Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 0.0e+00 1870.5 947 100.0
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 0.0e+00 1154.4 1011 63.4
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 4.8e-132 476.5 1104 36.4
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 1.8e-115 421.4 1099 35.1
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 4.1e-107 393.7 1084 34.2
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 4.3e-104 383.6 1064 33.5
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 6.1e-103 379.8 1103 32.5
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 3.1e-102 377.5 1082 34.7
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 5.2e-102 376.7 1098 34.1
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.3e-100 372.1 1097 33.5
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 6.4e-100 369.8 1083 33.2
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 1.1e-99 369.0 1087 33.6
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 1.9e-99 368.2 1054 33.1
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 3.2e-99 367.5 1073 32.5
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 4.1e-99 367.1 1087 34.4
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 3.5e-98 364.0 1068 33.9
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 3.9e-97 360.5 1088 34.0
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 1.1e-96 359.0 1040 33.8
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.5e-96 357.8 1092 32.8
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 5.6e-96 356.7 1085 32.8
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 1.6e-95 355.1 1061 33.6
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.6e-95 355.1 1091 32.8
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.6e-95 355.1 1090 33.0
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 1.4e-94 352.1 1093 32.8
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.4e-94 352.1 1091 32.9
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 1.4e-94 352.1 1112 31.7
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 2.3e-94 351.3 1062 34.2
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.3e-94 351.3 1091 32.6
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.2e-93 349.0 1072 32.6
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 1.5e-93 348.6 1023 32.6
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 2.0e-93 348.2 1027 34.9
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 4.4e-93 347.1 1100 31.8
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 4.4e-93 347.1 1060 32.9
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 5.8e-93 346.7 1063 32.7
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 7.5e-93 346.3 1093 32.8
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 7.5e-93 346.3 1072 32.3
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 9.8e-93 345.9 1039 33.6
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 9.8e-93 345.9 1084 33.2
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 1.3e-92 345.5 1076 33.2
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 2.9e-92 344.4 1069 33.0
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 2.9e-92 344.4 1078 33.7
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 8.3e-92 342.8 1055 33.6
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 8.3e-92 342.8 1066 32.6
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 1.1e-91 342.4 1099 32.4
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 1.9e-91 341.7 1086 33.0
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.9e-91 341.7 1075 32.8
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 3.2e-91 340.9 1069 32.9
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 3.2e-91 340.9 1067 31.3
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 4.1e-91 340.5 1072 33.1
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 7.0e-91 339.7 1078 32.7
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 3.5e-90 337.4 1085 32.8
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 3.5e-90 337.4 1078 32.9
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 7.8e-90 336.3 1051 33.1
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.3e-89 335.5 1045 33.0
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 5.1e-89 333.6 1107 32.3
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 5.1e-89 333.6 1081 32.4
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 1.5e-88 332.0 1126 30.9
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 4.3e-88 330.5 1088 33.1
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 4.3e-88 330.5 1085 33.3
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 1.2e-87 328.9 1026 32.6
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.6e-87 328.6 1065 32.4
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 1.6e-87 328.6 1034 32.9
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 4.7e-87 327.0 1059 32.2
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 8.1e-87 326.2 1104 32.0
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 8.1e-87 326.2 1050 32.2
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 1.4e-86 325.5 1078 32.7
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 2.3e-86 324.7 1064 32.1
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 2.0e-85 321.6 1051 31.7
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.0e-85 321.6 1031 32.9
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 3.4e-85 320.9 1042 31.2
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 7.5e-85 319.7 1030 32.2
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 3.7e-84 317.4 1096 31.4
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 2.4e-83 314.7 1065 30.7
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 4.1e-83 313.9 1006 32.4
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 5.4e-83 313.5 1075 33.0
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.2e-82 312.4 1067 30.4
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 2.1e-82 311.6 1052 32.2
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 2.7e-82 311.2 1066 32.6
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 2.7e-82 311.2 1069 32.6
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 6.0e-82 310.1 1073 30.7
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 2.3e-81 308.1 1033 32.7
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 6.6e-81 306.6 1029 30.0
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 7.3e-80 303.1 1059 32.3
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 9.6e-80 302.8 1069 31.5
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 6.2e-79 300.1 1006 32.2
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 1.8e-78 298.5 1079 31.0
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 1.8e-78 298.5 1029 32.8
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 1.8e-78 298.5 1109 30.8
