Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.7e-196 689.1 349 100.0
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 2.2e-151 539.3 345 77.4
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 5.2e-132 474.9 323 70.6
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.0e-131 473.0 323 71.5
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 4.4e-131 471.9 336 69.0
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 2.8e-130 469.2 339 67.3
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.8e-129 466.5 339 67.6
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 5.4e-129 464.9 320 70.0
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 5.4e-129 464.9 330 69.4
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 7.0e-129 464.5 331 68.9
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.2e-128 463.8 328 68.9
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.6e-128 463.4 323 69.3
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 1.6e-128 463.4 333 68.8
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.6e-128 463.4 336 67.3
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.6e-128 463.4 322 69.6
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 2.0e-128 463.0 323 70.3
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.7e-128 462.6 336 68.2
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 5.9e-128 461.5 335 67.8
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 5.9e-128 461.5 339 67.8
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 5.9e-128 461.5 323 69.3
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 7.7e-128 461.1 326 69.0
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 7.7e-128 461.1 339 68.1
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 1.0e-127 460.7 331 68.6
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.0e-127 460.7 323 69.0
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-127 460.3 324 69.4
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-127 460.3 333 67.9
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.3e-127 460.3 339 68.1
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.3e-127 460.3 323 70.3
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.7e-127 459.9 324 67.9
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.7e-127 459.9 337 67.4
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.7e-127 459.9 336 66.7
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 2.2e-127 459.5 347 67.1
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 2.9e-127 459.1 340 66.5
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 3.8e-127 458.8 338 68.0
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 3.8e-127 458.8 318 69.5
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 5.0e-127 458.4 334 67.1
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 5.0e-127 458.4 333 67.6
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 5.0e-127 458.4 326 68.7
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 8.5e-127 457.6 343 67.1
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.1e-126 457.2 337 67.4
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.5e-126 456.8 332 67.5
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.5e-126 456.1 332 67.2
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 3.2e-126 455.7 339 65.8
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 4.2e-126 455.3 349 65.6
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 5.5e-126 454.9 347 66.0
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 5.5e-126 454.9 339 66.4
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 9.5e-126 454.1 323 69.3
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.2e-125 453.8 334 66.5
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.2e-125 453.8 349 65.3
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 3.6e-125 452.2 335 66.9
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.6e-125 452.2 340 66.8
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 6.1e-125 451.4 323 67.8
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.2e-124 448.4 336 65.8
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 8.8e-124 447.6 375 61.6
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.8e-124 447.6 337 65.9
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.2e-123 447.2 346 64.7
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.5e-123 446.8 330 67.6
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.5e-123 446.8 346 64.7
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 1.5e-123 446.8 349 64.5
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.5e-123 446.8 327 67.0
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 2.0e-123 446.4 348 64.7
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 2.6e-123 446.0 349 64.8
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 4.4e-123 445.3 350 64.9
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 7.5e-123 444.5 327 65.4
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 9.8e-123 444.1 349 64.8
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 9.8e-123 444.1 349 64.8
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 2.8e-122 442.6 349 64.8
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 2.8e-122 442.6 333 65.5
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.3e-122 441.4 337 65.6
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 6.3e-122 441.4 330 64.8
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 1.1e-121 440.7 339 65.5
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.1e-121 440.7 343 65.0
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.4e-121 440.3 335 65.1
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.4e-121 440.3 348 63.8
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.4e-121 440.3 379 59.1
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.8e-121 439.9 334 65.6
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.8e-121 439.9 336 64.9
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.4e-121 439.5 325 66.8
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.4e-121 439.5 376 60.4
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 5.4e-121 438.3 344 64.5
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 7.0e-121 438.0 327 65.4
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.2e-120 437.2 333 64.6
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.7e-120 436.0 322 68.0
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 5.9e-120 434.9 326 66.3
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 7.8e-120 434.5 320 65.6
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 7.8e-120 434.5 326 66.3
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.0e-119 434.1 372 59.4
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 5.6e-118 428.3 401 57.1
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 7.3e-118 427.9 322 67.4
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 3.6e-117 425.6 338 64.2
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.0e-116 424.1 339 63.4
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 4.0e-116 422.2 305 67.2
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.2e-113 412.5 336 61.6
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.2e-113 412.5 339 62.2
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 4.7e-109 398.7 349 59.9
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 1.4e-108 397.1 332 61.4
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.8e-108 396.7 323 61.3
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.8e-108 396.7 330 60.3
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.9e-102 376.7 253 70.8
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 9.5e-102 374.4 253 70.8
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 2.8e-101 372.9 252 72.2
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.1e-100 370.9 253 69.2
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 3.7e-98 362.5 245 69.4
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 2.1e-96 356.7 247 68.8
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 6.6e-87 325.1 372 49.7
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 2.5e-86 323.2 325 52.9
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.3e-86 322.8 297 55.9
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 4.3e-86 322.4 318 55.0
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.6e-85 320.5 341 52.8
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 6.2e-85 318.5 201 76.1
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.3e-82 310.8 318 50.3
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 4.0e-68 262.7 235 55.7
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.5e-67 260.8 165 73.9
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 3.8e-66 256.1 324 43.2
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.2e-59 234.6 266 47.7
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 6.5e-58 228.8 370 41.4
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.1e-54 218.0 215 56.3
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.9e-54 217.2 140 73.6
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 9.7e-54 214.9 138 73.9
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 2.5e-49 200.3 131 71.0
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 5.7e-46 189.1 176 56.8
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-34 149.1 170 47.1
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 2.1e-32 144.1 80 86.2
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-28 131.3 113 59.3
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 4.1e-28 129.8 113 58.4
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 5.3e-28 129.4 109 57.8
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 7.0e-28 129.0 113 57.5
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.5e-25 121.3 102 59.8
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-25 121.3 119 53.8
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.9e-25 120.9 102 59.8
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.9e-25 120.9 102 59.8
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 2.7e-24 117.1 100 59.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.4e-20 104.0 182 39.6
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.3e-18 98.2 76 64.5
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 5.5e-17 92.8 73 58.9
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.8e-15 87.8 61 68.9
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 2.8e-13 80.5 112 47.3
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 8.3e-13 79.0 66 62.1
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 9.1e-12 75.5 66 60.6
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 5.0e-10 69.7 180 32.8
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 8.0e-08 62.4 60 53.3
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 1.0e-07 62.0 53 56.6
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 2.3e-07 60.8 167 31.7
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 6.8e-07 59.3 65 49.2
Lj2g0001379 Lotus japonicus HOM05D000874 ORTHO05D001049 5.7e-06 56.2 192 29.7
Phvul.008G031500 Phaseolus vulgaris HOM05D000874 ORTHO05D001049 7.5e-06 55.8 211 27.0
Aqoxy3G03673 Aquilegia oxysepala HOM05D000874 ORTHO05D001049 9.8e-06 55.5 186 25.8
Peaxi162Scf00991g00016 Petunia axillaris HOM05D000874 ORTHO05D001049 9.8e-06 55.5 165 26.1
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 9.8e-06 55.5 167 29.3


User provided reference genes

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