Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 1.1e-65 253.1 123 100.0
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 4.0e-31 138.3 85 78.8
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 1.1e-25 120.2 67 83.6
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.1e-25 120.2 75 80.0
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.1e-25 120.2 75 80.0
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 1.9e-25 119.4 66 84.8
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 3.3e-25 118.6 75 78.7
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 4.3e-25 118.2 77 75.3
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 4.3e-25 118.2 75 76.0
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 5.7e-25 117.9 75 77.3
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 5.7e-25 117.9 75 77.3
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 5.7e-25 117.9 75 77.3
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 5.7e-25 117.9 75 77.3
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 5.7e-25 117.9 68 80.9
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 7.4e-25 117.5 80 72.5
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 7.4e-25 117.5 75 76.0
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 7.4e-25 117.5 75 76.0
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 7.4e-25 117.5 75 76.0
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 7.4e-25 117.5 75 77.3
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 9.7e-25 117.1 70 77.1
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 9.7e-25 117.1 68 77.9
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 9.7e-25 117.1 75 74.7
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 1.3e-24 116.7 74 77.0
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 1.3e-24 116.7 67 80.6
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 1.3e-24 116.7 67 82.1
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 1.6e-24 116.3 73 78.1
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 1.6e-24 116.3 66 81.8
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 1.6e-24 116.3 74 75.7
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 2.2e-24 115.9 74 77.0
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 2.2e-24 115.9 74 77.0
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 2.2e-24 115.9 66 81.8
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 2.2e-24 115.9 77 71.4
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 2.8e-24 115.5 74 77.0
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 3.7e-24 115.2 73 76.7
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 3.7e-24 115.2 67 80.6
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 4.8e-24 114.8 75 76.0
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 4.8e-24 114.8 75 74.7
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 4.8e-24 114.8 67 80.6
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 4.8e-24 114.8 74 77.0
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 4.8e-24 114.8 74 74.3
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 8.2e-24 114.0 75 73.3
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 8.2e-24 114.0 75 73.3
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 1.1e-23 113.6 75 76.0
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 1.4e-23 113.2 74 74.3
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 1.8e-23 112.8 74 75.7
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 1.8e-23 112.8 73 74.0
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 1.8e-23 112.8 65 80.0
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 1.8e-23 112.8 65 80.0
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 2.4e-23 112.5 66 80.3
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 2.4e-23 112.5 66 80.3
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 2.4e-23 112.5 74 74.3
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 3.1e-23 112.1 68 75.0
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 3.1e-23 112.1 70 75.7
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 4.1e-23 111.7 74 73.0
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 4.1e-23 111.7 73 71.2
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 5.3e-23 111.3 75 73.3
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 5.3e-23 111.3 75 73.3
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 6.9e-23 110.9 74 74.3
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 6.9e-23 110.9 74 74.3
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 6.9e-23 110.9 74 74.3
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 6.9e-23 110.9 74 74.3
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 6.9e-23 110.9 75 72.0
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 6.9e-23 110.9 67 73.1
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 6.9e-23 110.9 74 71.6
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 6.9e-23 110.9 74 71.6
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 9.0e-23 110.5 75 73.3
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 9.0e-23 110.5 75 73.3
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 9.0e-23 110.5 75 73.3
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 9.0e-23 110.5 75 73.3
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 9.0e-23 110.5 67 76.1
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 9.0e-23 110.5 74 71.6
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 9.0e-23 110.5 74 74.3
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 1.2e-22 110.2 66 75.8
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 1.2e-22 110.2 66 75.8
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 1.5e-22 109.8 75 70.7
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 1.5e-22 109.8 67 76.1
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 1.5e-22 109.8 66 75.8
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 2.0e-22 109.4 73 71.2
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 2.0e-22 109.4 66 75.8
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 2.0e-22 109.4 66 75.8
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 2.0e-22 109.4 74 73.0
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 2.0e-22 109.4 74 73.0
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 2.0e-22 109.4 66 75.8
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 2.0e-22 109.4 66 75.8
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 2.0e-22 109.4 74 70.3
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 2.0e-22 109.4 66 75.8
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 2.0e-22 109.4 75 72.0
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 2.0e-22 109.4 75 72.0
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 2.6e-22 109.0 66 74.2
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 2.6e-22 109.0 66 74.2
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 2.6e-22 109.0 66 74.2
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 2.6e-22 109.0 66 74.2
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 2.6e-22 109.0 66 74.2
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 2.6e-22 109.0 66 75.8
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 2.6e-22 109.0 75 70.7
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 2.6e-22 109.0 75 70.7
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 2.6e-22 109.0 74 73.0
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 3.4e-22 108.6 75 72.0
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 3.4e-22 108.6 75 69.3
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 4.5e-22 108.2 66 74.2
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 4.5e-22 108.2 68 73.5
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 7.6e-22 107.5 74 70.3
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 1.0e-21 107.1 75 69.3
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 1.3e-21 106.7 74 70.3
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 1.3e-21 106.7 74 70.3
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 1.3e-21 106.7 67 73.1
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 1.3e-21 106.7 75 69.3
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 2.2e-21 105.9 75 68.0
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 2.9e-21 105.5 67 73.1
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 3.8e-21 105.1 67 71.6
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 8.5e-21 104.0 67 71.6
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.4e-20 103.2 67 70.1
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.9e-20 102.8 67 73.1
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 2.5e-20 102.4 66 71.2
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 5.5e-20 101.3 67 68.7
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 5.5e-20 101.3 74 66.2
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 2.1e-19 99.4 60 71.7
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 2.7e-19 99.0 112 49.1
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 3.6e-19 98.6 67 70.1
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 1.4e-18 96.7 70 64.3
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 1.9e-17 92.8 68 63.2
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 4.8e-16 88.2 68 57.4
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 1.4e-15 86.7 59 67.8
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 9.1e-15 84.0 121 41.3
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 4.5e-14 81.6 58 72.4
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 5.9e-14 81.3 49 73.5
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 3.8e-13 78.6 63 66.7
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.2e-12 75.5 66 60.6
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 8.8e-10 67.4 68 42.6
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 1.7e-08 63.2 42 66.7
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 1.1e-07 60.5 34 76.5
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 5.3e-07 58.2 39 79.5
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 5.9e-06 54.7 36 61.1


User provided reference genes

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