Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 0.0e+00 1182.9 666 100.0
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 3.7e-304 1047.7 706 86.3
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 3.7e-272 941.4 710 76.6
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 2.8e-179 632.9 722 56.9
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 2.7e-174 616.3 718 56.5
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 3.6e-174 615.9 710 56.2
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.0e-173 614.4 696 56.0
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 5.7e-172 608.6 718 55.3
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.7e-171 607.1 710 57.0
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.2e-171 606.7 714 55.9
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 2.2e-171 606.7 708 55.4
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.8e-171 605.5 707 55.7
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 4.8e-171 605.5 707 55.6
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 1.4e-170 604.0 723 54.6
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-170 603.2 719 55.4
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 2.4e-170 603.2 718 54.7
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 4.5e-169 599.0 711 55.6
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 1.7e-168 597.0 694 54.8
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 2.3e-168 596.7 704 55.4
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.3e-168 596.7 765 52.0
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 2.9e-168 596.3 708 55.5
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.5e-167 594.0 688 54.9
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.5e-167 594.0 724 53.7
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.5e-167 593.2 733 54.7
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.2e-167 592.8 708 55.5
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 1.6e-166 590.5 724 54.0
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 6.1e-166 588.6 704 54.7
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.0e-165 587.8 699 54.8
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 1.2e-164 584.3 720 53.1
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.5e-164 583.9 720 53.2
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 2.0e-164 583.6 731 53.1
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.6e-164 583.2 577 61.0
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.4e-164 582.4 717 55.1
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 7.5e-164 581.6 708 55.2
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 9.8e-164 581.3 480 70.0
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 2.8e-163 579.7 728 53.0
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.8e-163 579.7 531 65.3
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.9e-163 578.9 713 53.9
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.8e-162 577.0 723 53.0
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.8e-162 577.0 712 52.4
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 3.5e-161 572.8 715 54.5
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.5e-161 572.4 719 53.4
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 4.5e-161 572.4 743 51.4
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 5.9e-161 572.0 722 53.2
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.3e-160 570.1 770 51.7
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 5.0e-160 568.9 704 52.3
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 5.0e-160 568.9 679 54.8
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 5.0e-160 568.9 715 53.1
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 6.6e-160 568.5 706 51.6
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.1e-159 567.8 732 52.5
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.5e-159 567.4 712 53.1
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 1.2e-158 564.3 709 52.9
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 4.7e-158 562.4 715 53.3
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.1e-158 562.0 694 53.0
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.2e-156 557.8 712 52.5
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 9.8e-156 554.7 699 51.6
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.3e-155 554.3 728 50.0
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.1e-154 551.2 709 50.4
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.4e-154 550.8 704 53.4
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.8e-154 550.4 700 52.3
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.6e-153 547.4 712 51.8
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.7e-153 546.6 705 50.6
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 5.9e-153 545.4 709 52.0
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.2e-150 537.7 722 50.8
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.4e-149 534.3 708 51.8
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.8e-149 533.9 694 51.4
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 1.8e-149 533.9 717 50.8
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 3.1e-149 533.1 728 49.5
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 3.1e-149 533.1 724 50.3
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 6.8e-149 531.9 725 51.2
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.2e-148 531.2 750 48.8
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.4e-148 529.3 746 50.7
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 2.9e-147 526.6 686 51.9
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.4e-146 523.5 707 49.9
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 5.4e-146 522.3 453 66.4
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 9.2e-146 521.5 714 48.9
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 3.0e-144 516.5 706 50.0
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.5e-143 514.2 655 52.7
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.6e-142 510.8 701 49.9
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.2e-142 508.8 670 50.4
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 5.2e-141 505.8 727 49.2
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.2e-140 504.6 718 47.8
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.0e-140 503.8 732 49.2
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 5.8e-140 502.3 704 49.0
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 9.9e-140 501.5 732 48.9
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.9e-140 501.5 729 49.1
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 4.9e-139 499.2 746 49.7
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 4.9e-139 499.2 694 50.0
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 2.4e-138 496.9 714 48.9
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.2e-137 494.6 720 48.9
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 2.1e-137 493.8 715 49.7
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.8e-137 491.9 743 48.2
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 7.8e-137 491.9 718 49.3
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.3e-136 490.3 396 70.5
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.0e-136 490.0 799 45.8
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 3.3e-135 486.5 714 47.6
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 2.0e-132 477.2 631 51.5
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 9.9e-132 474.9 746 46.1
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.7e-131 474.2 704 48.9
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 2.1e-129 467.2 757 46.2
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 2.8e-126 456.8 736 46.2
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.7e-126 456.1 735 45.4
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.4e-125 454.5 743 46.0
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 7.1e-122 442.2 609 50.2
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 9.3e-114 415.2 672 46.1
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 6.0e-113 412.5 446 58.1
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 6.2e-110 402.5 662 45.2
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.3e-104 384.8 659 44.6
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 2.4e-93 347.4 708 39.7
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 2.3e-88 330.9 525 45.9
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.8e-80 304.7 236 71.6
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.4e-79 299.3 490 45.5
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.3e-78 298.5 230 72.6
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 6.3e-78 296.2 490 45.3
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.9e-74 284.6 231 69.3
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.4e-71 272.7 212 71.2
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.4e-71 272.7 212 71.2
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.7e-70 270.4 232 66.4
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 8.5e-67 259.2 590 38.3
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 5.5e-66 256.5 187 74.3
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.5e-58 231.9 413 40.4
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.2e-55 222.2 172 69.8
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 3.7e-54 217.2 432 41.4
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 8.3e-54 216.1 431 41.5
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 7.3e-42 176.4 137 69.3
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 6.8e-40 169.9 392 39.0
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.5e-39 168.7 590 31.2
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 2.3e-35 154.8 436 36.5
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 3.4e-31 141.0 340 37.9
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 7.0e-29 133.3 156 57.1
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 9.2e-29 132.9 93 72.0
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.2e-28 132.5 208 46.2
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 3.9e-27 127.5 86 80.2
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 8.9e-24 116.3 198 44.9
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.9e-21 108.6 243 35.4
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 5.4e-21 107.1 87 70.1
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.3e-19 101.7 70 81.4
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.3e-19 101.7 70 81.4
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.3e-19 101.7 70 81.4
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.5e-18 99.0 72 76.4
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.1e-17 93.2 70 80.0
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.5e-15 89.0 65 75.4
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 1.2e-12 79.3 297 31.6
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 8.7e-11 73.2 445 24.0
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.8e-08 65.5 70 55.7
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.8e-08 65.5 283 32.9
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 3.1e-08 64.7 464 25.9
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 9.9e-07 59.7 342 26.6
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 1.3e-06 59.3 337 25.8
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 2.9e-06 58.2 331 25.1
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 3.8e-06 57.8 321 26.2
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.8e-06 57.8 333 25.5
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 3.8e-06 57.8 333 25.5
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 4.9e-06 57.4 332 23.2
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.9e-06 57.4 50 68.0
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 4.9e-06 57.4 332 23.5
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 6.4e-06 57.0 330 25.8
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 6.4e-06 57.0 363 26.7
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 6.4e-06 57.0 284 26.1
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 6.4e-06 57.0 332 23.8
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 8.4e-06 56.6 339 25.1


User provided reference genes

Program Settings