Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 3.6e-118 428.3 224 100.0
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 2.1e-62 243.0 141 85.8
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 4.2e-18 95.9 134 45.5
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 1.0e-16 91.3 130 46.2
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 1.8e-16 90.5 135 46.7
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 2.3e-16 90.1 137 45.3
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 8.7e-16 88.2 133 45.9
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 1.5e-15 87.4 145 41.4
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 2.5e-15 86.7 133 44.4
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.5e-15 86.7 133 44.4
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.5e-15 86.7 133 44.4
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 2.5e-15 86.7 128 42.2
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 3.3e-15 86.3 143 42.7
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.4e-15 85.1 133 43.6
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.4e-15 85.1 133 43.6
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.4e-15 85.1 133 43.6
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 9.7e-15 84.7 151 41.1
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 9.7e-15 84.7 126 42.1
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 1.6e-14 84.0 138 44.9
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 1.6e-14 84.0 136 42.6
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 2.2e-14 83.6 149 41.6
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 4.8e-14 82.4 147 42.9
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 4.8e-14 82.4 135 43.7
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 4.8e-14 82.4 145 40.0
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 4.8e-14 82.4 126 44.4
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 6.3e-14 82.0 145 42.8
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 6.3e-14 82.0 140 43.6
COL.COLO4_14948 Corchorus olitorius HOM05D008199 ORTHO05D010334 1.1e-13 81.3 57 61.4
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.1e-13 81.3 145 42.1
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 1.4e-13 80.9 147 45.6
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.4e-13 80.9 150 42.0
BcaC02g12078 Brassica carinata HOM05D008199 ORTHO05D010334 1.8e-13 80.5 52 69.2
A05p06880 Brassica napus HOM05D008199 ORTHO05D010334 1.8e-13 80.5 52 69.2
BraA05t19653Z Brassica rapa HOM05D008199 ORTHO05D010334 1.8e-13 80.5 52 69.2
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.8e-13 80.5 139 41.7
Gorai.012G069200 Gossypium raimondii HOM05D008199 ORTHO05D010334 2.4e-13 80.1 54 64.8
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 3.1e-13 79.7 151 40.4
Gohir.A05G350700 Gossypium hirsutum HOM05D008199 ORTHO05D010334 3.1e-13 79.7 46 73.9
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 3.1e-13 79.7 133 44.4
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 4.1e-13 79.3 134 40.3
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 4.1e-13 79.3 137 40.9
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 4.1e-13 79.3 150 41.3
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 5.3e-13 79.0 144 43.1
C04p08150 Brassica napus HOM05D008199 ORTHO05D010334 5.3e-13 79.0 46 71.7
BolC4t22425H Brassica oleracea HOM05D008199 ORTHO05D010334 5.3e-13 79.0 46 71.7
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 6.9e-13 78.6 132 43.9
Lalb_Chr02g0144051 Lupinus albus HOM05D008199 ORTHO05D010334 6.9e-13 78.6 41 78.0
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 6.9e-13 78.6 149 40.9
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 9.0e-13 78.2 136 41.2
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 9.0e-13 78.2 136 40.4
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 9.0e-13 78.2 136 40.4
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 9.0e-13 78.2 136 41.9
ECA238G2613 Erigeron canadensis HOM05D008199 ORTHO05D010334 9.0e-13 78.2 42 78.6
CARHR134390 Cardamine hirsuta HOM05D008199 ORTHO05D010334 1.2e-12 77.8 52 67.3
Glyma.20G099000 Glycine max HOM05D008199 ORTHO05D010334 1.2e-12 77.8 43 72.1
Gohir.D04G061900 Gossypium hirsutum HOM05D008199 ORTHO05D010334 1.2e-12 77.8 54 63.0
Lj5g0016979 Lotus japonicus HOM05D008199 ORTHO05D010334 1.2e-12 77.8 52 65.4
Aa31LG5G20100 Aethionema arabicum HOM05D008199 ORTHO05D010334 1.5e-12 77.4 46 67.4
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 1.5e-12 77.4 136 41.2
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.5e-12 77.4 148 39.2
