Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb364650 Zea mays HOM05D007399 ORTHO05D009341 1.8e-63 245.7 121 100.0
Os01g0918400 Oryza sativa ssp. japonica HOM05D007399 ORTHO05D009341 1.3e-26 123.2 97 69.1
Eucgr.H00781 Eucalyptus grandis HOM05D007399 ORTHO05D009341 6.4e-13 77.8 90 46.7
SalBow6G3187 Salvia bowleyana HOM05D007399 ORTHO05D009341 1.4e-12 76.6 67 49.3
SalBow6G3685 Salvia bowleyana HOM05D007399 ORTHO05D009341 1.4e-12 76.6 67 49.3
FAN15G3119 Fragaria x ananassa HOM05D007399 ORTHO05D009341 4.1e-12 75.1 81 45.7
PGR083G1511 Punica granatum HOM05D007399 ORTHO05D009341 1.2e-11 73.6 75 46.7
FvH4_2g18740 Fragaria vesca HOM05D007399 ORTHO05D009341 2.1e-11 72.8 81 44.4
FAN24G1833 Fragaria x ananassa HOM05D007399 ORTHO05D009341 2.1e-11 72.8 81 44.4
Cfa002599 Carpinus fangiana HOM05D007399 ORTHO05D009341 2.7e-11 72.4 80 45.0
Manes.13G046300 Manihot esculenta HOM05D007399 ORTHO05D009341 2.7e-11 72.4 90 45.6
Sabra02G0185900 Salix brachista HOM05D007399 ORTHO05D009341 2.7e-11 72.4 89 46.1
MD05G1173200 Malus domestica HOM05D007399 ORTHO05D009341 6.0e-11 71.2 104 38.5
Glyma.16G101000 Glycine max HOM05D007399 ORTHO05D009341 7.8e-11 70.9 94 40.4
Thecc.01G222700 Theobroma cacao HOM05D007399 ORTHO05D009341 7.8e-11 70.9 67 47.8
Haze_24850 Corylus avellana HOM05D007399 ORTHO05D009341 1.0e-10 70.5 79 44.3
Peaxi162Scf00398g00810 Petunia axillaris HOM05D007399 ORTHO05D009341 1.0e-10 70.5 64 46.9
TAR362G0473 Trochodendron aralioides HOM05D007399 ORTHO05D009341 1.3e-10 70.1 64 46.9
CSS0020487 Camellia sinensis var. sinensis HOM05D007399 ORTHO05D009341 1.7e-10 69.7 93 41.9
FAN27G2185 Fragaria x ananassa HOM05D007399 ORTHO05D009341 1.7e-10 69.7 81 43.2
Medtr8g013040 Medicago truncatula HOM05D007399 ORTHO05D009341 1.7e-10 69.7 96 38.5
Potri.002G244400 Populus trichocarpa HOM05D007399 ORTHO05D009341 1.7e-10 69.7 90 43.3
Ciclev10022115m.g Citrus clementina HOM05D007399 ORTHO05D009341 2.3e-10 69.3 65 49.2
RcHm_v2.0_Chr6g0284361 Rosa chinensis HOM05D007399 ORTHO05D009341 2.3e-10 69.3 90 41.1
GSVIVG01003279001 Vitis vinifera HOM05D007399 ORTHO05D009341 2.3e-10 69.3 83 43.4
VMungo0331G1622 Vigna mungo HOM05D007399 ORTHO05D009341 3.0e-10 68.9 64 45.3
EL10Ac7g17870 Beta vulgaris HOM05D007399 ORTHO05D009341 3.9e-10 68.6 89 39.3
Nn1g07919 Nelumbo nucifera HOM05D007399 ORTHO05D009341 3.9e-10 68.6 64 46.9
Oeu037382.1 Olea europaea HOM05D007399 ORTHO05D009341 3.9e-10 68.6 64 46.9
Prupe.8G200700 Prunus persica HOM05D007399 ORTHO05D009341 3.9e-10 68.6 79 41.8
Ah.08g214480 Amaranthus hybridus HOM05D007399 ORTHO05D009341 5.1e-10 68.2 64 43.8
Duzib133G1013 Durio zibethinus HOM05D007399 ORTHO05D009341 5.1e-10 68.2 93 40.9
HPP92_011779 Vanilla planifolia HOM05D007399 ORTHO05D009341 5.1e-10 68.2 76 48.7
