Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb366950 Zea mays HOM05D003642 ORTHO05D004460 6.7e-229 797.0 395 100.0
Zm00001eb147290 Zea mays HOM05D003642 ORTHO05D004460 1.2e-204 716.5 395 91.1
Os01g0858900 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 3.2e-178 628.6 399 80.7
MBI17_g01557_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 1.1e-101 374.4 410 49.3
Prupe.6G127500 Prunus persica HOM05D003642 ORTHO05D004460 1.4e-101 374.0 409 50.4
FAN21G1092 Fragaria x ananassa HOM05D003642 ORTHO05D004460 4.1e-101 372.5 413 51.1
FAN25G1659 Fragaria x ananassa HOM05D003642 ORTHO05D004460 2.0e-100 370.2 412 50.5
RcHm_v2.0_Chr5g0044221 Rosa chinensis HOM05D003642 ORTHO05D004460 5.9e-100 368.6 414 50.5
MD03G1142400 Malus domestica HOM05D003642 ORTHO05D004460 1.7e-99 367.1 412 50.0
MBI01_g03598_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 2.2e-99 366.7 403 49.1
FAN16G3636 Fragaria x ananassa HOM05D003642 ORTHO05D004460 2.9e-99 366.3 413 49.9
PGR102G1012 Punica granatum HOM05D003642 ORTHO05D004460 3.2e-98 362.8 415 48.7
Hma1.2p1_0305F.1_g119710 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 7.2e-98 361.7 415 48.7
Hma1.2p1_0305F.1_g119720 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 7.2e-98 361.7 415 48.7
Hma1.2p1_0578F.1_g182375 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 7.2e-98 361.7 415 48.7
Nn2g14115 Nelumbo nucifera HOM05D003642 ORTHO05D004460 2.7e-97 359.8 402 49.3
MD11G1162900 Malus domestica HOM05D003642 ORTHO05D004460 3.6e-97 359.4 408 49.0
Medtr4g053520 Medicago truncatula HOM05D003642 ORTHO05D004460 4.7e-97 359.0 414 48.8
Psat7g189000 Pisum sativum HOM05D003642 ORTHO05D004460 2.3e-96 356.7 412 49.0
Manes.11G160800 Manihot esculenta HOM05D003642 ORTHO05D004460 3.0e-96 356.3 416 48.3
HPP92_011490 Vanilla planifolia HOM05D003642 ORTHO05D004460 3.0e-96 356.3 406 49.3
Lj3g0020685 Lotus japonicus HOM05D003642 ORTHO05D004460 5.2e-96 355.5 419 47.5
Gohir.D07G113300 Gossypium hirsutum HOM05D003642 ORTHO05D004460 6.8e-96 355.1 422 46.7
Gorai.001G121600 Gossypium raimondii HOM05D003642 ORTHO05D004460 6.8e-96 355.1 422 46.7
Actinidia07238 Actinidia chinensis HOM05D003642 ORTHO05D004460 8.8e-96 354.8 411 47.9
ATR0820G225 Amborella trichopoda HOM05D003642 ORTHO05D004460 8.8e-96 354.8 414 47.1
Thecc.09G285800 Theobroma cacao HOM05D003642 ORTHO05D004460 1.5e-95 354.0 418 47.6
Aqoxy2G01228 Aquilegia oxysepala HOM05D003642 ORTHO05D004460 5.7e-95 352.1 416 48.6
FvH4_3g24660 Fragaria vesca HOM05D003642 ORTHO05D004460 1.3e-94 350.9 393 50.4
Ca_19399_v3 Cicer arietinum L. HOM05D003642 ORTHO05D004460 1.7e-94 350.5 417 47.0
vmacro03309 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 1.7e-94 350.5 404 48.0
Phvul.011G093000 Phaseolus vulgaris HOM05D003642 ORTHO05D004460 2.2e-94 350.1 416 47.8
Rhsim13G0110400 Rhododendron simsii HOM05D003642 ORTHO05D004460 2.8e-94 349.7 407 50.1
COL.COLO4_19910 Corchorus olitorius HOM05D003642 ORTHO05D004460 3.7e-94 349.4 416 46.4
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 6.3e-94 348.6 412 47.1
VMungo1127G0822 Vigna mungo HOM05D003642 ORTHO05D004460 6.3e-94 348.6 416 47.6
