Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 1.3e-163 579.7 294 100.0
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 3.3e-124 448.7 241 91.7
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 1.6e-105 386.7 298 67.8
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 7.7e-105 384.4 262 73.7
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 3.3e-103 379.0 292 68.8
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 4.3e-103 378.6 288 69.1
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 7.3e-103 377.9 228 79.8
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 9.5e-103 377.5 280 70.0
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 1.2e-102 377.1 286 69.6
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 2.8e-102 375.9 259 73.0
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 4.7e-102 375.2 276 69.9
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 4.7e-102 375.2 273 69.6
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 6.1e-102 374.8 259 72.6
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 8.0e-102 374.4 236 75.8
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 1.4e-101 373.6 295 66.8
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 1.8e-101 373.2 302 65.6
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 1.8e-101 373.2 262 71.4
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 2.3e-101 372.9 292 66.4
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 2.3e-101 372.9 283 67.8
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 4.0e-101 372.1 282 68.4
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 4.0e-101 372.1 287 67.6
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 6.8e-101 371.3 288 67.4
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 8.9e-101 370.9 290 65.5
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 8.9e-101 370.9 298 66.1
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 1.5e-100 370.2 286 67.5
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 1.5e-100 370.2 279 68.8
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 2.0e-100 369.8 264 71.6
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 2.6e-100 369.4 236 76.7
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 2.6e-100 369.4 289 66.1
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 3.4e-100 369.0 300 65.0
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 4.4e-100 368.6 284 68.3
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 7.5e-100 367.9 242 74.8
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 1.7e-99 366.7 262 72.1
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 1.7e-99 366.7 293 64.8
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 2.2e-99 366.3 292 65.1
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.2e-99 366.3 298 67.1
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 2.2e-99 366.3 298 67.1
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 2.9e-99 365.9 277 67.1
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 2.9e-99 365.9 228 78.1
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 3.7e-99 365.5 291 65.3
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 3.7e-99 365.5 286 66.1
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 4.9e-99 365.2 279 67.4
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 6.4e-99 364.8 254 72.4
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 1.4e-98 363.6 288 67.0
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 3.2e-98 362.5 293 65.2
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 3.2e-98 362.5 298 66.4
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 4.1e-98 362.1 302 64.6
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 5.4e-98 361.7 240 73.8
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 5.4e-98 361.7 232 75.0
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 7.0e-98 361.3 288 64.9
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 7.0e-98 361.3 302 63.2
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 9.2e-98 360.9 290 64.1
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 9.2e-98 360.9 264 69.7
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 1.2e-97 360.5 291 66.7
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 1.2e-97 360.5 291 66.7
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 1.2e-97 360.5 291 66.7
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 1.2e-97 360.5 292 64.7
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 1.2e-97 360.5 322 61.5
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 1.6e-97 360.1 291 65.6
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 1.6e-97 360.1 277 66.1
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 2.7e-97 359.4 289 64.0
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 2.7e-97 359.4 291 64.6
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 2.7e-97 359.4 276 67.0
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 2.7e-97 359.4 240 74.2
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 3.5e-97 359.0 290 65.5
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 4.6e-97 358.6 237 73.8
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.0e-96 357.5 261 70.5
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 1.7e-96 356.7 286 66.4
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 1.7e-96 356.7 254 70.1
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 5.0e-96 355.1 293 64.2
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 8.6e-96 354.4 237 71.3
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 1.1e-95 354.0 232 73.7
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 1.5e-95 353.6 289 64.7
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 1.9e-95 353.2 272 66.9
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 3.3e-95 352.4 259 70.3
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 4.3e-95 352.1 266 68.4
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 7.3e-95 351.3 282 67.7
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 9.5e-95 350.9 295 63.1
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 1.2e-94 350.5 285 64.9
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 5.2e-93 345.1 224 73.2
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 5.2e-93 345.1 239 71.5
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 8.9e-93 344.4 293 65.9
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 8.9e-93 344.4 236 69.9
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 1.5e-92 343.6 257 68.1
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 1.3e-91 340.5 247 68.4
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 6.6e-88 328.2 266 68.4
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 1.2e-86 323.9 233 67.8
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 4.7e-86 322.0 248 69.4
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 3.4e-84 315.8 257 65.8
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.2e-83 313.2 238 66.8
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 4.9e-83 312.0 238 66.8
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 6.4e-83 311.6 293 59.4
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 5.1e-80 302.0 242 65.3
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 5.1e-80 302.0 249 62.7
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 5.1e-72 275.4 204 68.6
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 1.9e-71 273.5 200 68.0
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 9.6e-71 271.2 182 71.4
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 1.6e-70 270.4 209 67.0
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 8.9e-69 264.6 286 51.4
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 1.1e-61 241.1 220 58.2
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 2.2e-59 233.4 272 50.7
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 9.9e-52 208.0 299 44.8
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 9.6e-47 191.4 182 58.2
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 2.1e-46 190.3 192 57.3
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 2.0e-44 183.7 117 76.9
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 1.7e-43 180.6 111 78.4
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 1.7e-43 180.6 113 77.0
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 2.6e-36 156.8 111 68.5
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 1.5e-31 141.0 216 38.9
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 5.5e-26 122.5 75 80.0
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 2.2e-22 110.5 219 35.2
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 2.8e-22 110.2 255 34.5
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 6.3e-22 109.0 245 35.9
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 3.1e-13 80.1 63 66.7
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 2.5e-10 70.5 188 31.9
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 4.2e-10 69.7 205 29.8
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.2e-09 68.2 182 33.0
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.8e-08 64.3 180 32.2
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 8.8e-08 62.0 190 31.6
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.5e-07 61.2 183 31.1
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 1.5e-07 61.2 226 27.4
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 2.0e-07 60.8 180 31.7
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 2.6e-07 60.5 46 67.4
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.3e-07 60.1 180 31.7
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 4.4e-07 59.7 194 26.8
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 5.7e-07 59.3 224 27.2
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 5.7e-07 59.3 224 27.2
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 7.5e-07 58.9 33 69.7
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 9.7e-07 58.5 194 27.8
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 1.3e-06 58.2 183 29.0
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 1.3e-06 58.2 185 27.6
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.7e-06 57.8 227 26.9
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 2.2e-06 57.4 226 27.0
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.8e-06 57.0 181 29.3
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 4.8e-06 56.2 186 29.0
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 6.3e-06 55.8 187 27.8
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 6.3e-06 55.8 180 30.6
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 6.3e-06 55.8 181 29.3
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 8.2e-06 55.5 226 26.1


User provided reference genes

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