Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb373250 Zea mays HOM05D001063 ORTHO05D446806 8.6e-63 243.4 118 100.0
Zm00001eb225560 Zea mays HOM05D001063 ORTHO05D014523 1.6e-21 106.3 66 80.3
Os06g0212300 Oryza sativa ssp. japonica HOM05D001063 ORTHO05D000986 2.9e-10 68.9 44 68.2
Zm00001eb373230 Zea mays HOM05D001063 ORTHO05D000986 4.2e-09 65.1 43 65.1
Os02g0764200 Oryza sativa ssp. japonica HOM05D001063 ORTHO05D000986 7.1e-09 64.3 47 55.3
QL10p017525 Quercus lobata HOM05D001063 ORTHO05D000986 9.3e-09 63.9 53 50.9
GSVIVG01007978001 Vitis vinifera HOM05D001063 ORTHO05D000986 1.6e-08 63.2 50 58.0
Manes.14G080900 Manihot esculenta HOM05D001063 ORTHO05D000986 3.5e-08 62.0 61 49.2
Phvul.009G185700 Phaseolus vulgaris HOM05D001063 ORTHO05D000986 4.6e-08 61.6 49 61.2
VMungo1309G2441 Vigna mungo HOM05D001063 ORTHO05D000986 4.6e-08 61.6 49 59.2
FvH4_5g14640 Fragaria vesca HOM05D001063 ORTHO05D000986 7.9e-08 60.8 47 59.6
FAN08G3445 Fragaria x ananassa HOM05D001063 ORTHO05D000986 7.9e-08 60.8 47 59.6
FAN18G3421 Fragaria x ananassa HOM05D001063 ORTHO05D000986 7.9e-08 60.8 47 59.6
HanXRQChr15g0490141 Helianthus annuus HOM05D001063 ORTHO05D000986 7.9e-08 60.8 52 53.8
Zm00001eb373260 Zea mays HOM05D001063 ORTHO05D000986 7.9e-08 60.8 49 51.0
CiPaw.11G046700 Carya illinoinensis HOM05D001063 ORTHO05D000986 1.0e-07 60.5 47 57.4
Duzib084G1444 Durio zibethinus HOM05D001063 ORTHO05D000986 1.3e-07 60.1 51 52.9
RcHm_v2.0_Chr7g0181851 Rosa chinensis HOM05D001063 ORTHO05D000986 1.3e-07 60.1 47 57.4
RcHm_v2.0_Chr4g0439301 Rosa chinensis HOM05D001063 ORTHO05D000986 1.8e-07 59.7 62 46.8
Thecc.03G093100 Theobroma cacao HOM05D001063 ORTHO05D000986 1.8e-07 59.7 51 51.0
Zm00001eb279130 Zea mays HOM05D001063 ORTHO05D000986 1.8e-07 59.7 50 56.0
CANSAT80G0572 Cannabis sativa HOM05D001063 ORTHO05D000986 2.3e-07 59.3 47 55.3
Lj4g0021182 Lotus japonicus HOM05D001063 ORTHO05D000986 2.3e-07 59.3 50 54.0
MD14G1203600 Malus domestica HOM05D001063 ORTHO05D000986 2.3e-07 59.3 47 55.3
Prupe.5G196900 Prunus persica HOM05D001063 ORTHO05D000986 2.3e-07 59.3 47 57.4
Cfa018919 Carpinus fangiana HOM05D001063 ORTHO05D000986 3.0e-07 58.9 47 57.4
Duzib205G1138 Durio zibethinus HOM05D001063 ORTHO05D000986 3.0e-07 58.9 51 51.0
Os06g0212400 Oryza sativa ssp. japonica HOM05D001063 ORTHO05D000986 3.0e-07 58.9 49 53.1
ECA232G4872 Erigeron canadensis HOM05D001063 ORTHO05D000986 3.9e-07 58.5 45 57.8
Nn3g17287 Nelumbo nucifera HOM05D001063 ORTHO05D000986 3.9e-07 58.5 47 55.3
