Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb361440 Zea mays HOM05D001055 ORTHO05D000867 4.9e-109 397.9 214 100.0
Zm00001eb140750 Zea mays HOM05D001055 ORTHO05D000867 1.0e-98 363.6 214 93.5
Zm00001eb032330 Zea mays HOM05D001055 ORTHO05D000867 3.0e-74 282.3 168 90.5
Zm00001eb349340 Zea mays HOM05D001055 ORTHO05D000867 5.2e-58 228.4 132 91.7
Os12g0624200 Oryza sativa ssp. japonica HOM05D001055 ORTHO05D000867 1.3e-32 144.1 167 58.7
Zm00001eb052700 Zea mays HOM05D001055 ORTHO05D000867 8.3e-32 141.4 216 51.4
Os03g0656500 Oryza sativa ssp. japonica HOM05D001055 ORTHO05D000867 2.7e-30 136.3 210 49.0
Zm00001eb218250 Zea mays HOM05D001055 ORTHO05D000867 4.6e-30 135.6 168 54.2
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 3.6e-19 99.4 59 96.6
MBI11_g44569_MAGBIO Magnolia biondii HOM05D001055 ORTHO05D000867 8.4e-16 88.2 179 31.3
QL07p017443 Quercus lobata HOM05D001055 ORTHO05D000867 2.3e-13 80.1 177 33.9
ATR0697G149 Amborella trichopoda HOM05D001055 ORTHO05D000867 1.5e-12 77.4 213 33.8
Haze_20404 Corylus avellana HOM05D001055 ORTHO05D000867 1.9e-12 77.0 189 33.3
Prupe.7G015000 Prunus persica HOM05D001055 ORTHO05D000867 1.9e-12 77.0 167 34.1
Lalb_Chr22g0358641 Lupinus albus HOM05D001055 ORTHO05D000867 3.3e-12 76.3 170 34.1
FAN15G2486 Fragaria x ananassa HOM05D001055 ORTHO05D000867 4.3e-12 75.9 177 32.8
Oeu052785.1 Olea europaea HOM05D001055 ORTHO05D000867 5.6e-12 75.5 201 30.3
FAN20G1937 Fragaria x ananassa HOM05D001055 ORTHO05D000867 1.2e-11 74.3 177 32.2
AL6G28960 Arabidopsis lyrata HOM05D001055 ORTHO05D000867 1.6e-11 73.9 166 36.1
PGR042G3887 Punica granatum HOM05D001055 ORTHO05D000867 1.6e-11 73.9 174 33.3
Eucgr.A02142 Eucalyptus grandis HOM05D001055 ORTHO05D000867 2.1e-11 73.6 178 33.7
HPP92_006130 Vanilla planifolia HOM05D001055 ORTHO05D000867 3.6e-11 72.8 167 36.5
Carub.0006s1609 Capsella rubella HOM05D001055 ORTHO05D000867 4.7e-11 72.4 167 37.1
Cpa.g.sc161.37 Carica papaya HOM05D001055 ORTHO05D000867 6.2e-11 72.0 177 35.0
CiPaw.09G166500 Carya illinoinensis HOM05D001055 ORTHO05D000867 6.2e-11 72.0 168 34.5
THA.LOC104820793 Tarenaya hassleriana HOM05D001055 ORTHO05D000867 6.2e-11 72.0 175 34.3
Lj2g0011028 Lotus japonicus HOM05D001055 ORTHO05D000867 1.4e-10 70.9 168 34.5
Peaxi162Scf00457g00051 Petunia axillaris HOM05D001055 ORTHO05D000867 1.8e-10 70.5 189 30.2
FAN24G2427 Fragaria x ananassa HOM05D001055 ORTHO05D000867 2.4e-10 70.1 177 31.6
Lalb_Chr14g0364841 Lupinus albus HOM05D001055 ORTHO05D000867 2.4e-10 70.1 163 35.0
MBI11_g45713_MAGBIO Magnolia biondii HOM05D001055 ORTHO05D000867 2.4e-10 70.1 192 34.9
TAR623G0573 Trochodendron aralioides HOM05D001055 ORTHO05D000867 2.4e-10 70.1 163 35.0
MBI11_g44568_MAGBIO Magnolia biondii HOM05D001055 ORTHO05D000867 3.1e-10 69.7 192 34.9
