Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb358520 Zea mays HOM05D004117 ORTHO05D004520 6.7e-243 843.6 420 100.0
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 1.1e-54 218.4 121 90.9
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 1.1e-46 191.8 120 79.2
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 2.6e-45 187.2 120 78.3
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 7.5e-45 185.7 119 78.2
TAR030G0002 Trochodendron aralioides HOM05D004117 ORTHO05D004520 2.2e-44 184.1 120 77.5
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 6.4e-44 182.6 120 76.7
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 8.3e-44 182.2 120 75.8
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 1.1e-43 181.8 120 76.7
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 1.9e-43 181.0 120 77.5
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 5.4e-43 179.5 120 77.5
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 1.2e-42 178.3 119 77.3
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 2.1e-42 177.6 120 76.7
Zm00001eb317340 Zea mays HOM05D004117 ORTHO05D004520 2.7e-42 177.2 92 93.5
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 3.5e-42 176.8 120 75.8
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 4.6e-42 176.4 120 76.7
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 6.0e-42 176.0 120 72.5
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 6.0e-42 176.0 120 73.3
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 1.3e-41 174.9 120 75.8
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 1.7e-41 174.5 120 77.5
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 1.7e-41 174.5 131 71.0
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 2.3e-41 174.1 120 73.3
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 2.3e-41 174.1 120 73.3
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 5.1e-41 172.9 119 75.6
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 5.1e-41 172.9 120 73.3
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 5.1e-41 172.9 120 73.3
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 6.6e-41 172.6 120 73.3
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 6.6e-41 172.6 120 73.3
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 6.6e-41 172.6 120 73.3
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 6.6e-41 172.6 120 74.2
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 6.6e-41 172.6 120 74.2
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 6.6e-41 172.6 120 74.2
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 6.6e-41 172.6 120 74.2
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 6.6e-41 172.6 120 73.3
COL.COLO4_33652 Corchorus olitorius HOM05D004117 ORTHO05D004520 6.6e-41 172.6 117 75.2
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 6.6e-41 172.6 120 73.3
CAN.G803.15 Capsicum annuum HOM05D004117 ORTHO05D004520 8.6e-41 172.2 120 74.2
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 8.6e-41 172.2 119 73.1
Rhsim06G0124300 Rhododendron simsii HOM05D004117 ORTHO05D004520 8.6e-41 172.2 119 75.6
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 1.1e-40 171.8 120 73.3
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 1.5e-40 171.4 120 73.3
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 1.5e-40 171.4 118 75.4
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 1.9e-40 171.0 120 72.5
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 2.5e-40 170.6 120 72.5
DCAR_014033 Daucus carota HOM05D004117 ORTHO05D004520 2.5e-40 170.6 120 72.5
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 3.3e-40 170.2 120 71.7
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 3.3e-40 170.2 120 72.5
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 4.3e-40 169.9 120 74.2
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 5.6e-40 169.5 120 70.0
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 5.6e-40 169.5 119 72.3
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 7.3e-40 169.1 120 70.0
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 7.3e-40 169.1 119 72.3
QL08p042899 Quercus lobata HOM05D004117 ORTHO05D004520 7.3e-40 169.1 120 72.5
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 7.3e-40 169.1 120 72.5
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 7.3e-40 169.1 120 72.5
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 9.5e-40 168.7 119 77.3
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 9.5e-40 168.7 120 73.3
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 9.5e-40 168.7 119 74.8
DCAR_010149 Daucus carota HOM05D004117 ORTHO05D004520 1.2e-39 168.3 120 71.7
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 1.2e-39 168.3 120 70.0
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 1.2e-39 168.3 120 73.3
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 2.1e-39 167.5 120 71.7
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 2.8e-39 167.2 120 72.5
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 3.6e-39 166.8 120 71.7
Ciclev10017482m.g Citrus clementina HOM05D004117 ORTHO05D004520 3.6e-39 166.8 116 73.3
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 3.6e-39 166.8 120 72.5
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 3.6e-39 166.8 120 72.5
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 3.6e-39 166.8 120 72.5
Nitab4.5_0005259g0030 Nicotiana tabacum HOM05D004117 ORTHO05D004520 3.6e-39 166.8 126 71.4
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 3.6e-39 166.8 120 70.8
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 3.6e-39 166.8 124 67.7
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 3.6e-39 166.8 120 70.8
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 4.7e-39 166.4 119 70.6
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 4.7e-39 166.4 119 69.7
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 6.2e-39 166.0 120 71.7
SalBow7G2879 Salvia bowleyana HOM05D004117 ORTHO05D004520 6.2e-39 166.0 120 72.5
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 8.1e-39 165.6 119 70.6
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 8.1e-39 165.6 155 58.1
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 1.1e-38 165.2 124 68.5