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 3.1e-78 297.7 1032 32.3
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 8.9e-78 296.2 1026 31.0
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 2.6e-77 294.7 1078 30.5
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 4.4e-77 293.9 1087 31.2
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 5.8e-77 293.5 1014 30.0
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 9.9e-77 292.7 843 32.5
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 1.4e-75 288.9 981 31.2
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 4.2e-75 287.3 1200 29.4
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 9.3e-75 286.2 1025 30.7
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 2.1e-74 285.0 1038 30.5
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 3.5e-74 284.3 1022 31.3
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 1.3e-73 282.3 947 31.0
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 1.7e-73 282.0 1071 29.9
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 3.0e-73 281.2 1033 32.0
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 6.6e-73 280.0 1090 28.8
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 1.9e-72 278.5 1029 31.5
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 3.3e-72 277.7 1028 30.9
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 3.3e-72 277.7 958 30.6
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 5.6e-72 276.9 964 30.8
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 2.1e-71 275.0 1081 30.6
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 3.6e-71 274.2 943 31.5
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 9.0e-70 269.6 1022 31.5
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 3.4e-69 267.7 1027 29.5
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.7e-68 265.4 1043 31.1
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 3.8e-68 264.2 1076 30.4
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 8.4e-68 263.1 1018 31.6
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 3.0e-65 254.6 1018 31.6
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 5.1e-65 253.8 1018 31.6
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 5.1e-65 253.8 1018 31.6
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 1.9e-64 251.9 1008 30.1
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.6e-63 248.8 1053 30.5
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 3.6e-63 247.7 1004 30.8
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 4.8e-63 247.3 1018 30.5
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 8.1e-63 246.5 941 31.3
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 3.4e-61 241.1 1009 29.6
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 5.8e-61 240.4 1006 28.7
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 7.6e-61 240.0 1009 29.5
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 1.7e-60 238.8 480 38.8
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 4.9e-60 237.3 1010 29.5
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.2e-59 234.6 681 33.0
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 7.1e-59 233.4 1049 30.0
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 7.1e-59 233.4 1016 30.2
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 9.3e-59 233.0 1021 30.0
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 2.7e-58 231.5 1024 30.6
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 1.8e-57 228.8 1019 29.2
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 1.9e-56 225.3 887 27.1
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 6.2e-55 220.3 1015 27.9
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 5.3e-54 217.2 1071 28.1
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 2.6e-53 214.9 505 36.8
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 4.5e-53 214.2 820 29.8
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 1.4e-51 209.1 988 28.8
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 1.2e-45 189.5 523 34.6
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 3.4e-45 188.0 599 31.2
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 9.3e-43 179.9 458 36.7
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 3.1e-38 164.9 987 25.7
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 6.3e-31 140.6 625 28.5
SalBow3G3040 Salvia bowleyana HOM05D003611 ORTHO05D004281 1.4e-30 139.4 550 30.0
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 7.7e-29 133.7 185 45.9
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 1.7e-28 132.5 211 47.4
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 1.4e-27 129.4 323 36.8
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 1.0e-25 123.2 662 27.2
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 8.2e-23 113.6 579 26.9
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 2.4e-22 112.1 451 26.2
HPP92_002605 Vanilla planifolia HOM05D046274 ORTHO05D004281 3.1e-22 111.7 382 31.9
TAR374G0905 Trochodendron aralioides HOM05D003611 ORTHO05D004281 8.5e-20 103.6 187 42.2
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 9.4e-19 100.1 1017 24.6
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 3.6e-18 98.2 309 34.0
unitig_22.g6727 Utricularia gibba HOM05D003611 ORTHO05D004281 4.8e-15 87.8 477 27.3
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 6.3e-15 87.4 193 38.3
Actinidia02822 Actinidia chinensis HOM05D003611 ORTHO05D004281 8.2e-15 87.0 210 35.2
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 1.4e-14 86.3 272 33.8
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 3.1e-14 85.1 250 36.8
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 3.1e-14 85.1 270 33.0
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 4.1e-14 84.7 351 29.9
SEGI_21460 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 1.2e-13 83.2 142 39.4
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 5.9e-13 80.9 321 29.6
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.7e-12 79.3 211 33.2
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.9e-12 78.6 298 27.9
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 1.9e-11 75.9 211 32.7
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 5.5e-11 74.3 222 31.1
ATR0661G048 Amborella trichopoda HOM05D003611 ORTHO05D004281 2.7e-10 72.0 198 34.3
Dinv32513 Davidia involucrata HOM05D003611 ORTHO05D004281 6.1e-10 70.9 84 48.8
HPP92_002730 Vanilla planifolia HOM05D046274 ORTHO05D004281 6.1e-10 70.9 329 28.3
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 1.0e-09 70.1 286 31.8
Hma1.2p1_0623F.1_g191005 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 6.8e-09 67.4 127 36.2
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 2.6e-08 65.5 176 34.1
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 8.3e-07 60.5 202 30.2


User provided reference genes

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