e-56 221.1 167 74.3
BcaC01g01078 Brassica carinata HOM05D006165 ORTHO05D007122 9.9e-56 220.7 163 71.2
C03p87780 Brassica napus HOM05D006165 ORTHO05D007122 9.9e-56 220.7 163 71.2
Duzib168G2215 Durio zibethinus HOM05D006165 ORTHO05D007122 9.9e-56 220.7 191 64.9
Eucgr.C04017 Eucalyptus grandis HOM05D006165 ORTHO05D007122 9.9e-56 220.7 163 73.0
Potri.006G270700 Populus trichocarpa HOM05D006165 ORTHO05D007122 9.9e-56 220.7 163 72.4
Ah.10g024890 Amaranthus hybridus HOM05D006165 ORTHO05D007122 1.3e-55 220.3 163 73.0
ClCG08G012590 Citrullus lanatus HOM05D006165 ORTHO05D007122 1.3e-55 220.3 157 73.9
CsaV3_2G031310 Cucumis sativus L. HOM05D006165 ORTHO05D007122 1.3e-55 220.3 166 71.7
THA.LOC104803627 Tarenaya hassleriana HOM05D006165 ORTHO05D007122 1.3e-55 220.3 163 72.4
vmacro07596 Vaccinium macrocarpon HOM05D006165 ORTHO05D007122 2.2e-55 219.5 158 75.3
MELO3C011179.2 Cucumis melo HOM05D006165 ORTHO05D007122 2.9e-55 219.2 166 71.1
Sc07g0007350 Simmondsia chinensis HOM05D006165 ORTHO05D007122 2.9e-55 219.2 164 72.6
Hma1.2p1_0102F.1_g049850 Hydrangea macrophylla HOM05D006165 ORTHO05D007122 3.8e-55 218.8 162 72.2
ATR0580G193 Amborella trichopoda HOM05D006165 ORTHO05D007122 6.4e-55 218.0 157 73.2
CANSAT21G0300 Cannabis sativa HOM05D006165 ORTHO05D007122 6.4e-55 218.0 163 72.4
CSS0000832 Camellia sinensis var. sinensis HOM05D006165 ORTHO05D007122 8.4e-55 217.6 166 71.1
MSTRG.1617 Avicennia marina HOM05D006165 ORTHO05D007122 4.2e-54 215.3 163 71.2
Nitab4.5_0001159g0150 Nicotiana tabacum HOM05D006165 ORTHO05D007122 4.2e-54 215.3 182 66.5
AUR62037706 Chenopodium quinoa HOM05D006165 ORTHO05D007122 5.4e-54 214.9 163 72.4
VMungo1309G2577 Vigna mungo HOM05D006165 ORTHO05D007122 7.1e-54 214.5 163 71.2
TPR.G12351 Trifolium pratense HOM05D006165 ORTHO05D007122 9.3e-54 214.2 157 72.6
Phvul.009G102300 Phaseolus vulgaris HOM05D006165 ORTHO05D007122 1.2e-53 213.8 163 69.9
SGA_v2.0_scaffold121G33027 Striga asiatica HOM05D006165 ORTHO05D007122 1.2e-53 213.8 158 73.4
unitig_0.g2188 Utricularia gibba HOM05D006165 ORTHO05D007122 1.2e-53 213.8 157 73.2
Lalb_Chr23g0269201 Lupinus albus HOM05D006165 ORTHO05D007122 1.6e-53 213.4 164 68.9
RhsimUnG0021400 Rhododendron simsii HOM05D006165 ORTHO05D007122 2.1e-53 213.0 158 72.8
Sabra06G0210400 Salix brachista HOM05D006165 ORTHO05D007122 2.1e-53 213.0 163 69.9
DCAR_000684 Daucus carota HOM05D006165 ORTHO05D007122 2.7e-53 212.6 163 69.9
EL10Ac2g02421 Beta vulgaris HOM05D006165 ORTHO05D007122 6.0e-53 211.5 163 69.9
Oeu008771.1 Olea europaea HOM05D006165 ORTHO05D007122 1.0e-52 210.7 161 72.0
TWI32G0478 Tripterygium wilfordii HOM05D006165 ORTHO05D007122 1.8e-52 209.9 145 75.9
Lsat_1_v5_gn_5_46160 Lactuca sativa HOM05D006165 ORTHO05D007122 6.7e-52 208.0 158 70.9
unitig_747.g21383 Utricularia gibba HOM05D006165 ORTHO05D007122 1.1e-51 207.2 175 65.7
HanXRQChr03g0081901 Helianthus annuus HOM05D006165 ORTHO05D007122 3.3e-51 205.7 158 71.5
HanXRQChr17g0547151 Helianthus annuus HOM05D006165 ORTHO05D007122 4.3e-51 205.3 158 71.5
ECA240G4065 Erigeron canadensis HOM05D006165 ORTHO05D007122 1.7e-47 193.4 145 72.4
Mapoly0009s0233 Marchantia polymorpha HOM05D006165 ORTHO05D007122 6.5e-47 191.4 157 65.6
SMO351G0409 Selaginella moellendorffii HOM05D006165 ORTHO05D007122 1.0e-44 184.1 141 70.2
Haze_21771 Corylus avellana HOM05D006165 ORTHO05D007122 6.7e-44 181.4 135 71.1
HPP92_015853 Vanilla planifolia HOM05D006165 ORTHO05D007122 3.3e-43 179.1 161 62.1
Nn2g12600 Nelumbo nucifera HOM05D006165 ORTHO05D007122 4.3e-43 178.7 189 55.6