Cpa.g.sc8.134 Carica papaya HOM05D007399 ORTHO05D009341 6.6e-10 67.8 64 45.3
Migut.D02494 Erythranthe guttata HOM05D007399 ORTHO05D009341 8.6e-10 67.4 74 41.9
DCAR_000523 Daucus carota HOM05D007399 ORTHO05D009341 1.1e-09 67.0 64 43.8
HanXRQChr01g0015211 Helianthus annuus HOM05D007399 ORTHO05D009341 1.1e-09 67.0 101 39.6
Oeu037384.1 Olea europaea HOM05D007399 ORTHO05D009341 1.1e-09 67.0 80 40.0
Sc24g0003500 Simmondsia chinensis HOM05D007399 ORTHO05D009341 1.1e-09 67.0 85 42.4
Aa31LG5G17710 Aethionema arabicum HOM05D007399 ORTHO05D009341 1.5e-09 66.6 79 39.2
Lj2A1128G40 Lonicera japonica HOM05D007399 ORTHO05D009341 1.5e-09 66.6 64 45.3
Psat4g199960 Pisum sativum HOM05D007399 ORTHO05D009341 1.5e-09 66.6 92 40.2
BcaC05g29751 Brassica carinata HOM05D007399 ORTHO05D009341 1.9e-09 66.2 64 45.3
COL.COLO4_15647 Corchorus olitorius HOM05D007399 ORTHO05D009341 2.5e-09 65.9 64 48.4
Dinv19187 Davidia involucrata HOM05D007399 ORTHO05D009341 2.5e-09 65.9 64 45.3
Lalb_Chr12g0209951 Lupinus albus HOM05D007399 ORTHO05D009341 2.5e-09 65.9 61 45.9
A05p41060 Brassica napus HOM05D007399 ORTHO05D009341 3.3e-09 65.5 64 45.3
BcaC05g29843 Brassica carinata HOM05D007399 ORTHO05D009341 4.3e-09 65.1 64 45.3
C05p60230 Brassica napus HOM05D007399 ORTHO05D009341 4.3e-09 65.1 64 45.3
BolC5t34673H Brassica oleracea HOM05D007399 ORTHO05D009341 4.3e-09 65.1 64 45.3
CARHR081750 Cardamine hirsuta HOM05D007399 ORTHO05D009341 4.3e-09 65.1 64 43.8
AL3G18400 Arabidopsis lyrata HOM05D007399 ORTHO05D009341 5.6e-09 64.7 64 43.8
AT3G07150 Arabidopsis thaliana HOM05D007399 ORTHO05D009341 5.6e-09 64.7 64 45.3
Actinidia09475 Actinidia chinensis HOM05D007399 ORTHO05D009341 7.3e-09 64.3 64 43.8
Carub.0003s0667 Capsella rubella HOM05D007399 ORTHO05D009341 7.3e-09 64.3 64 43.8
CiPaw.03G147600 Carya illinoinensis HOM05D007399 ORTHO05D009341 7.3e-09 64.3 77 41.6
AUR62001112 Chenopodium quinoa HOM05D007399 ORTHO05D009341 7.3e-09 64.3 64 40.6
Lsat_1_v5_gn_5_180581 Lactuca sativa HOM05D007399 ORTHO05D009341 7.3e-09 64.3 90 38.9
Lj3g0000647 Lotus japonicus HOM05D007399 ORTHO05D009341 7.3e-09 64.3 81 40.7
BraA05t22833Z Brassica rapa HOM05D007399 ORTHO05D009341 9.5e-09 63.9 64 43.8
AUR62008936 Chenopodium quinoa HOM05D007399 ORTHO05D009341 9.5e-09 63.9 64 40.6
ECA248G2789 Erigeron canadensis HOM05D007399 ORTHO05D009341 1.2e-08 63.5 68 39.7
Gohir.A11G139200 Gossypium hirsutum HOM05D007399 ORTHO05D009341 1.2e-08 63.5 54 50.0
THA.LOC104802666 Tarenaya hassleriana HOM05D007399 ORTHO05D009341 1.2e-08 63.5 91 39.6
Nitab4.5_0000345g0070 Nicotiana tabacum HOM05D007399 ORTHO05D009341 1.6e-08 63.2 81 40.7
TPR.G17137 Trifolium pratense HOM05D007399 ORTHO05D009341 1.6e-08 63.2 64 45.3
PSO170G3887 Papaver somniferum HOM05D007399 ORTHO05D009341 2.1e-08 62.8 68 42.6
