Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 1.1e-36 156.0 72 100.0
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.4e-36 154.8 72 98.6
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.6e-35 152.1 72 98.6
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 7.4e-33 143.3 72 95.8
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 8.1e-32 139.8 70 87.1
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 6.9e-31 136.7 72 80.6
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 9.0e-31 136.3 72 81.9
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 83.3
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 3.4e-30 134.4 72 79.2
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 4.5e-30 134.0 72 81.9
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 4.5e-30 134.0 72 81.9
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 5.8e-30 133.7 72 80.6
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 5.8e-30 133.7 72 81.9
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 5.8e-30 133.7 72 81.9
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 5.8e-30 133.7 72 81.9
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 7.6e-30 133.3 72 79.2
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 7.6e-30 133.3 72 80.6
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 1.0e-29 132.9 72 79.2
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 1.0e-29 132.9 72 80.6
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.7e-29 132.1 72 79.2
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 1.7e-29 132.1 72 79.2
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 2.2e-29 131.7 72 80.6
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 2.2e-29 131.7 72 77.8
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 2.2e-29 131.7 72 79.2
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 2.9e-29 131.3 72 79.2
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 2.9e-29 131.3 72 80.6
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 2.9e-29 131.3 72 77.8
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 2.9e-29 131.3 72 79.2
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 2.9e-29 131.3 71 77.5
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 3.8e-29 131.0 69 81.2
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 3.8e-29 131.0 72 79.2
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 3.8e-29 131.0 72 79.2
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 4.9e-29 130.6 72 77.8
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 4.9e-29 130.6 72 77.8
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 4.9e-29 130.6 72 77.8
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 6.5e-29 130.2 72 77.8
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 6.5e-29 130.2 72 79.2
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 6.5e-29 130.2 72 77.8
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 8.4e-29 129.8 72 77.8
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 8.4e-29 129.8 72 77.8
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 1.1e-28 129.4 72 77.8
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 1.4e-28 129.0 72 77.8
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.4e-28 129.0 72 76.4
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 1.9e-28 128.6 72 76.4
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 1.9e-28 128.6 72 79.2
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 2.5e-28 128.3 72 75.0
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 2.5e-28 128.3 72 76.4
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 3.2e-28 127.9 72 75.0
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 5.5e-28 127.1 72 76.4
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 7.1e-28 126.7 72 75.0
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 9.3e-28 126.3 71 77.5
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.2e-27 125.9 70 75.7
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 1.2e-27 125.9 72 73.6
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 1.2e-27 125.9 70 78.6
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 1.2e-27 125.9 72 72.2
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 1.2e-27 125.9 72 73.6
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 2.1e-27 125.2 72 72.2
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 75.7
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 2.1e-27 125.2 70 77.1
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 3.5e-27 124.4 72 75.0
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 7.9e-27 123.2 71 76.1
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 7.9e-27 123.2 70 74.3
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 1.0e-26 122.9 71 74.6
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 1.0e-26 122.9 71 74.6
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 1.0e-26 122.9 71 76.1
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 1.3e-26 122.5 71 70.4
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 2.3e-26 121.7 72 75.0
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 2.3e-26 121.7 70 74.3
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 5.1e-26 120.6 71 73.2
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 5.1e-26 120.6 71 69.0
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 5.1e-26 120.6 70 71.4
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 4.3e-25 117.5 68 72.1
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 4.3e-25 117.5 68 72.1
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.7e-25 117.1 107 54.2
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 7.4e-25 116.7 68 70.6
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 7.4e-25 116.7 107 53.3
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 1.6e-24 115.5 72 73.6
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 2.8e-24 114.8 68 72.1
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 2.4e-23 111.7 70 64.3
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 2.6e-22 108.2 61 73.8
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 3.4e-22 107.8 71 63.4
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 1.0e-21 106.3 67 70.1
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 5.0e-21 104.0 56 78.6
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 5.0e-21 104.0 56 78.6
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 8.4e-21 103.2 56 76.8
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.2e-20 101.3 63 66.7
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 4.2e-20 100.9 56 75.0
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 4.2e-20 100.9 56 75.0
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 5.5e-20 100.5 56 75.0
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 7.1e-20 100.1 57 71.9
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 9.3e-20 99.8 57 71.9
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 1.2e-19 99.4 114 43.9
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 1.2e-19 99.4 56 75.0
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.2e-19 99.4 56 76.8
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 1.6e-19 99.0 59 71.2
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.7e-19 98.2 63 66.7
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 3.5e-19 97.8 56 75.0
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 4.6e-19 97.4 68 61.8
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 7.9e-19 96.7 56 75.0
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.3e-18 95.9 56 71.4
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.3e-18 95.1 56 71.4
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 6.7e-18 93.6 56 69.6
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 8.7e-18 93.2 71 60.6
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 1.5e-17 92.4 56 66.1
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.5e-17 92.4 55 70.9
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 1.9e-17 92.0 56 66.1
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 1.9e-17 92.0 56 66.1
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 1.9e-17 92.0 56 66.1
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 3.3e-17 91.3 56 66.1
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 3.3e-17 91.3 56 67.9
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 5.7e-17 90.5 52 75.0
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 1.3e-16 89.4 72 58.3
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.3e-16 89.4 69 55.1
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 1.1e-15 86.3 52 69.2
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 1.4e-15 85.9 56 67.9
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 1.8e-15 85.5 71 54.9
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 3.1e-15 84.7 49 69.4
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 4.1e-15 84.3 56 66.1
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 7.7e-14 80.1 42 81.0
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 3.8e-13 77.8 56 66.1
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 5.0e-13 77.4 50 66.0
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 6.5e-13 77.0 44 70.5
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 2.5e-12 75.1 68 51.5
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 4.6e-11 70.9 71 47.9
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 6.1e-11 70.5 56 51.8
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 1.5e-09 65.9 65 43.1
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 1.8e-07 58.9 50 58.0
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 9.1e-07 56.6 30 80.0


User provided reference genes

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