TWI31G0358 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 8.3e-94 348.2 412 47.3
HPP92_025134 Vanilla planifolia HOM05D003642 ORTHO05D004460 1.1e-93 347.8 391 49.6
CDE08G0849 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 1.8e-93 347.1 369 49.3
HPP92_026090 Vanilla planifolia HOM05D003642 ORTHO05D004460 1.8e-93 347.1 385 49.6
Glyma.11G184200 Glycine max HOM05D003642 ORTHO05D004460 2.4e-93 346.7 420 46.4
Sabra04G0123900 Salix brachista HOM05D003642 ORTHO05D004460 2.4e-93 346.7 416 47.8
Eucgr.B03872 Eucalyptus grandis HOM05D003642 ORTHO05D004460 4.1e-93 345.9 433 47.8
Atru.chr3.3290 Acer truncatum HOM05D003642 ORTHO05D004460 5.4e-93 345.5 362 50.0
CsaV3_6G015050 Cucumis sativus L. HOM05D003642 ORTHO05D004460 5.4e-93 345.5 411 47.2
Duzib170G0814 Durio zibethinus HOM05D003642 ORTHO05D004460 7.0e-93 345.1 417 45.3
Glyma.12G088200 Glycine max HOM05D003642 ORTHO05D004460 7.0e-93 345.1 425 46.4
TAR369G0447 Trochodendron aralioides HOM05D003642 ORTHO05D004460 7.0e-93 345.1 406 47.5
MELO3C021417.2 Cucumis melo HOM05D003642 ORTHO05D004460 9.1e-93 344.7 411 47.7
Lalb_Chr03g0028031 Lupinus albus HOM05D003642 ORTHO05D004460 9.1e-93 344.7 415 46.7
Ciclev10028611m.g Citrus clementina HOM05D003642 ORTHO05D004460 2.7e-92 343.2 415 46.7
Manes.04G004900 Manihot esculenta HOM05D003642 ORTHO05D004460 3.5e-92 342.8 419 46.8
Peaxi162Scf00091g00013 Petunia axillaris HOM05D003642 ORTHO05D004460 3.5e-92 342.8 412 47.1
CANSAT54G0701 Cannabis sativa HOM05D003642 ORTHO05D004460 4.5e-92 342.4 411 46.7
Dinv29465 Davidia involucrata HOM05D003642 ORTHO05D004460 4.5e-92 342.4 394 48.2
TAR623G1689 Trochodendron aralioides HOM05D003642 ORTHO05D004460 4.5e-92 342.4 407 48.4
PSO384G4986 Papaver somniferum HOM05D003642 ORTHO05D004460 5.9e-92 342.0 409 46.7
HPP92_006804 Vanilla planifolia HOM05D003642 ORTHO05D004460 1.7e-91 340.5 231 66.7
Lj1A233T8 Lonicera japonica HOM05D003642 ORTHO05D004460 2.9e-91 339.7 376 48.9
Nitab4.5_0005324g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 2.9e-91 339.7 378 50.3
Potri.004G184200 Populus trichocarpa HOM05D003642 ORTHO05D004460 2.9e-91 339.7 414 47.3
Nitab4.5_0002002g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 3.8e-91 339.3 365 50.4
CAN.G919.22 Capsicum annuum HOM05D003642 ORTHO05D004460 5.0e-91 339.0 412 47.1
ClCG02G022190 Citrullus lanatus HOM05D003642 ORTHO05D004460 5.0e-91 339.0 411 47.4
Sopen06g030830 Solanum pennellii HOM05D003642 ORTHO05D004460 5.0e-91 339.0 408 46.8
Solyc06g074370.3 Solanum lycopersicum HOM05D003642 ORTHO05D004460 6.6e-91 338.6 408 47.1
Migut.D02354 Erythranthe guttata HOM05D003642 ORTHO05D004460 8.6e-91 338.2 410 46.3
Cc01_g09370 Coffea canephora HOM05D003642 ORTHO05D004460 1.1e-90 337.8 416 47.1
Gohir.A05G081500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.9e-90 337.0 413 46.7
Gohir.A07G109500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.9e-90 337.0 271 57.9
Actinidia24206 Actinidia chinensis HOM05D003642 ORTHO05D004460 2.5e-90 336.7 393 47.6
CDE06G1048 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 3.3e-90 336.3 381 47.0
