Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 2.4e-99 365.5 187 100.0
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 8.2e-92 340.5 185 93.5
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 4.1e-75 285.0 184 80.4
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 4.1e-35 152.1 190 48.9
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 9.2e-35 151.0 191 49.2
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 3.5e-34 149.1 186 47.3
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 1.0e-33 147.5 194 48.5
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 3.0e-33 146.0 194 49.0
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 3.0e-33 146.0 188 47.3
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.0e-33 145.2 186 47.8
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 6.6e-33 144.8 195 48.2
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 1.1e-32 144.1 190 48.4
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 1.1e-32 144.1 190 45.8
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.1e-32 144.1 186 46.8
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 1.5e-32 143.7 194 47.9
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 1.9e-32 143.3 188 46.8
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 4.3e-32 142.1 191 48.2
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 7.3e-32 141.4 188 46.3
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 9.5e-32 141.0 187 46.5
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 9.5e-32 141.0 184 45.7
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.2e-31 140.6 189 45.5
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 2.1e-31 139.8 187 47.1
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.1e-31 139.8 187 47.1
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 3.6e-31 139.0 185 46.5
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 4.7e-31 138.7 185 47.0
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 4.7e-31 138.7 186 46.8
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.4e-30 137.1 184 45.7
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.4e-30 137.1 192 47.4
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.4e-30 137.1 184 47.3
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.4e-30 137.1 189 45.0
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 1.8e-30 136.7 184 43.5
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.8e-30 136.7 184 43.5
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 1.8e-30 136.7 191 44.5
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 1.8e-30 136.7 185 47.0
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.3e-30 136.3 190 47.9
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.3e-30 136.3 186 46.8
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.3e-30 136.3 191 44.0
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.3e-30 136.3 184 45.1
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 2.3e-30 136.3 200 46.0
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.3e-30 136.3 183 46.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 3.1e-30 136.0 185 44.9
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 3.1e-30 136.0 190 44.7
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 3.1e-30 136.0 184 46.7
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.1e-30 136.0 184 45.7
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 3.1e-30 136.0 184 44.6
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 4.0e-30 135.6 191 44.0
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 5.2e-30 135.2 187 46.5
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 6.8e-30 134.8 184 44.0
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 6.8e-30 134.8 189 43.4
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 8.9e-30 134.4 186 46.2
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 8.9e-30 134.4 184 45.1
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 8.9e-30 134.4 186 44.6
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 1.2e-29 134.0 184 44.6
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.2e-29 134.0 201 45.8
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 1.2e-29 134.0 184 46.2
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 1.5e-29 133.7 184 43.5
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 1.5e-29 133.7 189 43.9
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 1.5e-29 133.7 188 44.1
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 1.5e-29 133.7 187 43.3
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.5e-29 133.7 190 43.7
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.0e-29 133.3 186 45.7
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 2.0e-29 133.3 184 44.6
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.0e-29 133.3 183 42.1
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 2.0e-29 133.3 192 42.7
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.4e-29 132.5 184 42.4
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 4.4e-29 132.1 185 44.9
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 5.8e-29 131.7 197 43.7
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 5.8e-29 131.7 187 42.8
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.3e-28 130.6 195 44.6
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 1.7e-28 130.2 191 41.9
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 2.2e-28 129.8 193 45.6
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.9e-28 129.4 189 43.9
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 2.9e-28 129.4 193 44.0
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 2.9e-28 129.4 190 43.7
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 2.9e-28 129.4 200 46.0
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 3.7e-28 129.0 187 42.2
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 3.7e-28 129.0 193 44.0
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 6.4e-28 128.3 192 44.8
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 6.4e-28 128.3 186 44.6
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.1e-27 127.5 184 41.8
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.1e-27 127.5 186 44.6
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.1e-27 127.5 193 43.5
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.1e-27 127.5 192 44.3
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 1.4e-27 127.1 193 42.5