Nn3g17303 Nelumbo nucifera HOM05D001063 ORTHO05D000986 3.9e-07 58.5 47 55.3
Peaxi162Scf00106g00042 Petunia axillaris HOM05D001063 ORTHO05D000986 3.9e-07 58.5 47 55.3
PGR083G1944 Punica granatum HOM05D001063 ORTHO05D000986 3.9e-07 58.5 45 53.3
CAN.G201.37 Capsicum annuum HOM05D001063 ORTHO05D000986 5.1e-07 58.2 65 44.6
FvH4_4g30950 Fragaria vesca HOM05D001063 ORTHO05D000986 5.1e-07 58.2 61 44.3
FAN07G1471 Fragaria x ananassa HOM05D001063 ORTHO05D000986 5.1e-07 58.2 61 44.3
FAN12G2774 Fragaria x ananassa HOM05D001063 ORTHO05D000986 5.1e-07 58.2 61 44.3
LjContig00102g0027968 Lotus japonicus HOM05D001063 ORTHO05D000986 5.1e-07 58.2 50 54.0
Oeu047004.1 Olea europaea HOM05D001063 ORTHO05D000986 5.1e-07 58.2 49 51.0
VMungo1215G2542 Vigna mungo HOM05D001063 ORTHO05D000986 5.1e-07 58.2 49 55.1
CSS0024671 Camellia sinensis var. sinensis HOM05D001063 ORTHO05D000986 6.7e-07 57.8 45 55.6
Ca_14658_v3 Cicer arietinum L. HOM05D001063 ORTHO05D000986 6.7e-07 57.8 52 53.8
Ca_21812_v3 Cicer arietinum L. HOM05D001063 ORTHO05D000986 6.7e-07 57.8 50 54.0
Cc00_g08400 Coffea canephora HOM05D001063 ORTHO05D000986 6.7e-07 57.8 53 47.2
COL.COLO4_36924 Corchorus olitorius HOM05D001063 ORTHO05D000986 6.7e-07 57.8 51 51.0
Haze_07301 Corylus avellana HOM05D001063 ORTHO05D000986 6.7e-07 57.8 47 55.3
Nitab4.5_0001195g0060 Nicotiana tabacum HOM05D001063 ORTHO05D000986 6.7e-07 57.8 47 53.2
Nitab4.5_0001997g0150 Nicotiana tabacum HOM05D001063 ORTHO05D000986 6.7e-07 57.8 47 53.2
Peaxi162Scf00274g00039 Petunia axillaris HOM05D001063 ORTHO05D000986 6.7e-07 57.8 49 51.0
Psat4g050000 Pisum sativum HOM05D001063 ORTHO05D000986 6.7e-07 57.8 50 56.0
Zm00001eb193680 Zea mays HOM05D001063 ORTHO05D000986 6.7e-07 57.8 54 48.1
FAN22G1748 Fragaria x ananassa HOM05D001063 ORTHO05D000986 8.7e-07 57.4 61 44.3
Glyma.04G166600 Glycine max HOM05D001063 ORTHO05D000986 8.7e-07 57.4 49 57.1
Glyma.05G025400 Glycine max HOM05D001063 ORTHO05D000986 8.7e-07 57.4 49 55.1
Peaxi162Scf00106g00422 Petunia axillaris HOM05D001063 ORTHO05D000986 8.7e-07 57.4 45 55.6
TPR.G11803 Trifolium pratense HOM05D001063 ORTHO05D000986 8.7e-07 57.4 50 54.0
FAN17G2068 Fragaria x ananassa HOM05D001063 ORTHO05D000986 1.1e-06 57.0 61 42.6
Gohir.A07G064300 Gossypium hirsutum HOM05D001063 ORTHO05D000986 1.1e-06 57.0 51 51.0
Gohir.D07G069100 Gossypium hirsutum HOM05D001063 ORTHO05D000986 1.1e-06 57.0 51 51.0
Gorai.001G072600 Gossypium raimondii HOM05D001063 ORTHO05D000986 1.1e-06 57.0 51 51.0
