Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 4.1e-109 398.3 231 100.0
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 1.3e-43 180.6 235 46.8
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 6.9e-32 141.7 222 40.5
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 9.0e-32 141.4 223 40.8
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 2.0e-31 140.2 218 41.3
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 3.4e-31 139.4 222 39.6
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 7.6e-31 138.3 224 38.8
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 7.6e-31 138.3 219 40.2
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 2.2e-30 136.7 220 39.5
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 2.9e-30 136.3 220 42.7
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 4.9e-30 135.6 226 39.4
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 4.9e-30 135.6 219 40.2
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 4.9e-30 135.6 220 40.5
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 8.4e-30 134.8 223 39.5
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 1.1e-29 134.4 225 40.0
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 1.1e-29 134.4 225 39.1
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 1.4e-29 134.0 222 38.3
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 1.9e-29 133.7 223 39.0
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 2.4e-29 133.3 226 39.8
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 3.2e-29 132.9 216 39.8
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 5.4e-29 132.1 223 38.6
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 7.1e-29 131.7 213 41.3
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 9.3e-29 131.3 222 39.6
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 9.3e-29 131.3 222 40.5
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 9.3e-29 131.3 218 37.6
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 9.3e-29 131.3 223 41.7
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 9.3e-29 131.3 223 39.9
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 1.2e-28 131.0 223 41.3
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 1.6e-28 130.6 224 43.8
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 1.6e-28 130.6 220 39.1
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 2.1e-28 130.2 224 38.4
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 2.1e-28 130.2 224 45.1
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 2.1e-28 130.2 213 39.9
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 2.7e-28 129.8 223 38.1
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 2.7e-28 129.8 221 38.9
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 2.7e-28 129.8 219 39.3
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 6.0e-28 128.6 222 40.1
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 6.0e-28 128.6 232 39.2
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 6.0e-28 128.6 223 38.6
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 1.3e-27 127.5 215 39.5
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 1.3e-27 127.5 222 38.7
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 1.8e-27 127.1 218 37.6
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 3.0e-27 126.3 214 38.8
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 3.9e-27 125.9 224 37.5
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 3.9e-27 125.9 234 40.6
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 3.9e-27 125.9 227 37.4
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 3.9e-27 125.9 227 37.4
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 5.1e-27 125.6 219 37.9
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 5.1e-27 125.6 214 37.9
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 5.1e-27 125.6 216 37.5
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 1.5e-26 124.0 227 37.4
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 1.5e-26 124.0 219 37.4
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 1.5e-26 124.0 225 36.9
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 1.9e-26 123.6 215 37.2
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 3.3e-26 122.9 224 37.1
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 4.3e-26 122.5 222 36.9
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 4.3e-26 122.5 225 36.4
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 5.6e-26 122.1 222 42.8
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 5.6e-26 122.1 223 39.0
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 9.6e-26 121.3 219 38.4
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 1.6e-25 120.6 220 46.8
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.8e-25 119.8 214 38.8
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 3.7e-25 119.4 218 39.4
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 3.7e-25 119.4 217 36.9
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 3.7e-25 119.4 237 33.8
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 4.8e-25 119.0 224 37.1
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 4.8e-25 119.0 242 36.4
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 8.1e-25 118.2 222 36.0
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 1.4e-24 117.5 238 45.0
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 1.8e-24 117.1 226 41.2
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 1.8e-24 117.1 222 36.5
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.4e-24 116.7 224 37.5
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 3.1e-24 116.3 229 38.0
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 4.0e-24 115.9 216 38.9
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 4.0e-24 115.9 229 45.0
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 9.0e-24 114.8 220 36.4
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.5e-23 114.0 216 37.5
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 2.6e-23 113.2 214 36.9
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.6e-23 113.2 214 36.9
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 2.6e-23 113.2 219 35.6
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 3.4e-23 112.8 212 46.2
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 5.8e-23 112.1 223 37.2
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 1.3e-22 110.9 221 34.8
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 1.7e-22 110.5 136 46.3
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 1.7e-22 110.5 144 44.4
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 2.9e-22 109.8 225 40.0
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 2.9e-22 109.8 140 48.6
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 3.8e-22 109.4 224 34.4
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 4.9e-22 109.0 228 33.3
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 1.1e-21 107.8 136 46.3
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 2.5e-21 106.7 219 32.4
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 9.3e-21 104.8 131 44.3
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 1.6e-20 104.0 218 38.1
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 2.1e-20 103.6 230 39.1
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 2.7e-20 103.2 131 47.3
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 2.7e-20 103.2 140 45.0
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 3.5e-20 102.8 218 32.1
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 3.5e-20 102.8 129 47.3
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 4.6e-20 102.4 220 43.2
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 1.3e-19 100.9 218 39.0
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 3.9e-19 99.4 140 42.9
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 3.3e-18 96.3 126 44.4
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 5.6e-18 95.5 126 44.4
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 7.4e-18 95.1 130 45.4
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 4.0e-16 89.4 142 47.2
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 4.9e-14 82.4 232 32.8
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 1.4e-13 80.9 232 27.2
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 3.3e-10 69.7 226 28.8
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 5.7e-10 68.9 174 32.8
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 9.7e-10 68.2 241 29.0
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 3.4e-07 59.7 54 50.0
MCO07G657 Micromonas commoda HOM05D000984 ORTHO05D001096 3.4e-07 59.7 86 34.9
CBR_g17172 Chara braunii HOM05D006456 ORTHO05D007588 6.5e-06 55.5 86 39.5


User provided reference genes

Program Settings