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.4e-27 127.1 191 41.4
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 1.9e-27 126.7 189 44.4
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.9e-27 126.7 189 43.4
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.4e-27 126.3 192 43.8
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 2.4e-27 126.3 186 45.2
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 4.1e-27 125.6 188 40.4
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 5.4e-27 125.2 188 42.0
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.4e-27 125.2 193 43.0
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 7.0e-27 124.8 191 42.4
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 7.0e-27 124.8 186 41.9
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 9.2e-27 124.4 193 44.0
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.6e-26 123.6 186 40.3
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.0e-26 123.2 199 42.7
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 2.0e-26 123.2 186 44.6
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 2.7e-26 122.9 200 39.5
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 3.5e-26 122.5 195 44.1
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 4.6e-26 122.1 196 44.4
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 6.0e-26 121.7 190 41.1
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.0e-25 120.9 188 43.1
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 1.0e-25 120.9 184 40.8
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 1.7e-25 120.2 195 41.0
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 3.0e-25 119.4 186 40.9
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 3.0e-25 119.4 188 41.5
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 3.0e-25 119.4 192 43.2
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 5.0e-25 118.6 189 41.8
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 8.6e-25 117.9 188 43.1
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 1.1e-24 117.5 196 37.2
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 1.5e-24 117.1 184 40.2
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 1.9e-24 116.7 186 38.7
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 2.5e-24 116.3 199 41.2
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 3.3e-24 115.9 195 40.5
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 3.3e-24 115.9 184 38.6
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 3.3e-24 115.9 195 41.0
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 3.3e-24 115.9 186 40.9
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 4.3e-24 115.5 184 39.1
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 4.3e-24 115.5 184 41.3
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 5.6e-24 115.2 186 39.2
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 7.3e-24 114.8 199 40.2
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 7.3e-24 114.8 191 42.9
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 1.2e-23 114.0 184 38.0
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 1.2e-23 114.0 184 38.0
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 1.2e-23 114.0 184 38.0
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 1.6e-23 113.6 189 42.3
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.1e-23 113.2 188 39.9
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 2.1e-23 113.2 184 39.1
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 4.7e-23 112.1 190 40.0
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 6.2e-23 111.7 192 41.1
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 1.1e-22 110.9 186 40.9
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.8e-22 110.2 186 38.7
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 4.0e-22 109.0 184 37.5
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 4.0e-22 109.0 188 39.4
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 5.2e-22 108.6 185 38.4
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 5.2e-22 108.6 184 38.6
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 5.2e-22 108.6 193 39.4
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 5.2e-22 108.6 103 59.2
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.5e-21 107.1 185 38.9
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 4.4e-21 105.5 192 38.5
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 4.4e-21 105.5 202 36.6
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 9.8e-21 104.4 189 41.3
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 3.7e-20 102.4 209 35.4
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 4.9e-20 102.1 207 40.1
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 6.4e-20 101.7 187 38.5
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.1e-19 100.9 186 37.1
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 2.7e-18 96.3 190 36.3
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 6.0e-18 95.1 219 34.7
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 1.9e-16 90.1 194 37.1
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 2.5e-16 89.7 167 36.5
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.2e-15 87.4 186 38.2
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 1.6e-15 87.0 186 38.2
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 1.6e-15 87.0 184 37.5
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 4.7e-15 85.5 184 37.5
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.1e-14 84.3 187 37.4
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 1.1e-14 84.3 196 37.2
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 1.8e-14 83.6 192 35.4
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 6.8e-14 81.6 198 36.9
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.3e-12 77.4 151 37.1
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 4.9e-12 75.5 158 38.6
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 8.4e-12 74.7 155 35.5
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 1.5e-08 63.9 213 31.5
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.5e-08 63.9 72 48.6
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 4.7e-07 58.9 204 31.4
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 4.0e-06 55.8 111 36.9


User provided reference genes

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