Manes.08G153000 Manihot esculenta HOM05D001055 ORTHO05D000867 3.1e-10 69.7 168 32.7
Sabra13G0057500 Salix brachista HOM05D001055 ORTHO05D000867 3.1e-10 69.7 173 31.2
Solyc09g072690.1 Solanum lycopersicum HOM05D001055 ORTHO05D000867 3.1e-10 69.7 166 34.3
AT5G17860 Arabidopsis thaliana HOM05D001055 ORTHO05D000867 4.0e-10 69.3 164 35.4
CiPaw.09G166600 Carya illinoinensis HOM05D001055 ORTHO05D000867 5.2e-10 68.9 168 33.3
MD12G1011500 Malus domestica HOM05D001055 ORTHO05D000867 5.2e-10 68.9 168 35.1
Haze_20406 Corylus avellana HOM05D001055 ORTHO05D000867 8.9e-10 68.2 164 33.5
BolC2t06847H Brassica oleracea HOM05D001055 ORTHO05D000867 1.2e-09 67.8 172 34.3
BraA02t05415Z Brassica rapa HOM05D001055 ORTHO05D000867 1.2e-09 67.8 172 35.5
Ciclev10025116m.g Citrus clementina HOM05D001055 ORTHO05D000867 1.2e-09 67.8 224 35.7
Nn6g32377 Nelumbo nucifera HOM05D001055 ORTHO05D000867 1.2e-09 67.8 200 30.0
Sabra19G0050500 Salix brachista HOM05D001055 ORTHO05D000867 1.2e-09 67.8 167 34.7
BcaC03g13553 Brassica carinata HOM05D001055 ORTHO05D000867 1.5e-09 67.4 172 34.3
A02p04540 Brassica napus HOM05D001055 ORTHO05D000867 1.5e-09 67.4 172 34.9
C02p09420 Brassica napus HOM05D001055 ORTHO05D000867 1.5e-09 67.4 172 34.9
Ciclev10019408m.g Citrus clementina HOM05D001055 ORTHO05D000867 2.0e-09 67.0 197 33.0
Nitab4.5_0001345g0040 Nicotiana tabacum HOM05D001055 ORTHO05D000867 2.0e-09 67.0 202 31.2
FAN05G2901 Fragaria x ananassa HOM05D001055 ORTHO05D000867 2.6e-09 66.6 167 30.5
FAN05G3280 Fragaria x ananassa HOM05D001055 ORTHO05D000867 2.6e-09 66.6 167 30.5
MD12G1011800 Malus domestica HOM05D001055 ORTHO05D000867 2.6e-09 66.6 167 31.7
Sp6g26390 Schrenkiella parvula HOM05D001055 ORTHO05D000867 2.6e-09 66.6 165 34.5
HPP92_013176 Vanilla planifolia HOM05D001055 ORTHO05D000867 2.6e-09 66.6 184 36.4
VMungo1383G0215 Vigna mungo HOM05D001055 ORTHO05D000867 2.6e-09 66.6 167 33.5
Aqoxy1G00510 Aquilegia oxysepala HOM05D001055 ORTHO05D000867 3.4e-09 66.2 225 32.0
Phvul.001G105500 Phaseolus vulgaris HOM05D001055 ORTHO05D000867 3.4e-09 66.2 167 34.1
CSS0026495 Camellia sinensis var. sinensis HOM05D001055 ORTHO05D000867 4.4e-09 65.9 170 30.6
Duzib177G0672 Durio zibethinus HOM05D001055 ORTHO05D000867 4.4e-09 65.9 169 31.4
Thhalv10016097m.g Eutrema salsugineum HOM05D001055 ORTHO05D000867 4.4e-09 65.9 170 33.5
Glyma.19G117200 Glycine max HOM05D001055 ORTHO05D000867 4.4e-09 65.9 167 32.3
Potri.013G065800 Populus trichocarpa HOM05D001055 ORTHO05D000867 4.4e-09 65.9 200 30.0
Prupe.7G014900 Prunus persica HOM05D001055 ORTHO05D000867 4.4e-09 65.9 175 31.4
Rhsim13G0200200 Rhododendron simsii HOM05D001055 ORTHO05D000867 4.4e-09 65.9 197 34.5
GSVIVG01029961001 Vitis vinifera HOM05D001055 ORTHO05D000867 4.4e-09 65.9 182 31.3