Sed0009642 Sechium edule HOM05D007399 ORTHO05D009341 2.1e-08 62.8 92 43.5
Hund05568 Selenicereus undatus HOM05D007399 ORTHO05D009341 2.1e-08 62.8 64 37.5
SHI28622 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-08 62.4 95 36.8
Atru.chr6.1505 Acer truncatum HOM05D007399 ORTHO05D009341 3.6e-08 62.0 64 45.3
CAN.G3.2 Capsicum annuum HOM05D007399 ORTHO05D009341 3.6e-08 62.0 81 39.5
Thhalv10022223m.g Eutrema salsugineum HOM05D007399 ORTHO05D009341 3.6e-08 62.0 64 43.8
Rhsim01G0254900 Rhododendron simsii HOM05D007399 ORTHO05D009341 3.6e-08 62.0 80 37.5
CDE06G2632 Ceratophyllum demersum HOM05D007399 ORTHO05D009341 4.7e-08 61.6 91 39.6
Phvul.010G020400 Phaseolus vulgaris HOM05D007399 ORTHO05D009341 4.7e-08 61.6 64 40.6
Cc01_g16850 Coffea canephora HOM05D007399 ORTHO05D009341 6.2e-08 61.2 64 40.6
PSO357G0666 Papaver somniferum HOM05D007399 ORTHO05D009341 6.2e-08 61.2 68 41.2
QL09p052198 Quercus lobata HOM05D007399 ORTHO05D009341 6.2e-08 61.2 64 39.1
QL09p053062 Quercus lobata HOM05D007399 ORTHO05D009341 6.2e-08 61.2 64 39.1
Sp3g06090 Schrenkiella parvula HOM05D007399 ORTHO05D009341 6.2e-08 61.2 64 42.2
Nitab4.5_0000045g0320 Nicotiana tabacum HOM05D007399 ORTHO05D009341 8.1e-08 60.8 81 39.5
Gohir.D11G145400 Gossypium hirsutum HOM05D007399 ORTHO05D009341 1.4e-07 60.1 65 43.1
SEGI_10803 Sequoiadendron giganteum HOM05D007399 ORTHO05D009341 1.4e-07 60.1 86 32.6
ClCG09G008880 Citrullus lanatus HOM05D007399 ORTHO05D009341 2.3e-07 59.3 91 39.6
Gorai.007G155900 Gossypium raimondii HOM05D007399 ORTHO05D009341 2.3e-07 59.3 65 43.1
arahy.Tifrunner.gnm1.ann1.5JJB2W Arachis hypogaea HOM05D007399 ORTHO05D009341 3.1e-07 58.9 64 35.9
CANSAT01G2134 Cannabis sativa HOM05D007399 ORTHO05D009341 3.1e-07 58.9 65 40.0
arahy.Tifrunner.gnm1.ann1.YE6SLX Arachis hypogaea HOM05D007399 ORTHO05D009341 4.0e-07 58.5 63 38.1
CANSAT01G0413 Cannabis sativa HOM05D007399 ORTHO05D009341 5.2e-07 58.2 65 40.0
CANSAT01G1231 Cannabis sativa HOM05D007399 ORTHO05D009341 5.2e-07 58.2 65 40.0
CANSAT01G2481 Cannabis sativa HOM05D007399 ORTHO05D009341 5.2e-07 58.2 65 40.0
CsaV3_7G026010 Cucumis sativus L. HOM05D007399 ORTHO05D009341 6.8e-07 57.8 91 37.4
TWI18G0746 Tripterygium wilfordii HOM05D007399 ORTHO05D009341 8.9e-07 57.4 64 40.6
QL09p053453 Quercus lobata HOM05D007399 ORTHO05D009341 1.2e-06 57.0 64 37.5
Sopen09g023130 Solanum pennellii HOM05D007399 ORTHO05D009341 4.4e-06 55.1 73 35.6
MELO3C021053.2 Cucumis melo HOM05D007399 ORTHO05D009341 7.6e-06 54.3 91 37.4
PGSC0003DMG401023104 Solanum tuberosum HOM05D007399 ORTHO05D009341 7.6e-06 54.3 112 29.5
ATR0609G108 Amborella trichopoda HOM05D007399 ORTHO05D009341 9.9e-06 53.9 65 41.5


User provided reference genes

Program Settings