AUR62039222 Chenopodium quinoa HOM05D003642 ORTHO05D004460 3.3e-90 336.3 419 45.3
Gorai.009G086400 Gossypium raimondii HOM05D003642 ORTHO05D004460 4.2e-90 335.9 411 46.5
Eucgr.B03871 Eucalyptus grandis HOM05D003642 ORTHO05D004460 7.2e-90 335.1 410 47.6
TPR.G17216 Trifolium pratense HOM05D003642 ORTHO05D004460 9.5e-90 334.7 412 44.7
Oeu002383.1 Olea europaea HOM05D003642 ORTHO05D004460 1.6e-89 334.0 409 47.9
Sed0019020 Sechium edule HOM05D003642 ORTHO05D004460 2.1e-89 333.6 426 45.1
CiPaw.13G137400 Carya illinoinensis HOM05D003642 ORTHO05D004460 2.8e-89 333.2 412 46.6
CSS0018533 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 3.6e-89 332.8 403 47.1
THA.LOC104800538 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 3.6e-89 332.8 419 45.6
Haze_23398 Corylus avellana HOM05D003642 ORTHO05D004460 6.1e-89 332.0 419 45.6
AUR62009777 Chenopodium quinoa HOM05D003642 ORTHO05D004460 1.0e-88 331.3 365 49.3
SGA_v2.0_scaffold147G36369 Striga asiatica HOM05D003642 ORTHO05D004460 1.0e-88 331.3 403 47.6
Ah.08g215830 Amaranthus hybridus HOM05D003642 ORTHO05D004460 1.8e-88 330.5 420 45.0
Sc12g0004420 Simmondsia chinensis HOM05D003642 ORTHO05D004460 1.8e-88 330.5 415 45.8
THA.LOC104826418 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 1.8e-88 330.5 415 46.5
Cfa010037 Carpinus fangiana HOM05D003642 ORTHO05D004460 5.2e-88 328.9 403 47.1
PGSC0003DMG400007143 Solanum tuberosum HOM05D003642 ORTHO05D004460 5.2e-88 328.9 408 46.6
Nn6g34944 Nelumbo nucifera HOM05D003642 ORTHO05D004460 8.9e-88 328.2 231 65.8
QL01p012516 Quercus lobata HOM05D003642 ORTHO05D004460 8.9e-88 328.2 403 47.1
Duzib150G1635 Durio zibethinus HOM05D003642 ORTHO05D004460 2.6e-87 326.6 349 48.4
Potri.009G144000 Populus trichocarpa HOM05D003642 ORTHO05D004460 3.4e-87 326.2 411 44.3
vmacro03307 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 5.7e-87 325.5 371 48.2
Glyma.12G088100 Glycine max HOM05D003642 ORTHO05D004460 7.5e-87 325.1 414 45.2
HanXRQChr01g0024131 Helianthus annuus HOM05D003642 ORTHO05D004460 7.5e-87 325.1 418 45.5
EL10Ac7g15808 Beta vulgaris HOM05D003642 ORTHO05D004460 9.8e-87 324.7 416 44.0
Sabra09G0111700 Salix brachista HOM05D003642 ORTHO05D004460 9.8e-87 324.7 359 48.2
Sabra09G0114400 Salix brachista HOM05D003642 ORTHO05D004460 9.8e-87 324.7 359 48.2
SGA_v2.0_scaffold22G09875 Striga asiatica HOM05D003642 ORTHO05D004460 9.8e-87 324.7 410 45.1
CSS0027733 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 1.3e-86 324.3 405 45.4
CSS0037628 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 1.3e-86 324.3 405 45.4
SEGI_33073 Sequoiadendron giganteum HOM05D003642 ORTHO05D004460 2.8e-86 323.2 396 46.2
Gohir.D05G084500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 3.7e-86 322.8 413 45.3
ECA233G1545 Erigeron canadensis HOM05D003642 ORTHO05D004460 4.9e-86 322.4 407 45.5
DCAR_012184 Daucus carota HOM05D003642 ORTHO05D004460 1.1e-85 321.2 395 44.3
Gorai.004G009500 Gossypium raimondii HOM05D003642 ORTHO05D004460 1.1e-85 321.2 410 43.2
HanXRQChr11g0346801 Helianthus annuus HOM05D003642 ORTHO05D004460 1.4e-85 320.9 411 44.5