Lsat_1_v5_gn_2_103720 Lactuca sativa HOM05D001055 ORTHO05D000867 5.8e-09 65.5 166 34.9
Manes.09G136600 Manihot esculenta HOM05D001055 ORTHO05D000867 5.8e-09 65.5 173 34.7
BcaB08g36736 Brassica carinata HOM05D001055 ORTHO05D000867 7.6e-09 65.1 172 32.6
FvH4_6g03400 Fragaria vesca HOM05D001055 ORTHO05D000867 7.6e-09 65.1 167 30.5
FAN14G0656 Fragaria x ananassa HOM05D001055 ORTHO05D000867 7.6e-09 65.1 167 30.5
BcaC04g18754 Brassica carinata HOM05D001055 ORTHO05D000867 9.9e-09 64.7 173 32.9
C09p59260 Brassica napus HOM05D001055 ORTHO05D000867 9.9e-09 64.7 173 32.9
BolC9t58767H Brassica oleracea HOM05D001055 ORTHO05D000867 9.9e-09 64.7 172 32.0
Medtr6g027570 Medicago truncatula HOM05D001055 ORTHO05D000867 9.9e-09 64.7 163 35.6
HPP92_012144 Vanilla planifolia HOM05D001055 ORTHO05D000867 9.9e-09 64.7 203 30.5
Lj1g0018384 Lotus japonicus HOM05D001055 ORTHO05D000867 1.3e-08 64.3 211 32.2
A10p21610 Brassica napus HOM05D001055 ORTHO05D000867 1.7e-08 63.9 173 32.4
CSS0007913 Camellia sinensis var. sinensis HOM05D001055 ORTHO05D000867 1.7e-08 63.9 234 33.3
CsaV3_3G040600 Cucumis sativus L. HOM05D001055 ORTHO05D000867 1.7e-08 63.9 168 33.3
arahy.Tifrunner.gnm1.ann1.ISEY34 Arachis hypogaea HOM05D001055 ORTHO05D000867 2.2e-08 63.5 193 31.6
MSTRG.19736 Avicennia marina HOM05D001055 ORTHO05D000867 2.2e-08 63.5 211 32.2
FAN02G0110 Fragaria x ananassa HOM05D001055 ORTHO05D000867 2.2e-08 63.5 165 32.1
HPP92_017657 Vanilla planifolia HOM05D001055 ORTHO05D000867 2.2e-08 63.5 205 31.7
BraA10t44223Z Brassica rapa HOM05D001055 ORTHO05D000867 2.9e-08 63.2 173 31.8
ECA238G4219 Erigeron canadensis HOM05D001055 ORTHO05D000867 2.9e-08 63.2 160 32.5
VMungo0540G0843 Vigna mungo HOM05D001055 ORTHO05D000867 2.9e-08 63.2 171 32.7
BcaB05g23285 Brassica carinata HOM05D001055 ORTHO05D000867 3.8e-08 62.8 170 31.8
Lsat_1_v5_gn_6_31481 Lactuca sativa HOM05D001055 ORTHO05D000867 3.8e-08 62.8 169 30.8
TWI32G1043 Tripterygium wilfordii HOM05D001055 ORTHO05D000867 3.8e-08 62.8 212 31.1
Atru.chr2.1519 Acer truncatum HOM05D001055 ORTHO05D000867 4.9e-08 62.4 177 31.6
Thecc.05G241700 Theobroma cacao HOM05D001055 ORTHO05D000867 4.9e-08 62.4 174 31.0
Atru.chr2.1520 Acer truncatum HOM05D001055 ORTHO05D000867 6.4e-08 62.0 181 32.0
MELO3C009791.2 Cucumis melo HOM05D001055 ORTHO05D000867 6.4e-08 62.0 168 32.7
FAN09G1406 Fragaria x ananassa HOM05D001055 ORTHO05D000867 6.4e-08 62.0 165 31.5
arahy.Tifrunner.gnm1.ann1.MF0PDN Arachis hypogaea HOM05D001055 ORTHO05D000867 8.4e-08 61.6 187 32.1
Ciclev10019448m.g Citrus clementina HOM05D001055 ORTHO05D000867 8.4e-08 61.6 173 31.8
Lj1g0007844 Lotus japonicus HOM05D001055 ORTHO05D000867 1.1e-07 61.2 178 29.8
Os07g0476401 Oryza sativa ssp. japonica HOM05D001055 ORTHO05D000867 1.1e-07 61.2 78 53.8
