Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.1e-116 423.3 217 100.0
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 5.2e-90 334.7 219 81.3
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 9.8e-89 330.5 225 76.0
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 5.0e-77 291.6 211 67.3
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.5e-76 290.0 222 64.4
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.9e-76 289.7 223 63.2
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.9e-76 289.7 222 66.2
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 3.3e-76 288.9 219 65.8
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 3.3e-76 288.9 225 64.4
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 5.6e-76 288.1 217 64.5
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 7.3e-76 287.7 219 64.4
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 9.5e-76 287.3 215 66.5
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 9.5e-76 287.3 215 64.7
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.2e-75 287.0 215 63.7
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.2e-75 287.0 215 64.7
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.6e-75 286.6 235 62.1
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.8e-75 285.8 226 62.4
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.8e-75 285.8 219 64.4
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 2.8e-75 285.8 220 66.4
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.6e-75 285.4 222 64.0
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 3.6e-75 285.4 221 65.6
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 8.1e-75 284.3 218 62.8
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 1.1e-74 283.9 217 63.6
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 1.1e-74 283.9 221 64.7
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.3e-74 282.7 225 62.7
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 3.1e-74 282.3 221 62.0
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 4.0e-74 282.0 219 63.0
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 6.8e-74 281.2 223 62.3
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 6.8e-74 281.2 217 64.5
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.2e-73 280.4 217 64.5
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.5e-73 280.0 219 62.6
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.0e-73 279.6 220 61.8
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 2.0e-73 279.6 227 62.1
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 2.6e-73 279.3 211 63.5
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 3.4e-73 278.9 214 64.0
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 3.4e-73 278.9 217 63.6
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 4.4e-73 278.5 217 60.4
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 4.4e-73 278.5 247 57.9
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 5.8e-73 278.1 221 62.9
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 9.8e-73 277.3 220 60.9
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 1.3e-72 276.9 215 64.7
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.7e-72 276.6 205 67.3
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 1.7e-72 276.6 219 61.6
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 2.9e-72 275.8 214 64.0
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 2.9e-72 275.8 217 59.9
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 3.7e-72 275.4 220 60.5
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 3.7e-72 275.4 216 63.4
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 4.9e-72 275.0 221 61.5
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 4.9e-72 275.0 219 60.7
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.9e-72 275.0 219 60.7
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 6.4e-72 274.6 219 60.7
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 6.4e-72 274.6 221 62.0
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 8.3e-72 274.2 219 60.7
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.1e-71 273.9 220 60.0
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.9e-71 273.1 216 62.5
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.9e-71 273.1 216 62.0
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.9e-71 273.1 219 62.6
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 2.4e-71 272.7 220 60.0
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 2.4e-71 272.7 220 60.0
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 2.4e-71 272.7 219 63.0
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 3.2e-71 272.3 218 60.6
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 3.2e-71 272.3 221 60.2
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 7.1e-71 271.2 225 60.4
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 7.1e-71 271.2 218 61.9
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 9.2e-71 270.8 216 60.2
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 9.2e-71 270.8 215 60.9
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.2e-70 270.4 215 60.5
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 1.6e-70 270.0 220 60.5
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.1e-70 269.6 216 62.0
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 3.5e-70 268.9 226 60.6
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 3.5e-70 268.9 218 61.5
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.5e-70 268.9 219 59.4
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 3.5e-70 268.9 221 61.1
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 3.5e-70 268.9 214 60.7
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 4.6e-70 268.5 220 58.6
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 4.6e-70 268.5 220 58.6
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 4.6e-70 268.5 215 60.5
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 6.0e-70 268.1 224 59.8
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 7.8e-70 267.7 220 57.3
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 1.0e-69 267.3 217 61.3
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.3e-69 266.9 223 59.2
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 1.7e-69 266.5 217 59.4
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 3.0e-69 265.8 232 56.9
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 3.0e-69 265.8 218 59.6
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 3.9e-69 265.4 221 57.5
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 3.9e-69 265.4 223 58.7
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 6.6e-69 264.6 219 62.1
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 8.6e-69 264.2 224 59.4
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 1.1e-68 263.8 213 62.4
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 1.5e-68 263.5 214 59.3
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.5e-68 263.5 217 60.8
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.5e-68 263.5 218 59.6
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 2.5e-68 262.7 217 58.5
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 2.5e-68 262.7 215 58.6
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.5e-68 262.7 224 58.9
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 3.3e-68 262.3 207 61.4
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 3.3e-68 262.3 243 55.6
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 5.6e-68 261.5 180 72.2
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.6e-67 258.8 228 57.9
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 8.1e-67 257.7 221 57.9
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 8.1e-67 257.7 221 57.5
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.4e-66 256.9 219 56.2
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.4e-66 256.9 216 59.7
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 2.3e-66 256.1 158 72.8
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 2.3e-66 256.1 265 51.3
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.9e-64 249.2 153 73.9
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 2.1e-62 243.0 257 52.1
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.0e-61 240.7 216 57.9
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.3e-61 240.4 203 60.1
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.7e-61 240.0 246 51.6
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 1.6e-59 233.4 207 57.5
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 2.4e-58 229.6 220 53.6
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 6.9e-58 228.0 186 61.3
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.1e-55 218.0 215 52.6
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 4.6e-54 215.3 230 50.0
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 6.0e-54 214.9 133 72.2
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 3.0e-53 212.6 190 58.9
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.6e-51 206.8 122 77.0
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 3.6e-51 205.7 218 52.3
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 4.0e-50 202.2 244 47.5
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 3.0e-45 186.0 114 72.8
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.1e-42 177.6 198 46.5
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.2e-40 169.9 222 46.4
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 5.5e-39 165.2 100 79.0
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 2.1e-38 163.3 239 38.9
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 8.7e-37 157.9 160 50.6
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 1.1e-34 151.0 253 36.4
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 3.0e-29 132.9 182 42.9
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 9.7e-20 101.3 246 30.1
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.7e-11 73.9 43 81.4
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.5e-09 67.4 43 69.8
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 2.2e-08 63.5 44 65.9
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.4e-07 60.8 37 75.7
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 6.1e-06 55.5 42 61.9


User provided reference genes

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