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 2.0e-12 77.0 136 40.4
GSVIVG01016602001 Vitis vinifera HOM05D000953 ORTHO05D000231 2.0e-12 77.0 43 72.1
AL4G36900 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 2.6e-12 76.6 48 68.8
AL4G36920 Arabidopsis lyrata HOM05D008199 ORTHO05D010334 2.6e-12 76.6 48 68.8
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 2.6e-12 76.6 126 41.3
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 2.6e-12 76.6 132 39.4
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 2.6e-12 76.6 139 41.0
Sp4g21800 Schrenkiella parvula HOM05D008199 ORTHO05D010334 2.6e-12 76.6 52 63.5
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 3.4e-12 76.3 138 39.9
CiPaw.01G282700 Carya illinoinensis HOM05D008199 ORTHO05D010334 3.4e-12 76.3 51 60.8
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 4.5e-12 75.9 136 41.2
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 4.5e-12 75.9 140 40.0
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 4.5e-12 75.9 136 39.0
AT2G39500 Arabidopsis thaliana HOM05D008199 ORTHO05D010334 5.9e-12 75.5 48 64.6
Lsat_1_v5_gn_2_117560 Lactuca sativa HOM05D008199 ORTHO05D010334 5.9e-12 75.5 54 63.0
Sc20g0002530 Simmondsia chinensis HOM05D008199 ORTHO05D010334 5.9e-12 75.5 43 69.8
CSS0014372 Camellia sinensis var. sinensis HOM05D008199 ORTHO05D010334 7.7e-12 75.1 42 73.8
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 7.7e-12 75.1 135 40.0
RcHm_v2.0_Chr1g0366131 Rosa chinensis HOM05D008199 ORTHO05D010334 7.7e-12 75.1 55 60.0
CANSAT11G0099 Cannabis sativa HOM05D008199 ORTHO05D010334 1.0e-11 74.7 52 59.6
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 1.0e-11 74.7 146 40.4
PGR142G1326 Punica granatum HOM05D008199 ORTHO05D010334 1.0e-11 74.7 52 61.5
Actinidia02971 Actinidia chinensis HOM05D008199 ORTHO05D010334 1.3e-11 74.3 42 73.8
Carub.0004s2158 Capsella rubella HOM05D008199 ORTHO05D010334 1.3e-11 74.3 51 62.7
Cpa.g.sc1.358 Carica papaya HOM05D008199 ORTHO05D010334 1.3e-11 74.3 55 58.2
Dinv31422 Davidia involucrata HOM05D000953 ORTHO05D000231 1.3e-11 74.3 46 69.6
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-11 74.3 135 40.7
PGSC0003DMG400029465 Solanum tuberosum HOM05D008199 ORTHO05D010334 1.3e-11 74.3 52 61.5
TWI38G1458 Tripterygium wilfordii HOM05D008199 ORTHO05D010334 1.3e-11 74.3 53 60.4
Actinidia07733 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.2e-11 73.6 42 73.8
Actinidia34336 Actinidia chinensis HOM05D008199 ORTHO05D010334 2.2e-11 73.6 42 73.8
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 2.2e-11 73.6 136 41.2
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 2.2e-11 73.6 136 41.2
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 2.2e-11 73.6 135 40.0
Thecc.10G048500 Theobroma cacao HOM05D008199 ORTHO05D010334 2.2e-11 73.6 45 68.9
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 2.9e-11 73.2 133 39.8
MD01G1123400 Malus domestica HOM05D008199 ORTHO05D010334 2.9e-11 73.2 55 56.4
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 3.8e-11 72.8 132 40.2
Medtr1g115355 Medicago truncatula HOM05D008199 ORTHO05D010334 3.8e-11 72.8 42 69.0
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.8e-11 72.8 134 39.6
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 3.8e-11 72.8 138 39.1
THA.LOC104824262 Tarenaya hassleriana HOM05D008199 ORTHO05D010334 3.8e-11 72.8 51 62.7
Cfa001517 Carpinus fangiana HOM05D008199 ORTHO05D010334 5.0e-11 72.4 51 56.9
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 5.0e-11 72.4 128 38.3
Atru.chr12.520 Acer truncatum HOM05D008199 ORTHO05D010334 6.5e-11 72.0 56 58.9
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 6.5e-11 72.0 136 39.0
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 6.5e-11 72.0 136 39.0
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 6.5e-11 72.0 136 39.0
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 6.5e-11 72.0 146 39.7
Nn2g10469 Nelumbo nucifera HOM05D008199 ORTHO05D010334 6.5e-11 72.0 53 56.6
Potri.008G051100 Populus trichocarpa HOM05D008199 ORTHO05D010334 6.5e-11 72.0 51 58.8
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 8.5e-11 71.6 136 39.0
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 8.5e-11 71.6 136 39.0
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 8.5e-11 71.6 136 39.0
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 1.1e-10 71.2 136 38.2
Psat6g236360 Pisum sativum HOM05D008199 ORTHO05D010334 1.1e-10 71.2 42 66.7
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 1.1e-10 71.2 128 42.2
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 1.4e-10 70.9 150 35.3
