Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb364250 Zea mays HOM05D002007 ORTHO05D000355 2.5e-165 585.5 320 100.0
Zm00001eb077140 Zea mays HOM05D002007 ORTHO05D000355 3.3e-69 266.2 143 91.6
Os04g0520900 Oryza sativa ssp. japonica HOM05D002007 ORTHO05D000355 1.5e-48 197.6 158 61.4
HPP92_014382 Vanilla planifolia HOM05D002007 ORTHO05D000355 1.5e-32 144.4 138 48.6
Zm00001eb418820 Zea mays HOM05D002007 ORTHO05D000355 6.2e-31 139.0 75 88.0
Zm00001eb171420 Zea mays HOM05D002007 ORTHO05D000355 1.6e-26 124.4 66 92.4
Prupe.3G160100 Prunus persica HOM05D002007 ORTHO05D000355 2.5e-24 117.1 137 43.1
FAN10G3398 Fragaria x ananassa HOM05D002007 ORTHO05D000355 1.6e-23 114.4 137 43.8
FAN10G4320 Fragaria x ananassa HOM05D002007 ORTHO05D000355 1.6e-23 114.4 137 43.8
Dinv19018 Davidia involucrata HOM05D002007 ORTHO05D000355 8.1e-23 112.1 137 40.9
MD17G1257200 Malus domestica HOM05D002007 ORTHO05D000355 8.1e-23 112.1 137 40.9
Psat5g122600 Pisum sativum HOM05D002007 ORTHO05D000355 2.4e-22 110.5 137 40.1
FAN03G1132 Fragaria x ananassa HOM05D002007 ORTHO05D000355 4.0e-22 109.8 137 42.3
TPR.G32438 Trifolium pratense HOM05D002007 ORTHO05D000355 5.2e-22 109.4 143 36.4
FvH4_7g03480 Fragaria vesca HOM05D002007 ORTHO05D000355 1.5e-21 107.8 137 41.6
TPR.G2559 Trifolium pratense HOM05D002007 ORTHO05D000355 1.5e-21 107.8 137 39.4
Ca_08161_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 2.6e-21 107.1 137 39.4
Ca_17107_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 2.6e-21 107.1 137 39.4
SGA_v2.0_scaffold149G36498 Striga asiatica HOM05D002007 ORTHO05D000355 5.8e-21 105.9 142 38.7
EL10Ac2g04472 Beta vulgaris HOM05D002007 ORTHO05D000355 9.9e-21 105.1 137 38.7
Sed0014203 Sechium edule HOM05D002007 ORTHO05D000355 9.9e-21 105.1 134 37.3
Atru.chr1.1841 Acer truncatum HOM05D002007 ORTHO05D000355 2.2e-20 104.0 137 37.2
DCAR_010740 Daucus carota HOM05D002007 ORTHO05D000355 2.2e-20 104.0 142 37.3
Medtr3g067670 Medicago truncatula HOM05D002007 ORTHO05D000355 2.2e-20 104.0 137 38.0
CSS0003415 Camellia sinensis var. sinensis HOM05D002007 ORTHO05D000355 3.8e-20 103.2 140 37.1
CsaV3_5G024040 Cucumis sativus L. HOM05D002007 ORTHO05D000355 3.8e-20 103.2 134 35.1
SalBow3G3257 Salvia bowleyana HOM05D002007 ORTHO05D000355 3.8e-20 103.2 144 37.5
AUR62023230 Chenopodium quinoa HOM05D002007 ORTHO05D000355 4.9e-20 102.8 132 40.2
Eucgr.J01548 Eucalyptus grandis HOM05D002007 ORTHO05D000355 4.9e-20 102.8 136 39.7
AUR62023183 Chenopodium quinoa HOM05D002007 ORTHO05D000355 6.4e-20 102.4 137 38.7
ClCG03G008670 Citrullus lanatus HOM05D002007 ORTHO05D000355 6.4e-20 102.4 134 35.8
Aqoxy3G00112 Aquilegia oxysepala HOM05D002007 ORTHO05D000355 1.4e-19 101.3 140 37.9
Lalb_Chr15g0084821 Lupinus albus HOM05D002007 ORTHO05D000355 2.4e-19 100.5 137 36.5
VMungo1383G1228 Vigna mungo HOM05D002007 ORTHO05D000355 2.4e-19 100.5 139 38.8
COL.COLO4_15732 Corchorus olitorius HOM05D002007 ORTHO05D000355 3.2e-19 100.1 137 38.0
VMungo0251G3121 Vigna mungo HOM05D002007 ORTHO05D000355 4.1e-19 99.8 146 37.0
Ah.10g038020 Amaranthus hybridus HOM05D002007 ORTHO05D000355 5.4e-19 99.4 137 38.0
Sc11g0008660 Simmondsia chinensis HOM05D002007 ORTHO05D000355 9.2e-19 98.6 143 35.7
QL11p003913 Quercus lobata HOM05D002007 ORTHO05D000355 1.2e-18 98.2 149 34.9
Phvul.001G231300 Phaseolus vulgaris HOM05D002007 ORTHO05D000355 2.1e-18 97.4 139 38.1
Migut.H00273 Erythranthe guttata HOM05D002007 ORTHO05D000355 2.7e-18 97.1 143 37.8
Cpa.g.sc116.29 Carica papaya HOM05D002007 ORTHO05D000355 3.5e-18 96.7 145 35.2
Duzib133G0117 Durio zibethinus HOM05D002007 ORTHO05D000355 6.0e-18 95.9 143 35.0