Actinidia31970 Actinidia chinensis HOM05D001063 ORTHO05D000986 1.5e-06 56.6 44 47.7
arahy.Tifrunner.gnm1.ann1.Q1Z3N6 Arachis hypogaea HOM05D001063 ORTHO05D000986 1.5e-06 56.6 50 52.0
arahy.Tifrunner.gnm1.ann1.VE7K9I Arachis hypogaea HOM05D001063 ORTHO05D000986 1.5e-06 56.6 50 52.0
FAN13G1066 Fragaria x ananassa HOM05D001063 ORTHO05D000986 1.5e-06 56.6 47 57.4
Lalb_Chr08g0235541 Lupinus albus HOM05D001063 ORTHO05D000986 1.5e-06 56.6 50 54.0
Os06g0212100 Oryza sativa ssp. japonica HOM05D001063 ORTHO05D000986 1.5e-06 56.6 55 49.1
Psat5g200880 Pisum sativum HOM05D001063 ORTHO05D000986 1.5e-06 56.6 52 50.0
PGSC0003DMG400002109 Solanum tuberosum HOM05D001063 ORTHO05D000986 1.5e-06 56.6 45 51.1
Eucgr.B00531 Eucalyptus grandis HOM05D001063 ORTHO05D000986 1.9e-06 56.2 45 53.3
Medtr4g108780 Medicago truncatula HOM05D001063 ORTHO05D000986 1.9e-06 56.2 50 54.0
Zm00001eb255840 Zea mays HOM05D001063 ORTHO05D000986 1.9e-06 56.2 50 50.0
CAN.G479.70 Capsicum annuum HOM05D001063 ORTHO05D000986 2.5e-06 55.8 49 49.0
Cpa.g.sc341.1 Carica papaya HOM05D001063 ORTHO05D000986 2.5e-06 55.8 44 52.3
Cc04_g15100 Coffea canephora HOM05D001063 ORTHO05D000986 2.5e-06 55.8 53 50.9
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 2.5e-06 55.8 47 51.1
Nitab4.5_0007310g0010 Nicotiana tabacum HOM05D001063 ORTHO05D000986 2.5e-06 55.8 63 44.4
Phvul.003G188901 Phaseolus vulgaris HOM05D001063 ORTHO05D000986 2.5e-06 55.8 49 53.1
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 2.5e-06 55.8 45 48.9
Sopen06g021410 Solanum pennellii HOM05D001063 ORTHO05D000986 2.5e-06 55.8 45 48.9
Aqoxy3G03500 Aquilegia oxysepala HOM05D001063 ORTHO05D000986 3.3e-06 55.5 47 48.9
BraA09t41611Z Brassica rapa HOM05D001063 ORTHO05D000986 3.3e-06 55.5 56 50.0
CDE08G1686 Ceratophyllum demersum HOM05D001063 ORTHO05D000986 3.3e-06 55.5 51 45.1
Nitab4.5_0000256g0180 Nicotiana tabacum HOM05D001063 ORTHO05D000986 3.3e-06 55.5 63 42.9
Nitab4.5_0001211g0230 Nicotiana tabacum HOM05D001063 ORTHO05D000986 3.3e-06 55.5 49 49.0
Rhsim08G0152600 Rhododendron simsii HOM05D001063 ORTHO05D000986 3.3e-06 55.5 47 48.9
MSTRG.23006 Avicennia marina HOM05D001063 ORTHO05D000986 4.3e-06 55.1 45 53.3
Cfa008942 Carpinus fangiana HOM05D001063 ORTHO05D000986 4.3e-06 55.1 47 51.1
Nitab4.5_0005900g0060 Nicotiana tabacum HOM05D001063 ORTHO05D000986 4.3e-06 55.1 49 46.9
Solyc07g047920.3 Solanum lycopersicum HOM05D001063 ORTHO05D000986 4.3e-06 55.1 47 51.1