AUR62020293 Chenopodium quinoa HOM05D006165 ORTHO05D007122 1.6e-42 176.8 128 75.0
AagrBONN_evm.TU.Sc2ySwM_344.2498 Anthoceros agrestis HOM05D006165 ORTHO05D007122 5.8e-40 168.3 143 59.4
Actinidia22269 Actinidia chinensis HOM05D006165 ORTHO05D007122 1.7e-39 166.8 161 61.5
Zm00001eb391110 Zea mays HOM05D006165 ORTHO05D007122 1.4e-38 163.7 89 93.3
Zm00001eb422880 Zea mays HOM05D006165 ORTHO05D007122 1.4e-38 163.7 89 93.3
Migut.E01429 Erythranthe guttata HOM05D006165 ORTHO05D007122 2.5e-38 162.9 120 74.2
HPP92_015840 Vanilla planifolia HOM05D006165 ORTHO05D007122 1.6e-37 160.2 118 69.5
Hund02966 Selenicereus undatus HOM05D006165 ORTHO05D007122 3.5e-37 159.1 119 70.6
SalBow8G4770 Salvia bowleyana HOM05D006165 ORTHO05D007122 6.7e-36 154.8 108 76.9
SalBow8G3105 Salvia bowleyana HOM05D006165 ORTHO05D007122 1.5e-35 153.7 117 72.6
Atru.chr7.2611 Acer truncatum HOM05D006165 ORTHO05D007122 1.3e-34 150.6 210 48.6
Mapoly0006s0268 Marchantia polymorpha HOM05D006165 ORTHO05D007122 3.7e-26 122.5 166 42.8
Pp3c25_13780 Physcomitrium patens HOM05D006165 ORTHO05D007122 3.1e-25 119.4 157 42.7
Sed0025542 Sechium edule HOM05D006165 ORTHO05D007122 3.1e-25 119.4 154 51.9
Psat5g023880 Pisum sativum HOM05D006165 ORTHO05D007122 5.3e-25 118.6 157 49.7
Cre17.g703250 Chlamydomonas reinhardtii HOM05D006165 ORTHO05D007122 1.6e-21 107.1 156 40.4
Pp3c7_2020 Physcomitrium patens HOM05D006165 ORTHO05D007122 1.4e-20 104.0 156 38.5
Pp3c11_23500 Physcomitrium patens HOM05D006165 ORTHO05D007122 6.7e-20 101.7 155 39.4
MCO11G920 Micromonas commoda HOM05D006165 ORTHO05D007122 1.4e-17 94.0 144 43.1
CBR_g4355 Chara braunii HOM05D006165 ORTHO05D007122 4.1e-17 92.4 118 42.4
PRCOL_00004919 Prasinoderma coloniale HOM05D006165 ORTHO05D007122 4.2e-14 82.4 162 32.7
Cre16.g666250 Chlamydomonas reinhardtii HOM05D006165 ORTHO05D007122 6.7e-12 75.1 175 32.6
Zm00001eb163870 Zea mays HOM05D006165 ORTHO05D007122 8.8e-12 74.7 40 92.5
PRCOL_00000460 Prasinoderma coloniale HOM05D002754 ORTHO05D007122 1.7e-10 70.5 168 35.1
CBR_g60598 Chara braunii HOM05D002754 ORTHO05D003271 7.0e-09 65.1 151 28.5
CBR_g55067 Chara braunii HOM05D002754 ORTHO05D007122 3.5e-08 62.8 151 27.8
A01p06660 Brassica napus HOM05D000340 ORTHO05D000821 4.5e-08 62.4 66 57.6
CBR_g12209 Chara braunii HOM05D006165 ORTHO05D007122 4.5e-08 62.4 143 33.6
Lj8C450G4 Lonicera japonica HOM05D006165 ORTHO05D007122 3.8e-07 59.3 39 79.5
Nitab4.5_0003963g0030 Nicotiana tabacum HOM05D006165 ORTHO05D007122 3.8e-07 59.3 43 72.1
Phvul.009G092500 Phaseolus vulgaris HOM05D002754 ORTHO05D003271 6.5e-07 58.5 163 30.1
AT2G14695 Arabidopsis thaliana HOM05D002754 ORTHO05D003271 1.5e-06 57.4 170 27.1
BraA01t00624Z Brassica rapa HOM05D000340 ORTHO05D000821 2.5e-06 56.6 39 71.8
SEGI_00400 Sequoiadendron giganteum HOM05D002754 ORTHO05D003271 3.2e-06 56.2 165 29.1
Pp3c11_19580 Physcomitrium patens HOM05D002754 ORTHO05D003271 4.2e-06 55.8 170 28.8
ATR0800G095 Amborella trichopoda HOM05D002754 ORTHO05D003271 5.5e-06 55.5 164 26.8
AL3G46400 Arabidopsis lyrata HOM05D002754 ORTHO05D003271 5.5e-06 55.5 164 26.2
arahy.Tifrunner.gnm1.ann1.0M6L3T Arachis hypogaea HOM05D002754 ORTHO05D003271 5.5e-06 55.5 165 29.1
THA.LOC104803651 Tarenaya hassleriana HOM05D002754 ORTHO05D003271 5.5e-06 55.5 160 28.8
VMungo1309G1247 Vigna mungo HOM05D002754 ORTHO05D003271 7.2e-06 55.1 163 30.1
Sopen08g020930 Solanum pennellii HOM05D002754 ORTHO05D003271 9.4e-06 54.7 163 28.2


User provided reference genes

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