Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 3.1e-173 611.7 301 100.0
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 1.1e-111 407.1 265 80.4
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 4.1e-61 239.2 248 54.0
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 7.8e-60 235.0 237 56.1
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 1.0e-59 234.6 237 56.1
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 3.0e-59 233.0 226 57.1
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 3.9e-59 232.6 220 55.9
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 5.0e-59 232.3 227 57.3
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 4.3e-58 229.2 226 55.8
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 3.6e-57 226.1 248 52.4
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 1.1e-56 224.6 227 53.7
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.1e-56 224.6 248 51.6
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 1.1e-56 224.6 249 51.8
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.2e-56 222.2 225 53.8
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 5.2e-56 222.2 230 53.5
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 2.0e-55 220.3 237 51.9
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 2.0e-55 220.3 247 50.6
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 2.6e-55 219.9 253 52.6
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 2.6e-55 219.9 236 53.8
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 4.4e-55 219.2 226 53.1
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 1.3e-54 217.6 240 49.6
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 1.7e-54 217.2 224 53.6
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 2.9e-54 216.5 230 52.6
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 4.9e-54 215.7 245 50.2
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 8.3e-54 214.9 226 52.7
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 1.1e-53 214.5 226 52.2
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 1.4e-53 214.2 225 54.2
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 1.9e-53 213.8 279 46.6
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 3.2e-53 213.0 222 50.9
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 4.1e-53 212.6 252 47.6
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 4.1e-53 212.6 250 50.8
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 5.4e-53 212.2 232 51.7
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 5.4e-53 212.2 225 52.0
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 5.4e-53 212.2 246 50.4
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 9.2e-53 211.5 265 49.1
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 1.2e-52 211.1 222 52.3
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 2.1e-52 210.3 239 50.2
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 4.6e-52 209.1 226 54.0
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 4.6e-52 209.1 244 48.0
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 7.8e-52 208.4 247 48.2
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 7.8e-52 208.4 252 47.6
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 7.8e-52 208.4 252 48.8
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 7.8e-52 208.4 245 47.8
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 1.0e-51 208.0 265 49.1
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.7e-51 207.2 246 48.0
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 2.3e-51 206.8 247 49.0
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 2.3e-51 206.8 247 50.6
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 2.3e-51 206.8 248 49.2
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 3.0e-51 206.5 257 47.5
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 3.9e-51 206.1 248 48.8
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 5.1e-51 205.7 246 47.6
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 5.1e-51 205.7 246 47.2
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 1.5e-50 204.1 224 49.6
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 1.9e-50 203.8 254 48.8
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 1.9e-50 203.8 253 48.6
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 1.9e-50 203.8 254 46.5
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.9e-50 203.8 266 48.9
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 4.3e-50 202.6 254 48.4
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 5.6e-50 202.2 236 47.5
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 5.6e-50 202.2 248 47.6
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 7.3e-50 201.8 224 49.1
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 9.5e-50 201.4 257 45.9
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 1.2e-49 201.1 263 46.8
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.6e-49 200.7 218 50.5
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.1e-49 200.3 261 49.4
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 2.1e-49 200.3 249 47.8
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 2.1e-49 200.3 232 48.7
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 4.7e-49 199.1 225 49.8
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 4.7e-49 199.1 228 49.6
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 8.1e-49 198.4 228 49.1
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 8.1e-49 198.4 213 50.7
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 8.1e-49 198.4 252 48.4
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 1.1e-48 198.0 228 48.7
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 2.3e-48 196.8 255 47.5
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 3.1e-48 196.4 230 48.7
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 3.1e-48 196.4 225 48.0
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 5.2e-48 195.7 268 48.5
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 1.5e-47 194.1 228 48.7
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 1.5e-47 194.1 228 48.7
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.0e-47 193.7 271 47.2
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 3.4e-47 193.0 216 50.0
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 4.4e-47 192.6 270 46.3
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 2.2e-46 190.3 213 51.2
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 1.1e-45 188.0 226 49.1
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.9e-45 187.2 220 49.5
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 3.2e-45 186.4 247 45.7
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 4.1e-45 186.0 223 50.7
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.6e-44 184.1 244 46.3
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 6.6e-43 178.7 269 42.8
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 1.5e-42 177.6 233 42.5
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 4.3e-42 176.0 243 46.1
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 5.6e-42 175.6 243 46.1
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.6e-41 174.1 254 45.3
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 6.2e-41 172.2 204 49.0
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 2.4e-40 170.2 229 44.1
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.2e-37 159.8 244 43.9
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 1.2e-36 157.9 197 48.2
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 1.7e-35 154.1 246 39.0
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 1.6e-33 147.5 156 54.5
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 1.3e-30 137.9 264 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 8.4e-30 135.2 191 42.9
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 1.9e-29 134.0 230 39.6
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.3e-27 127.9 141 47.5
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 2.5e-26 123.6 142 50.7
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 3.6e-25 119.8 140 50.0
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 4.0e-24 116.3 264 33.7
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 9.0e-24 115.2 249 36.1
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 1.2e-23 114.8 209 39.2
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 2.5e-18 97.1 65 66.2
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 6.2e-17 92.4 156 39.7
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 1.8e-16 90.9 67 58.2
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 1.8e-11 74.3 64 64.1


User provided reference genes

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