Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 2.6e-136 489.2 338 100.0
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 5.8e-72 275.4 337 58.5
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 3.5e-16 90.1 262 32.4
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 7.7e-16 89.0 257 45.9
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.5e-14 84.7 248 31.5
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 3.3e-14 83.6 276 30.1
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 1.2e-13 81.6 266 28.6
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 3.6e-13 80.1 241 28.2
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.0e-12 78.6 300 28.0
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.4e-12 78.2 258 28.7
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 3.0e-12 77.0 250 28.4
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 3.0e-12 77.0 348 26.4
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 4.0e-12 76.6 239 28.9
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 8.9e-12 75.5 236 28.4
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.5e-11 74.7 240 29.2
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 2.0e-11 74.3 259 28.6
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 2.6e-11 73.9 247 28.3
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 2.6e-11 73.9 274 27.7
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 2.6e-11 73.9 248 29.4
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.7e-11 72.8 249 27.7
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 5.7e-11 72.8 243 27.6
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 5.7e-11 72.8 242 29.3
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 9.8e-11 72.0 247 27.5
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.7e-10 71.2 255 25.5
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.2e-10 70.9 249 27.3
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 2.8e-10 70.5 242 26.4
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 2.8e-10 70.5 267 27.0
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 2.8e-10 70.5 255 26.7
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.8e-10 70.5 277 26.4
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 3.7e-10 70.1 267 27.7
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 4.9e-10 69.7 269 27.1
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 4.9e-10 69.7 245 27.8
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 6.3e-10 69.3 66 42.4
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 8.3e-10 68.9 274 26.6
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.1e-09 68.6 255 24.7
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.1e-09 68.6 255 24.7
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.4e-09 68.2 237 26.2
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 1.4e-09 68.2 247 30.4
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.8e-09 67.8 255 26.7
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 1.8e-09 67.8 87 44.8
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 2.4e-09 67.4 245 24.9
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.4e-09 67.4 276 25.4
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 4.1e-09 66.6 237 25.7
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.4e-09 66.2 240 30.4
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 5.4e-09 66.2 255 32.2
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 7.0e-09 65.9 250 26.0
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 9.2e-09 65.5 60 46.7
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 9.2e-09 65.5 245 28.6
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 9.2e-09 65.5 227 26.9
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.2e-08 65.1 257 24.9
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 1.6e-08 64.7 234 26.1
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.6e-08 64.7 252 27.0
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 2.7e-08 63.9 226 26.5
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 4.5e-08 63.2 245 27.3
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 4.5e-08 63.2 252 26.6
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 5.9e-08 62.8 246 26.0
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 5.9e-08 62.8 336 26.2
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 7.8e-08 62.4 241 27.0
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.0e-07 62.0 260 25.8
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.3e-07 61.6 268 25.7
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.7e-07 61.2 224 25.9
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.7e-07 61.2 265 25.3
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 2.3e-07 60.8 236 26.3
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 2.3e-07 60.8 83 37.3
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 2.3e-07 60.8 268 26.5
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 2.3e-07 60.8 246 26.8
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 2.9e-07 60.5 252 26.2
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 3.8e-07 60.1 241 34.9
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 3.8e-07 60.1 60 48.3
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 5.0e-07 59.7 239 28.0
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 6.6e-07 59.3 234 24.8
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 6.6e-07 59.3 261 25.7
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 8.6e-07 58.9 251 33.1
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 1.1e-06 58.5 235 26.4
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 1.1e-06 58.5 49 55.1
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 1.5e-06 58.2 265 26.4
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 1.5e-06 58.2 259 24.3
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 1.5e-06 58.2 231 25.1
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 1.5e-06 58.2 234 25.2
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 1.9e-06 57.8 77 42.9
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.9e-06 57.8 277 24.5
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.9e-06 57.8 277 24.5
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 2.5e-06 57.4 254 26.4
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 4.3e-06 56.6 58 46.6
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 5.6e-06 56.2 261 26.8
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 7.3e-06 55.8 268 22.0
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 9.5e-06 55.5 240 26.2
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 9.5e-06 55.5 240 25.4


User provided reference genes

Program Settings