MSTRG.18752 Avicennia marina HOM05D003642 ORTHO05D004460 2.4e-85 320.1 392 47.4
Lsat_1_v5_gn_1_61681 Lactuca sativa HOM05D003642 ORTHO05D004460 1.2e-84 317.8 416 45.0
Lsat_1_v5_gn_6_40461 Lactuca sativa HOM05D003642 ORTHO05D004460 1.2e-84 317.8 412 45.1
vmacro03308 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 1.2e-84 317.8 369 47.4
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 2.0e-84 317.0 362 47.2
Gohir.A08G004800 Gossypium hirsutum HOM05D003642 ORTHO05D004460 5.9e-84 315.5 408 43.6
HanXRQChr12g0364601 Helianthus annuus HOM05D003642 ORTHO05D004460 7.8e-84 315.1 401 47.1
Os04g0506800 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 7.8e-84 315.1 303 56.1
SalBow6G1534 Salvia bowleyana HOM05D003642 ORTHO05D004460 1.5e-82 310.8 248 62.1
Zm00001eb196980 Zea mays HOM05D003642 ORTHO05D004460 2.5e-82 310.1 294 55.1
Glyma.12G088000 Glycine max HOM05D003642 ORTHO05D004460 9.5e-82 308.1 415 43.4
PSO210G3660 Papaver somniferum HOM05D003642 ORTHO05D004460 1.0e-80 304.7 410 43.9
unitig_0.g1479 Utricularia gibba HOM05D003642 ORTHO05D004460 1.0e-80 304.7 409 43.5
arahy.Tifrunner.gnm1.ann1.H74NZW Arachis hypogaea HOM05D003642 ORTHO05D004460 4.0e-80 302.8 275 55.6
Zm00001eb426190 Zea mays HOM05D003642 ORTHO05D004460 8.9e-80 301.6 373 47.5
CARHR008130 Cardamine hirsuta HOM05D003642 ORTHO05D004460 3.4e-79 299.7 415 42.4
Zm00001eb077930 Zea mays HOM05D003642 ORTHO05D004460 3.4e-79 299.7 419 45.1
BcaB07g34070 Brassica carinata HOM05D003642 ORTHO05D004460 7.5e-79 298.5 364 46.4
Os12g0151500 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 1.7e-78 297.4 232 61.6
Sp1g06910 Schrenkiella parvula HOM05D003642 ORTHO05D004460 1.7e-78 297.4 416 42.8
Mapoly0005s0249 Marchantia polymorpha HOM05D003642 ORTHO05D004460 3.7e-78 296.2 236 59.3
AL1G18680 Arabidopsis lyrata HOM05D003642 ORTHO05D004460 6.4e-78 295.4 416 42.3
Rhsim13G0110200 Rhododendron simsii HOM05D003642 ORTHO05D004460 6.4e-78 295.4 372 45.2
AT1G08280 Arabidopsis thaliana HOM05D003642 ORTHO05D004460 5.4e-77 292.4 416 41.3
BraA06t23738Z Brassica rapa HOM05D003642 ORTHO05D004460 1.2e-76 291.2 420 41.9
SMO331G0026 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 1.2e-76 291.2 272 54.4
Thhalv10007826m.g Eutrema salsugineum HOM05D003642 ORTHO05D004460 2.0e-76 290.4 416 41.8
BcaB07g34071 Brassica carinata HOM05D003642 ORTHO05D004460 1.7e-75 287.3 420 41.2
A06p05300 Brassica napus HOM05D003642 ORTHO05D004460 2.3e-75 287.0 418 41.9
C05p06380 Brassica napus HOM05D003642 ORTHO05D004460 3.9e-75 286.2 420 41.0
BolC5t29393H Brassica oleracea HOM05D003642 ORTHO05D004460 3.9e-75 286.2 420 41.0
SMO145G0137 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 5.0e-75 285.8 294 48.3
Mapoly0001s0264 Marchantia polymorpha HOM05D003642 ORTHO05D004460 6.6e-75 285.4 353 43.6
arahy.Tifrunner.gnm1.ann1.U1TIAA Arachis hypogaea HOM05D003642 ORTHO05D004460 4.7e-73 279.3 201 62.7
arahy.Tifrunner.gnm1.ann1.SR1X9W Arachis hypogaea HOM05D003642 ORTHO05D004460 4.4e-71 272.7 199 61.8
Carub.0001s0763 Capsella rubella HOM05D003642 ORTHO05D004460 7.5e-71 271.9 232 54.7
