Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 7.5e-303 1043.1 547 100.0
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 4.1e-184 648.7 464 65.3
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 2.9e-182 642.5 479 64.3
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 4.2e-181 638.6 484 62.8
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 5.5e-181 638.3 467 64.0
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 4.7e-180 635.2 478 62.6
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 1.8e-179 633.3 464 64.0
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.2e-179 631.7 487 60.8
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 2.0e-178 629.8 497 61.2
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 4.4e-178 628.6 470 62.6
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.3e-177 627.1 489 60.7
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 2.2e-177 626.3 464 62.1
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.7e-177 625.5 477 61.2
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 3.7e-177 625.5 470 62.6
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 3.7e-177 625.5 470 63.6
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 4.9e-177 625.2 491 60.7
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 4.9e-177 625.2 471 63.7
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 1.1e-176 624.0 483 62.7
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.1e-176 624.0 464 61.9
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 1.4e-176 623.6 488 61.5
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.8e-176 623.2 482 61.4
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 1.8e-176 623.2 461 63.3
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 3.1e-176 622.5 491 61.5
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 3.1e-176 622.5 489 62.0
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 7.0e-176 621.3 539 56.0
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 9.2e-176 620.9 480 61.9
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 2.0e-175 619.8 481 61.7
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 2.7e-175 619.4 480 61.7
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 5.9e-175 618.2 480 61.5
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 5.9e-175 618.2 486 60.5
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 7.7e-175 617.8 461 62.7
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 1.0e-174 617.5 462 62.8
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.0e-174 617.5 463 63.1
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.3e-174 617.1 464 62.1
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.7e-174 616.7 482 61.2
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 2.3e-174 616.3 495 60.4
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 2.3e-174 616.3 491 60.7
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 2.3e-174 616.3 492 60.2
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 2.9e-174 615.9 476 62.8
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 3.8e-174 615.5 474 62.9
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 3.8e-174 615.5 463 62.0
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 5.0e-174 615.1 459 63.0
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 8.6e-174 614.4 459 62.7
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 8.6e-174 614.4 457 62.6
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 1.1e-173 614.0 464 64.4
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.1e-173 614.0 438 63.7
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 1.5e-173 613.6 470 60.4
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 2.5e-173 612.8 475 59.4
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 2.5e-173 612.8 463 62.6
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.3e-173 612.5 491 60.1
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 3.3e-173 612.5 491 59.7
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 4.3e-173 612.1 483 61.5
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 4.3e-173 612.1 475 59.4
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 7.3e-173 611.3 479 59.7
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 2.8e-172 609.4 471 62.4
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 3.6e-172 609.0 508 57.7
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 3.6e-172 609.0 447 62.9
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 3.0e-171 605.9 452 63.7
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 5.2e-171 605.1 494 57.7
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 4.4e-170 602.1 462 60.8
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 4.4e-170 602.1 457 60.8
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 5.7e-170 601.7 451 61.0
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 1.7e-169 600.1 466 61.2
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 4.9e-169 598.6 454 61.5
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 8.3e-169 597.8 470 58.7
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 5.4e-168 595.1 458 59.2
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 5.9e-167 591.7 477 58.9
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 3.0e-166 589.3 443 61.6
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 6.6e-166 588.2 454 59.3
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 1.5e-165 587.0 483 58.6
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 8.9e-163 577.8 491 56.4
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 1.2e-162 577.4 463 60.5
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 2.6e-162 576.2 486 58.0
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.1e-160 570.9 469 58.6
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 1.2e-159 567.4 463 59.0
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.2e-159 567.4 452 60.8
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 3.9e-158 562.4 412 64.6
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 8.6e-158 561.2 474 58.4
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.1e-157 560.8 497 56.5
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.2e-156 557.4 448 59.2
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 1.4e-155 553.9 411 62.8
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 1.4e-155 553.9 308 86.7
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.0e-155 552.4 506 54.3
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 8.9e-155 551.2 414 61.6
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 5.8e-154 548.5 462 56.3
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 1.9e-152 543.5 461 56.2
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 1.2e-151 540.8 466 54.1
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 9.5e-149 531.2 463 56.2
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.7e-143 513.1 483 53.0
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 1.2e-138 497.7 447 52.1
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.7e-134 483.8 486 51.2
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 3.0e-126 456.4 338 63.0
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 1.7e-121 440.7 320 64.7
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 9.3e-120 434.9 313 62.9
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 3.5e-119 433.0 453 50.1
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.4e-115 421.0 370 55.9
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 3.4e-114 416.4 420 48.8
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.2e-112 409.8 397 51.4
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 3.0e-110 403.3 339 58.7
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 2.4e-107 393.7 380 50.3
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 2.9e-97 360.1 263 64.6
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 4.8e-84 316.2 300 55.0
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.9e-81 307.0 386 43.8
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 4.8e-76 289.7 221 60.2
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 3.8e-73 280.0 251 55.4
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 3.6e-71 273.5 226 58.8
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 5.2e-70 269.6 262 52.3
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.1e-67 261.9 527 32.1
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 2.8e-60 237.3 216 53.2
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 2.7e-42 177.6 120 65.8
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 1.2e-31 142.1 431 27.1
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.4e-27 128.6 112 58.9
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 8.6e-25 119.4 86 65.1
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 6.2e-23 113.2 379 25.3
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 4.0e-22 110.5 366 27.3
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 3.8e-20 104.0 73 64.4
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 4.2e-19 100.5 171 32.2
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 2.1e-18 98.2 91 53.8
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.6e-15 88.6 88 52.3
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.9e-12 77.0 64 51.6
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 8.7e-09 66.2 78 46.2
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 1.9e-08 65.1 75 48.0
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 2.4e-06 58.2 41 53.7
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.4e-06 58.2 88 37.5
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 3.1e-06 57.8 102 37.3


User provided reference genes

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