Manes.07G111800 Manihot esculenta HOM05D008199 ORTHO05D010334 1.4e-10 70.9 51 56.9
TAR633G0052 Trochodendron aralioides HOM05D008199 ORTHO05D010334 1.4e-10 70.9 53 60.4
Aqoxy5G00469 Aquilegia oxysepala HOM05D008199 ORTHO05D010334 1.9e-10 70.5 47 63.8
CAN.G74.25 Capsicum annuum HOM05D008199 ORTHO05D010334 1.9e-10 70.5 51 58.8
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 1.9e-10 70.5 69 58.0
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 1.9e-10 70.5 139 37.4
Phvul.007G011200 Phaseolus vulgaris HOM05D008199 ORTHO05D010334 1.9e-10 70.5 46 60.9
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 1.9e-10 70.5 63 58.7
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 1.9e-10 70.5 127 39.4
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.9e-10 70.5 134 38.1
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 2.5e-10 70.1 156 35.9
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 2.5e-10 70.1 138 39.1
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 3.2e-10 69.7 131 41.2
DCAR_027672 Daucus carota HOM05D008199 ORTHO05D010334 3.2e-10 69.7 47 61.7
Hma1.2p1_0727F.1_g209100 Hydrangea macrophylla HOM05D008199 ORTHO05D010334 3.2e-10 69.7 42 64.3
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 3.2e-10 69.7 158 37.3
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 3.2e-10 69.7 68 57.4
Sed0003138 Sechium edule HOM05D008199 ORTHO05D010334 3.2e-10 69.7 43 60.5
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 3.2e-10 69.7 134 38.1
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 3.2e-10 69.7 133 36.8
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 4.2e-10 69.3 52 65.4
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 4.2e-10 69.3 151 37.7
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 4.2e-10 69.3 139 37.4
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.2e-10 69.3 134 38.1
Oeu021440.1 Olea europaea HOM05D008199 ORTHO05D010334 5.5e-10 68.9 47 57.4
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 7.2e-10 68.6 52 65.4
Migut.F01496 Erythranthe guttata HOM05D008199 ORTHO05D010334 7.2e-10 68.6 46 65.2
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 7.2e-10 68.6 154 37.0
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 7.2e-10 68.6 157 36.9
Prupe.2G230900 Prunus persica HOM05D008199 ORTHO05D010334 7.2e-10 68.6 53 56.6
PSO339G4122 Papaver somniferum HOM05D008199 ORTHO05D010334 9.4e-10 68.2 43 65.1
MBI05_g35603_MAGBIO Magnolia biondii HOM05D008199 ORTHO05D010334 1.2e-09 67.8 40 70.0
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 1.6e-09 67.4 60 60.0
ClCG09G020150 Citrullus lanatus HOM05D008199 ORTHO05D010334 2.1e-09 67.0 43 60.5
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 2.7e-09 66.6 140 37.1
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.6e-09 66.2 45 71.1
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 4.6e-09 65.9 58 56.9
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 6.1e-09 65.5 48 70.8
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 6.1e-09 65.5 131 38.2
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 7.9e-09 65.1 136 33.1
Ciclev10033682m.g Citrus clementina HOM05D008199 ORTHO05D010334 7.9e-09 65.1 42 61.9
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 7.9e-09 65.1 156 34.6
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 1.0e-08 64.7 64 51.6
SEGI_29944 Sequoiadendron giganteum HOM05D008199 ORTHO05D010334 1.4e-08 64.3 40 60.0
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.4e-08 64.3 136 39.7
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 1.8e-08 63.9 127 41.7
Manes.10G036000 Manihot esculenta HOM05D008199 ORTHO05D010334 1.8e-08 63.9 39 64.1
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 3.9e-08 62.8 156 34.0
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.9e-08 62.8 56 60.7
SHI12594 Sapria himalayana HOM05D008199 ORTHO05D010334 8.8e-08 61.6 74 41.9
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 1.5e-07 60.8 53 54.7
Duzib128G0439 Durio zibethinus HOM05D008199 ORTHO05D010334 1.5e-07 60.8 39 64.1
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 2.0e-07 60.5 50 60.0
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 2.6e-07 60.1 132 33.3
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.4e-07 59.3 40 70.0
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 1.3e-06 57.8 146 32.9
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 1.3e-06 57.8 146 34.2
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 3.7e-06 56.2 174 32.2
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 6.3e-06 55.5 121 29.8


User provided reference genes

Program Settings