Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 8.2e-176 621.3 640 100.0
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 8.7e-85 318.9 568 85.4
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 4.8e-43 180.3 565 70.8
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.1e-42 179.1 572 69.8
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.4e-42 178.7 572 69.6
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 3.1e-42 177.6 542 74.4
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 1.6e-41 175.3 568 72.5
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 3.8e-40 170.6 548 71.5
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 3.8e-40 170.6 566 68.6
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 3.2e-39 167.5 546 69.6
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 9.4e-39 166.0 578 70.8
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 1.2e-38 165.6 578 70.6
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 1.6e-38 165.2 546 71.1
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 1.6e-38 165.2 616 65.9
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 2.1e-38 164.9 582 71.1
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 8.0e-38 162.9 541 71.7
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 1.0e-37 162.5 563 62.7
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.0e-37 162.5 557 71.1
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 1.4e-37 162.2 543 71.3
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 3.0e-37 161.0 582 68.9
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 8.8e-37 159.5 543 71.1
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 1.5e-36 158.7 574 69.2
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 2.0e-36 158.3 557 69.7
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.0e-36 158.3 204 47.1
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 2.0e-36 158.3 535 73.6
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.6e-36 157.9 543 70.9
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 3.4e-36 157.5 537 70.8
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 1.3e-35 155.6 169 51.5
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 1.7e-35 155.2 544 73.3
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 2.2e-35 154.8 501 78.8
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.2e-35 154.8 543 71.6
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 1.8e-34 151.8 544 74.1
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 3.1e-34 151.0 166 47.6
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 3.1e-34 151.0 163 51.5
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 4.1e-34 150.6 547 69.7
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 5.4e-34 150.2 164 48.2
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 5.4e-34 150.2 164 48.2
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 7.0e-34 149.8 164 48.2
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 7.0e-34 149.8 164 48.2
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 7.0e-34 149.8 550 72.7
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 9.1e-34 149.4 583 58.3
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 1.6e-33 148.7 565 48.8
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 1.6e-33 148.7 539 71.1
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.7e-33 147.9 208 44.7
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.7e-33 147.9 208 44.7
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 5.9e-33 146.7 168 47.6
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 1.0e-32 146.0 540 70.6
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 1.0e-32 146.0 166 47.0
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 1.0e-32 146.0 166 47.0
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 2.2e-32 144.8 168 46.4
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 2.2e-32 144.8 543 69.4
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 2.2e-32 144.8 198 46.5
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 2.9e-32 144.4 169 47.3
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 2.9e-32 144.4 169 47.3
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 3.8e-32 144.1 161 47.2
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 5.0e-32 143.7 175 45.7
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 6.5e-32 143.3 203 43.3
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 6.5e-32 143.3 539 70.1
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 8.5e-32 142.9 545 69.5
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 1.5e-31 142.1 163 49.7
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 1.5e-31 142.1 190 45.8
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 1.5e-31 142.1 225 44.0
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 1.9e-31 141.7 170 45.3
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 2.5e-31 141.4 219 42.5
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 3.2e-31 141.0 166 45.2
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 3.2e-31 141.0 207 42.0
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 4.2e-31 140.6 179 45.3
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 4.2e-31 140.6 211 45.0
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 5.5e-31 140.2 206 42.7
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 9.5e-31 139.4 169 46.2
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 1.6e-30 138.7 170 48.2
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 1.6e-30 138.7 204 43.1
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 1.6e-30 138.7 207 42.0
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 2.7e-30 137.9 164 49.4
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.7e-30 137.9 164 49.4
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 3.6e-30 137.5 202 43.6
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 4.7e-30 137.1 169 45.6
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 6.1e-30 136.7 158 47.5
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.4e-29 135.6 169 45.6
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 3.0e-29 134.4 162 46.9
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.0e-29 134.4 580 56.4
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 5.2e-29 133.7 155 48.4
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 5.2e-29 133.7 195 43.1
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 6.8e-29 133.3 172 46.5
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 8.8e-29 132.9 550 68.7
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 3.4e-28 131.0 153 46.4
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 4.4e-28 130.6 163 48.5
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 7.5e-28 129.8 169 47.9
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 2.8e-27 127.9 252 39.7
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.4e-26 125.6 192 42.7
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 2.4e-26 124.8 171 45.0
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 3.1e-26 124.4 169 41.4
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.6e-25 122.1 546 69.2
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.0e-25 121.7 183 45.4
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 7.7e-25 119.8 155 43.9
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 1.0e-24 119.4 123 51.2
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 1.3e-24 119.0 551 67.9
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 1.9e-23 115.2 93 60.2
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 2.5e-23 114.8 196 43.4
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 1.6e-22 112.1 102 54.9
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 8.0e-22 109.8 150 44.7
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 1.0e-21 109.4 152 44.1
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 5.2e-21 107.1 565 66.5
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 1.2e-20 105.9 149 42.3
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 1.5e-20 105.5 121 47.1
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 4.4e-20 104.0 162 43.2
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 5.7e-20 103.6 149 41.6
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.7e-19 102.1 212 34.4
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 8.6e-16 89.7 256 82.0
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 8.6e-16 89.7 256 82.0
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.8e-14 84.7 55 74.5
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 8.0e-14 83.2 254 76.0
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 1.4e-13 82.4 63 63.5
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.3e-13 81.6 149 40.3
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 1.2e-12 79.3 123 39.8
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 2.0e-12 78.6 75 50.7
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.2e-10 71.2 156 34.6
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.2e-10 71.2 156 34.6
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 4.1e-10 70.9 452 77.7
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 9.2e-10 69.7 78 70.5
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 4.6e-09 67.4 245 75.5
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 6.0e-09 67.0 566 66.6
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 7.8e-09 66.6 54 53.7


User provided reference genes

Program Settings