A10p21620 Brassica napus HOM05D001055 ORTHO05D000867 1.4e-07 60.8 203 32.0
Nitab4.5_0000022g0430 Nicotiana tabacum HOM05D001055 ORTHO05D000867 1.4e-07 60.8 205 28.8
Rhsim03G0049400 Rhododendron simsii HOM05D001055 ORTHO05D000867 1.4e-07 60.8 208 30.3
PGSC0003DMG400024286 Solanum tuberosum HOM05D001055 ORTHO05D000867 1.4e-07 60.8 181 32.0
GSVIVG01037507001 Vitis vinifera HOM05D001055 ORTHO05D000867 1.4e-07 60.8 160 33.1
TWI60G0620 Tripterygium wilfordii HOM05D001055 ORTHO05D000867 1.9e-07 60.5 212 31.1
Aqoxy1G00509 Aquilegia oxysepala HOM05D001055 ORTHO05D000867 2.4e-07 60.1 170 30.6
BcaB05g23283 Brassica carinata HOM05D001055 ORTHO05D000867 2.4e-07 60.1 213 31.0
CAN.G1270.5 Capsicum annuum HOM05D001055 ORTHO05D000867 2.4e-07 60.1 177 31.6
Cc06_g21490 Coffea canephora HOM05D001055 ORTHO05D000867 2.4e-07 60.1 216 28.2
Gohir.A11G228300 Gossypium hirsutum HOM05D001055 ORTHO05D000867 2.4e-07 60.1 169 31.4
QL07p017492 Quercus lobata HOM05D001055 ORTHO05D000867 2.4e-07 60.1 212 30.7
TAR636G1003 Trochodendron aralioides HOM05D001055 ORTHO05D000867 2.4e-07 60.1 179 28.5
BraA10t44224Z Brassica rapa HOM05D001055 ORTHO05D000867 3.2e-07 59.7 203 31.5
Glyma.06G155200 Glycine max HOM05D001055 ORTHO05D000867 3.2e-07 59.7 166 31.3
Os10g0436900 Oryza sativa ssp. japonica HOM05D001055 ORTHO05D000867 3.2e-07 59.7 205 33.7
CANSAT78G1674 Cannabis sativa HOM05D001055 ORTHO05D000867 4.2e-07 59.3 174 31.6
Cfa017713 Carpinus fangiana HOM05D001055 ORTHO05D000867 4.2e-07 59.3 191 30.9
Gohir.D11G240800 Gossypium hirsutum HOM05D001055 ORTHO05D000867 4.2e-07 59.3 169 31.4
Gorai.007G254400 Gossypium raimondii HOM05D001055 ORTHO05D000867 4.2e-07 59.3 169 31.4
HanXRQChr13g0398921 Helianthus annuus HOM05D001055 ORTHO05D000867 4.2e-07 59.3 180 28.3
Nn2g14561 Nelumbo nucifera HOM05D001055 ORTHO05D000867 4.2e-07 59.3 181 32.0
BcaC04g18755 Brassica carinata HOM05D001055 ORTHO05D000867 5.4e-07 58.9 202 32.2
A08p01220 Brassica napus HOM05D001055 ORTHO05D000867 5.4e-07 58.9 230 33.5
BraA02t05413Z Brassica rapa HOM05D001055 ORTHO05D000867 5.4e-07 58.9 202 31.2
BraA08t32173Z Brassica rapa HOM05D001055 ORTHO05D000867 5.4e-07 58.9 230 33.5
RcHm_v2.0_Chr3g0496041 Rosa chinensis HOM05D001055 ORTHO05D000867 5.4e-07 58.9 221 29.0
Cpa.g.sc73.1 Carica papaya HOM05D001055 ORTHO05D000867 7.1e-07 58.5 179 32.4
Medtr7g086690 Medicago truncatula HOM05D001055 ORTHO05D000867 7.1e-07 58.5 213 30.0
TPR.G34791 Trifolium pratense HOM05D001055 ORTHO05D000867 7.1e-07 58.5 208 29.8
BcaC01g01434 Brassica carinata HOM05D001055 ORTHO05D000867 9.3e-07 58.2 233 32.2
C03p91980 Brassica napus HOM05D001055 ORTHO05D000867 9.3e-07 58.2 233 32.2
C09p59270 Brassica napus HOM05D001055 ORTHO05D000867 9.3e-07 58.2 202 32.2
