Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 2.2e-76 288.9 146 100.0
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 4.0e-62 241.5 147 87.8
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 4.9e-52 208.0 146 78.8
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 8.5e-36 154.1 102 82.4
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 7.2e-35 151.0 138 63.8
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.0e-29 132.9 90 81.1
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 1.2e-18 97.1 121 49.6
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.0e-17 94.0 129 43.4
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 8.8e-17 90.9 121 48.8
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 8.8e-17 90.9 124 48.4
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.5e-16 90.1 126 46.0
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.5e-16 90.1 126 49.2
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 1.5e-16 90.1 120 46.7
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 2.0e-16 89.7 139 46.8
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 4.4e-16 88.6 110 49.1
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 9.7e-16 87.4 136 41.2
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 9.7e-16 87.4 115 48.7
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 9.7e-16 87.4 123 45.5
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 9.7e-16 87.4 120 45.0
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 1.7e-15 86.7 139 41.7
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.8e-15 85.9 132 43.9
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 3.7e-15 85.5 120 45.0
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.7e-15 85.5 120 45.0
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 4.8e-15 85.1 117 45.3
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 4.8e-15 85.1 112 50.9
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 6.3e-15 84.7 106 50.0
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 6.3e-15 84.7 106 50.0
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 6.3e-15 84.7 115 45.2
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 8.2e-15 84.3 115 47.8
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 1.1e-14 84.0 122 45.9
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 1.4e-14 83.6 130 42.3
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.4e-14 83.6 108 45.4
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.8e-14 83.2 106 49.1
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 1.8e-14 83.2 106 49.1
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.8e-14 83.2 106 50.0
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 2.4e-14 82.8 130 42.3
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.4e-14 82.8 123 43.9
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.4e-14 82.8 115 43.5
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.4e-14 82.8 115 43.5
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 3.1e-14 82.4 105 47.6
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 3.1e-14 82.4 105 47.6
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 3.1e-14 82.4 109 46.8
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 3.1e-14 82.4 109 46.8
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 4.1e-14 82.0 108 47.2
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 4.1e-14 82.0 105 47.6
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 5.3e-14 81.6 120 44.2
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 5.3e-14 81.6 112 51.8
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 5.3e-14 81.6 110 46.4
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 7.0e-14 81.3 108 45.4
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 7.0e-14 81.3 116 49.1
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 9.1e-14 80.9 96 50.0
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 9.1e-14 80.9 129 42.6
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 9.1e-14 80.9 120 42.5
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 9.1e-14 80.9 110 46.4
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 1.2e-13 80.5 107 47.7
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.2e-13 80.5 109 45.0
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 1.2e-13 80.5 130 44.6
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.2e-13 80.5 118 41.5
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 1.6e-13 80.1 115 46.1
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 1.6e-13 80.1 106 48.1
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 1.6e-13 80.1 128 48.4
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 2.0e-13 79.7 123 44.7
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 2.0e-13 79.7 131 42.0
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 2.0e-13 79.7 114 42.1
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.6e-13 79.3 108 47.2
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.5e-13 79.0 112 42.9
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 4.5e-13 78.6 107 47.7
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 4.5e-13 78.6 125 41.6
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.9e-13 78.2 96 49.0
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 5.9e-13 78.2 112 49.1
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 5.9e-13 78.2 115 43.5
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 1.0e-12 77.4 129 42.6
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.3e-12 77.0 129 41.9
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.3e-12 77.0 131 41.2
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.3e-12 77.0 117 47.0
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 1.7e-12 76.6 140 39.3
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 1.7e-12 76.6 115 48.7
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.7e-12 76.6 110 44.5
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.7e-12 76.6 116 43.1
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 2.2e-12 76.3 104 51.0
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 2.2e-12 76.3 108 46.3
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 3.8e-12 75.5 112 49.1
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 6.5e-12 74.7 116 47.4
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 6.5e-12 74.7 118 43.2
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 1.5e-11 73.6 128 40.6
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 1.5e-11 73.6 124 40.3
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.9e-11 73.2 100 47.0
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 4.2e-11 72.0 129 42.6
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.2e-11 72.0 91 48.4
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 4.2e-11 72.0 116 39.7
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.5e-11 71.6 83 53.0
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 5.5e-11 71.6 104 44.2
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 5.5e-11 71.6 123 39.0
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 5.5e-11 71.6 117 45.3
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 7.2e-11 71.2 118 44.1
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 9.4e-11 70.9 91 48.4
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 4.7e-10 68.6 109 41.3
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 6.1e-10 68.2 120 40.0
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 6.1e-10 68.2 116 41.4
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 6.1e-10 68.2 114 41.2
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 6.1e-10 68.2 123 37.4
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 5.2e-09 65.1 117 36.8
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.6e-08 62.8 105 43.8
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 3.3e-08 62.4 104 38.5
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 7.5e-08 61.2 131 40.5
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 6.3e-07 58.2 99 42.4
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 1.1e-06 57.4 91 41.8
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 1.8e-06 56.6 104 36.5
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 3.1e-06 55.8 56 51.8
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 4.1e-06 55.5 51 58.8
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 7.0e-06 54.7 91 41.8


User provided reference genes

Program Settings