Ciclev10011615m.g Citrus clementina HOM05D002007 ORTHO05D000355 1.0e-17 95.1 145 34.5
PGR042G0958 Punica granatum HOM05D002007 ORTHO05D000355 1.3e-17 94.7 135 37.0
Lsat_1_v5_gn_2_79961 Lactuca sativa HOM05D002007 ORTHO05D000355 1.7e-17 94.4 151 34.4
Rhsim08G0086500 Rhododendron simsii HOM05D002007 ORTHO05D000355 1.7e-17 94.4 143 35.0
Actinidia22791 Actinidia chinensis HOM05D002007 ORTHO05D000355 3.0e-17 93.6 144 36.1
MSTRG.2783 Avicennia marina HOM05D002007 ORTHO05D000355 3.0e-17 93.6 143 33.6
Glyma.18G039300 Glycine max HOM05D002007 ORTHO05D000355 3.0e-17 93.6 137 37.2
Os02g0711100 Oryza sativa ssp. japonica HOM05D002007 ORTHO05D000355 5.1e-17 92.8 137 32.8
Nn4g24181 Nelumbo nucifera HOM05D002007 ORTHO05D000355 1.1e-16 91.7 137 35.8
Gohir.A05G212100 Gossypium hirsutum HOM05D002007 ORTHO05D000355 1.5e-16 91.3 137 33.6
Lj6g0020415 Lotus japonicus HOM05D002007 ORTHO05D000355 4.3e-16 89.7 138 33.3
ECA238G3809 Erigeron canadensis HOM05D002007 ORTHO05D000355 7.3e-16 89.0 145 32.4
Lj4g0014196 Lotus japonicus HOM05D002007 ORTHO05D000355 7.3e-16 89.0 152 32.9
TPR.G32446 Trifolium pratense HOM05D002007 ORTHO05D000355 1.6e-15 87.8 129 33.3
Phvul.003G278000 Phaseolus vulgaris HOM05D002007 ORTHO05D000355 2.1e-15 87.4 140 35.7
MELO3C022847.2 Cucumis melo HOM05D002007 ORTHO05D000355 3.6e-15 86.7 134 32.8
Haze_10416 Corylus avellana HOM05D002007 ORTHO05D000355 4.7e-15 86.3 136 35.3
CDE03G0080 Ceratophyllum demersum HOM05D002007 ORTHO05D000355 1.1e-14 85.1 132 32.6
HanXRQChr14g0440351 Helianthus annuus HOM05D002007 ORTHO05D000355 1.4e-14 84.7 137 32.8
CDE04G2530 Ceratophyllum demersum HOM05D002007 ORTHO05D000355 1.5e-13 81.3 114 35.1
RcHm_v2.0_Chr3g0493421 Rosa chinensis HOM05D002007 ORTHO05D000355 2.0e-13 80.9 98 41.8
arahy.Tifrunner.gnm1.ann1.D5KL38 Arachis hypogaea HOM05D002007 ORTHO05D000355 2.6e-13 80.5 140 30.7
arahy.Tifrunner.gnm1.ann1.WWV1B2 Arachis hypogaea HOM05D002007 ORTHO05D005759 2.6e-13 80.5 140 30.7
Ciclev10000932m.g Citrus clementina HOM05D002007 ORTHO05D000355 3.4e-13 80.1 136 31.6
FAN06G1835 Fragaria x ananassa HOM05D002007 ORTHO05D000355 4.4e-13 79.7 137 35.0
MD09G1262300 Malus domestica HOM05D002007 ORTHO05D000355 4.4e-13 79.7 137 32.1
Sed0011706 Sechium edule HOM05D002007 ORTHO05D000355 4.4e-13 79.7 133 33.8
Dinv36804 Davidia involucrata HOM05D002007 ORTHO05D000355 7.6e-13 79.0 106 41.5
Dinv14885 Davidia involucrata HOM05D002007 ORTHO05D000355 1.7e-12 77.8 94 41.5
MELO3C010533.2 Cucumis melo HOM05D002007 ORTHO05D000355 2.2e-12 77.4 140 30.7
CsaV3_4G014820 Cucumis sativus L. HOM05D002007 ORTHO05D000355 4.9e-12 76.3 140 30.0
FAN08G2967 Fragaria x ananassa HOM05D002007 ORTHO05D000355 1.2e-10 71.6 144 30.6
Haze_10410 Corylus avellana HOM05D002007 ORTHO05D000355 2.7e-10 70.5 184 31.0
Actinidia14730 Actinidia chinensis HOM05D002007 ORTHO05D000355 1.5e-08 64.7 131 29.0
Lj2P434T45 Lonicera japonica HOM05D002007 ORTHO05D000355 2.5e-08 63.9 137 27.7
Ca_22460_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 5.6e-08 62.8 138 27.5
Actinidia26787 Actinidia chinensis HOM05D002007 ORTHO05D000355 2.1e-07 60.8 133 30.1
QL12p003380 Quercus lobata HOM05D002007 ORTHO05D000355 2.8e-07 60.5 60 45.0
TAR371G1089 Trochodendron aralioides HOM05D002007 ORTHO05D000355 4.8e-07 59.7 132 26.5
Haze_10415 Corylus avellana HOM05D002007 ORTHO05D000355 6.2e-07 59.3 127 30.7
arahy.Tifrunner.gnm1.ann1.Z51W7G Arachis hypogaea HOM05D002986 ORTHO05D013699 2.4e-06 57.4 175 21.1
Sc01g0005900 Simmondsia chinensis HOM05D002007 ORTHO05D000355 9.0e-06 55.5 147 27.2


User provided reference genes

Program Settings