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 1.4e-38 164.9 119 70.6
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 1.4e-38 164.9 119 70.6
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 1.4e-38 164.9 120 70.8
FAN09G0194 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.8e-38 164.5 124 67.7
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 1.8e-38 164.5 124 65.3
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 1.8e-38 164.5 120 70.8
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 1.8e-38 164.5 119 68.9
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 2.4e-38 164.1 120 68.3
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 2.4e-38 164.1 120 70.8
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 3.1e-38 163.7 119 70.6
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 4.0e-38 163.3 120 72.5
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 4.0e-38 163.3 124 66.9
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 4.0e-38 163.3 124 66.9
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 5.2e-38 162.9 124 66.9
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 5.2e-38 162.9 120 72.5
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 5.2e-38 162.9 120 72.5
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 5.2e-38 162.9 119 72.3
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 1.5e-37 161.4 119 67.2
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 2.6e-37 160.6 113 72.6
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 3.4e-37 160.2 119 66.4
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 3.4e-37 160.2 120 69.2
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 3.4e-37 160.2 117 70.1
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 3.4e-37 160.2 121 66.1
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 4.4e-37 159.8 119 70.6
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 1.3e-36 158.3 119 68.9
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 1.7e-36 157.9 149 61.1
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 2.9e-36 157.1 144 60.4
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 3.8e-36 156.8 144 60.4
Os01g0749900 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 8.4e-36 155.6 118 67.8
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 8.4e-36 155.6 119 64.7
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 1.4e-35 154.8 120 66.7
SalBow7G1867 Salvia bowleyana HOM05D004117 ORTHO05D004520 1.4e-35 154.8 137 62.8
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.9e-35 154.5 139 60.4
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.9e-35 154.5 139 60.4
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 4.2e-35 153.3 118 66.9
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 1.2e-34 151.8 149 57.0
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 1.6e-34 151.4 120 67.5
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 2.7e-34 150.6 134 64.2
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 1.7e-33 147.9 117 65.8
Zm00001eb270990 Zea mays HOM05D004117 ORTHO05D004520 2.3e-33 147.5 78 96.2
vmacro12419 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 7.3e-32 142.5 195 47.2
Nitab4.5_0003133g0050 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.1e-31 141.0 165 52.7
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 9.0e-30 135.6 100 68.0
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 5.8e-29 132.9 98 69.4
Os06g0153200 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 3.8e-28 130.2 72 84.7
MBI06_g18691_MAGBIO Magnolia biondii HOM05D004117 ORTHO05D004520 1.9e-27 127.9 114 67.5
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 6.0e-26 122.9 104 58.7
Nitab4.5_0003479g0010 Nicotiana tabacum HOM05D004117 ORTHO05D004520 4.3e-24 116.7 100 64.0
unitig_62.g23112 Utricularia gibba HOM05D004117 ORTHO05D004520 2.1e-18 97.8 118 48.3
Nitab4.5_0000990g0060 Nicotiana tabacum HOM05D004117 ORTHO05D004520 1.3e-17 95.1 108 53.7
Cre07.g330850 Chlamydomonas reinhardtii HOM05D004117 ORTHO05D004520 3.0e-17 94.0 119 44.5
PRCOL_00002587 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 6.7e-17 92.8 119 42.0
Haze_13437 Corylus avellana HOM05D013182 ORTHO05D004520 1.3e-15 88.6 71 60.6
HanXRQChr04g0105921 Helianthus annuus HOM05D004117 ORTHO05D004520 2.4e-14 84.3 71 57.7
arahy.Tifrunner.gnm1.ann1.HC0VLG Arachis hypogaea HOM05D004117 ORTHO05D004520 3.1e-14 84.0 48 87.5
FvH4_6g27890 Fragaria vesca HOM05D004117 ORTHO05D004520 3.1e-14 84.0 71 57.7
Ah.01g004740 Amaranthus hybridus HOM05D004117 ORTHO05D004520 5.3e-14 83.2 49 89.8
BcaC07g36812 Brassica carinata HOM05D004117 ORTHO05D004520 6.9e-14 82.8 49 87.8
AUR62031790 Chenopodium quinoa HOM05D004117 ORTHO05D004520 1.2e-13 82.0 49 87.8
MCO15G049 Micromonas commoda HOM05D004117 ORTHO05D004520 2.0e-13 81.3 116 37.9
Zm00001eb153320 Zea mays HOM05D004117 ORTHO05D004520 2.6e-13 80.9 71 54.9
SEGI_15129 Sequoiadendron giganteum HOM05D004117 ORTHO05D004520 7.6e-13 79.3 82 48.8
Thecc.07G168800 Theobroma cacao HOM05D004117 ORTHO05D004520 6.4e-12 76.3 69 58.0
Lsat_1_v5_gn_5_110861 Lactuca sativa HOM05D002313 ORTHO05D004520 1.1e-11 75.5 48 81.2
CBR_g22972 Chara braunii HOM05D000004 ORTHO05D000002 1.9e-11 74.7 105 39.0
arahy.Tifrunner.gnm1.ann1.PX7MES Arachis hypogaea HOM05D004117 ORTHO05D004520 1.2e-10 72.0 44 84.1
CSS0019423 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 1.6e-10 71.6 71 50.7
CSS0038404 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 3.0e-09 67.4 59 54.2
PRCOL_00000399 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 3.7e-07 60.5 117 32.5
MSTRG.19599 Avicennia marina HOM05D000753 ORTHO05D001988 6.2e-07 59.7 119 29.4
TWI34G1896 Tripterygium wilfordii HOM05D000753 ORTHO05D001988 8.2e-07 59.3 120 30.0
Peaxi162Scf00436g00001 Petunia axillaris HOM05D000753 ORTHO05D001988 1.8e-06 58.2 120 30.0
TWI32G0112 Tripterygium wilfordii HOM05D000753 ORTHO05D001988 4.0e-06 57.0 119 29.4
Cc06_g08570 Coffea canephora HOM05D000753 ORTHO05D001988 5.3e-06 56.6 119 28.6
Os03g0622700 Oryza sativa ssp. japonica HOM05D000753 ORTHO05D001988 6.9e-06 56.2 127 28.3
TWI63G0342 Tripterygium wilfordii HOM05D000753 ORTHO05D001988 9.0e-06 55.8 119 29.4


User provided reference genes

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