TWI75G1212 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 8.3e-70 268.5 370 42.2
Zm00001eb092710 Zea mays HOM05D003642 ORTHO05D004460 6.0e-68 262.3 264 51.1
CiPaw.14G101500 Carya illinoinensis HOM05D003642 ORTHO05D004460 3.9e-67 259.6 410 39.8
AagrBONN_evm.TU.Sc2ySwM_228.2668 Anthoceros agrestis HOM05D003642 ORTHO05D004460 6.6e-67 258.8 376 40.2
FAN11G1888 Fragaria x ananassa HOM05D003642 ORTHO05D004460 1.6e-65 254.2 393 42.0
unitig_746.g26606 Utricularia gibba HOM05D003642 ORTHO05D004460 2.1e-65 253.8 252 50.4
arahy.Tifrunner.gnm1.ann1.GDD8RQ Arachis hypogaea HOM05D003642 ORTHO05D004460 2.9e-62 243.4 200 56.0
unitig_899.g15371 Utricularia gibba HOM05D003642 ORTHO05D004460 1.2e-60 238.0 259 48.3
GSVIVG01036150001 Vitis vinifera HOM05D003642 ORTHO05D004460 9.5e-58 228.4 407 36.9
Pp3c14_26500 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.2e-55 221.5 267 41.6
TAR369G0931 Trochodendron aralioides HOM05D003642 ORTHO05D004460 7.6e-55 218.8 152 67.1
Mapoly0028s0144 Marchantia polymorpha HOM05D003642 ORTHO05D004460 2.5e-50 203.8 245 44.5
Lj1A242T18 Lonicera japonica HOM05D003642 ORTHO05D004460 4.7e-49 199.5 337 38.6
Mapoly0032s0065 Marchantia polymorpha HOM05D003642 ORTHO05D004460 6.2e-49 199.1 365 34.5
Cpa.g.sc32.97 Carica papaya HOM05D003642 ORTHO05D004460 9.0e-48 195.3 414 34.5
PSO339G5820 Papaver somniferum HOM05D003642 ORTHO05D004460 4.9e-46 189.5 125 69.6
arahy.Tifrunner.gnm1.ann1.52W323 Arachis hypogaea HOM05D003642 ORTHO05D004460 9.0e-40 168.7 146 54.1
CBR_g16841 Chara braunii HOM05D003642 ORTHO05D004460 3.0e-35 153.7 224 38.8
unitig_899.g15372 Utricularia gibba HOM05D003642 ORTHO05D004460 1.1e-34 151.8 197 43.1
Gohir.D08G015066 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.9e-34 151.0 109 59.6
CDE06G0775 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 5.3e-32 142.9 93 64.5
Pp3c15_22480 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.1e-29 135.2 177 39.5
Lj2C980T3 Lonicera japonica HOM05D003642 ORTHO05D004460 4.2e-29 133.3 413 29.3
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 3.4e-23 113.6 118 49.2
CAN.G225.12 Capsicum annuum HOM05D003642 ORTHO05D004460 4.1e-16 90.1 86 52.3
Pp3c15_12330 Physcomitrium patens HOM05D003642 ORTHO05D004460 5.9e-15 86.3 118 36.4
Pp3c6_3550 Physcomitrium patens HOM05D003642 ORTHO05D004460 5.9e-15 86.3 190 28.9
Lalb_Chr19g0136571 Lupinus albus HOM05D003642 ORTHO05D004460 2.3e-11 74.3 50 62.0
CBR_g39359 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-09 67.8 239 29.3
CBR_g32150 Chara braunii HOM05D003642 ORTHO05D002554 4.1e-08 63.5 56 57.1
CBR_g4114 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-07 61.6 79 44.3
CBR_g49425 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-07 60.8 54 51.9
CBR_g46720 Chara braunii HOM05D000953 ORTHO05D000231 1.3e-06 58.5 231 26.8
PSO063G4485 Papaver somniferum HOM05D002416 ORTHO05D002554 2.2e-06 57.8 57 47.4
CANSAT80G1361 Cannabis sativa HOM05D002416 ORTHO05D002554 5.0e-06 56.6 57 47.4
CBR_g30819 Chara braunii HOM05D003642 ORTHO05D004460 5.0e-06 56.6 192 28.1


User provided reference genes

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