SGA_v2.0_scaffold313G48338 Striga asiatica HOM05D001063 ORTHO05D000986 4.3e-06 55.1 47 53.2
Actinidia19025 Actinidia chinensis HOM05D001063 ORTHO05D000986 5.6e-06 54.7 47 51.1
BcaC06g34010 Brassica carinata HOM05D001063 ORTHO05D000986 5.6e-06 54.7 62 45.2
A06p43250 Brassica napus HOM05D001063 ORTHO05D000986 5.6e-06 54.7 62 45.2
C07p33720 Brassica napus HOM05D001063 ORTHO05D000986 5.6e-06 54.7 62 45.2
BolC7t43885H Brassica oleracea HOM05D001063 ORTHO05D000986 5.6e-06 54.7 62 45.2
CDE04G2067 Ceratophyllum demersum HOM05D001063 ORTHO05D000986 5.6e-06 54.7 51 45.1
MELO3C001997.2 Cucumis melo HOM05D001063 ORTHO05D000986 5.6e-06 54.7 47 51.1
CsaV3_4G007540 Cucumis sativus L. HOM05D001063 ORTHO05D000986 5.6e-06 54.7 58 46.6
DCAR_016572 Daucus carota HOM05D001063 ORTHO05D000986 5.6e-06 54.7 45 48.9
Medtr3g037560 Medicago truncatula HOM05D001063 ORTHO05D000986 5.6e-06 54.7 44 56.8
PGR102G0457 Punica granatum HOM05D001063 ORTHO05D000986 5.6e-06 54.7 60 46.7
arahy.Tifrunner.gnm1.ann1.1B9W47 Arachis hypogaea HOM05D001063 ORTHO05D000986 7.4e-06 54.3 44 59.1
arahy.Tifrunner.gnm1.ann1.K1YRXQ Arachis hypogaea HOM05D001063 ORTHO05D000986 7.4e-06 54.3 44 59.1
A09p62470 Brassica napus HOM05D001063 ORTHO05D000986 7.4e-06 54.3 56 48.2
CSS0006412 Camellia sinensis var. sinensis HOM05D001063 ORTHO05D000986 7.4e-06 54.3 47 51.1
DCAR_007172 Daucus carota HOM05D001063 ORTHO05D000986 7.4e-06 54.3 45 51.1
Dinv10649 Davidia involucrata HOM05D001063 ORTHO05D000986 7.4e-06 54.3 53 45.3
MBI02_g20484_MAGBIO Magnolia biondii HOM05D001063 ORTHO05D000986 7.4e-06 54.3 52 48.1
Actinidia19028 Actinidia chinensis HOM05D001063 ORTHO05D000986 9.6e-06 53.9 47 46.8
Actinidia19029 Actinidia chinensis HOM05D001063 ORTHO05D000986 9.6e-06 53.9 47 46.8
AL5G12870 Arabidopsis lyrata HOM05D001063 ORTHO05D000986 9.6e-06 53.9 61 44.3
Carub.0005s0214 Capsella rubella HOM05D001063 ORTHO05D000986 9.6e-06 53.9 61 44.3
Lj9A466T79 Lonicera japonica HOM05D001063 ORTHO05D000986 9.6e-06 53.9 44 52.3
Os06g0212500 Oryza sativa ssp. japonica HOM05D001063 ORTHO05D000986 9.6e-06 53.9 50 46.0
Potri.008G090000 Populus trichocarpa HOM05D001063 ORTHO05D000986 9.6e-06 53.9 44 54.5
Sabra08G0067400 Salix brachista HOM05D001063 ORTHO05D000986 9.6e-06 53.9 44 54.5
Sp2g14150 Schrenkiella parvula HOM05D001063 ORTHO05D000986 9.6e-06 53.9 61 44.3
TAR622G1238 Trochodendron aralioides HOM05D001063 ORTHO05D000986 9.6e-06 53.9 43 53.5


User provided reference genes

Program Settings