Lsat_1_v5_gn_6_31460 Lactuca sativa HOM05D001055 ORTHO05D000867 9.3e-07 58.2 205 31.2
PSO339G2989 Papaver somniferum HOM05D001055 ORTHO05D000867 9.3e-07 58.2 209 28.7
Potri.019G040301 Populus trichocarpa HOM05D001055 ORTHO05D000867 9.3e-07 58.2 176 28.4
A02p04520 Brassica napus HOM05D001055 ORTHO05D000867 1.2e-06 57.8 202 31.2
Manes.08G152900 Manihot esculenta HOM05D001055 ORTHO05D000867 1.2e-06 57.8 175 29.1
Sed0010688 Sechium edule HOM05D001055 ORTHO05D000867 1.2e-06 57.8 168 31.5
C02p09390 Brassica napus HOM05D001055 ORTHO05D000867 1.6e-06 57.4 202 32.2
BolC9t58768H Brassica oleracea HOM05D001055 ORTHO05D000867 1.6e-06 57.4 202 32.2
Dinv25548 Davidia involucrata HOM05D001055 ORTHO05D000867 1.6e-06 57.4 208 33.7
Duzib128G0202 Durio zibethinus HOM05D001055 ORTHO05D000867 1.6e-06 57.4 168 29.8
CARHR195310 Cardamine hirsuta HOM05D001055 ORTHO05D000867 2.1e-06 57.0 213 30.5
Ca_08315_v3 Cicer arietinum L. HOM05D001055 ORTHO05D000867 2.1e-06 57.0 174 31.6
ClCG10G015870 Citrullus lanatus HOM05D001055 ORTHO05D000867 2.1e-06 57.0 168 31.5
Potri.019G040200 Populus trichocarpa HOM05D001055 ORTHO05D000867 2.1e-06 57.0 207 31.4
THA.LOC104802885 Tarenaya hassleriana HOM05D001055 ORTHO05D000867 2.1e-06 57.0 186 30.1
VMungo1383G1811 Vigna mungo HOM05D001055 ORTHO05D000867 2.1e-06 57.0 195 28.2
BolC3t21518H Brassica oleracea HOM05D001055 ORTHO05D000867 2.7e-06 56.6 233 31.8
Hma1.2p1_0526F.1_g172900 Hydrangea macrophylla HOM05D001055 ORTHO05D000867 2.7e-06 56.6 167 28.7
Psat3g086600 Pisum sativum HOM05D001055 ORTHO05D000867 2.7e-06 56.6 200 29.5
Atru.chr1.4013 Acer truncatum HOM05D001055 ORTHO05D000867 3.5e-06 56.2 238 30.7
Aa31LG11G11730 Aethionema arabicum HOM05D001055 ORTHO05D000867 3.5e-06 56.2 201 29.4
CANSAT78G1312 Cannabis sativa HOM05D001055 ORTHO05D000867 3.5e-06 56.2 162 33.3
Nitab4.5_0005404g0030 Nicotiana tabacum HOM05D001055 ORTHO05D000867 3.5e-06 56.2 173 26.6
CAN.G1870.6 Capsicum annuum HOM05D001055 ORTHO05D000867 4.6e-06 55.8 167 26.9
AUR62025258 Chenopodium quinoa HOM05D001055 ORTHO05D000867 4.6e-06 55.8 217 29.5
PSO063G0834 Papaver somniferum HOM05D001055 ORTHO05D000867 4.6e-06 55.8 189 27.5
Potri.013G065900 Populus trichocarpa HOM05D001055 ORTHO05D000867 6.0e-06 55.5 176 28.4
Sed0015209 Sechium edule HOM05D001055 ORTHO05D000867 6.0e-06 55.5 168 30.4
BcaC03g13549 Brassica carinata HOM05D001055 ORTHO05D000867 7.8e-06 55.1 202 31.7
BolC2t06846H Brassica oleracea HOM05D001055 ORTHO05D000867 7.8e-06 55.1 202 30.7
SMO117G0189 Selaginella moellendorffii HOM05D001055 ORTHO05D000867 7.8e-06 55.1 243 27.2
THA.LOC104820794 Tarenaya hassleriana HOM05D001055 ORTHO05D000867 7.8e-06 55.1 166 30.7


User provided reference genes

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