Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 4.8e-138 494.6 264 100.0
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 9.5e-78 294.3 276 66.3
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.9e-46 190.3 248 48.8
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 3.3e-46 189.5 277 48.0
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.7e-45 185.7 256 47.7
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.5e-43 180.6 236 51.7
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 7.6e-43 178.3 259 45.9
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 9.9e-43 177.9 246 50.0
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.9e-43 177.9 246 49.6
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.3e-42 177.6 241 46.9
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.2e-42 176.8 241 46.9
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 3.8e-42 176.0 260 48.1
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 2.4e-41 173.3 239 46.0
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.2e-41 172.9 240 44.6
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 4.2e-41 172.6 175 50.3
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.6e-40 170.6 254 44.5
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.1e-40 170.2 244 47.1
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.7e-40 169.9 183 52.5
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 1.0e-39 167.9 182 51.1
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.0e-39 167.9 236 47.0
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.7e-39 167.2 173 52.6
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.9e-39 166.0 254 44.9
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.9e-39 166.0 259 47.5
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 5.1e-39 165.6 162 54.3
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 5.1e-39 165.6 178 53.4
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 5.1e-39 165.6 258 45.3
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 6.6e-39 165.2 244 44.3
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 8.7e-39 164.9 244 46.3
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-38 164.5 242 45.5
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.1e-38 164.5 195 47.7
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.5e-38 164.1 244 45.9
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.5e-38 164.1 246 45.9
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.9e-38 163.7 256 42.2
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.9e-38 163.7 243 41.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 4.3e-38 162.5 255 44.7
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.3e-38 162.5 255 44.3
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.3e-38 162.5 180 57.2
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 5.6e-38 162.2 171 52.0
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 5.6e-38 162.2 242 46.3
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 9.6e-38 161.4 266 40.2
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 9.6e-38 161.4 248 42.3
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 9.6e-38 161.4 243 43.2
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-37 161.0 242 45.0
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.6e-37 160.6 172 50.6
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.1e-37 160.2 252 44.4
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.1e-37 160.2 256 44.9
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.1e-37 160.2 256 44.9
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 2.8e-37 159.8 244 43.4
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 2.8e-37 159.8 235 42.1
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 2.8e-37 159.8 248 44.4
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 3.6e-37 159.5 241 44.4
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 3.6e-37 159.5 252 43.3
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 4.8e-37 159.1 262 42.7
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 4.8e-37 159.1 259 44.0
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 6.2e-37 158.7 243 42.4
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 6.2e-37 158.7 250 46.4
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 8.1e-37 158.3 256 44.5
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.1e-36 157.9 233 45.5
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.4e-36 157.5 167 50.9
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.8e-36 157.1 242 41.3
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 2.4e-36 156.8 246 47.2
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.4e-36 156.8 178 51.7
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 3.1e-36 156.4 261 44.1
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 3.1e-36 156.4 269 42.0
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 3.1e-36 156.4 261 44.1
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 3.1e-36 156.4 245 48.2
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 3.1e-36 156.4 241 44.4
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.0e-36 156.0 231 42.9
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 4.0e-36 156.0 200 48.5
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 4.0e-36 156.0 257 38.9
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 6.9e-36 155.2 253 41.9
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 6.9e-36 155.2 254 44.5
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 6.9e-36 155.2 244 43.0
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 6.9e-36 155.2 174 48.3
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 9.0e-36 154.8 238 44.5
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.2e-35 154.5 209 49.3
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.2e-35 154.5 191 49.2
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.5e-35 154.1 250 44.8
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.5e-35 154.1 247 42.9
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.5e-35 154.1 244 45.1
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.5e-35 154.1 256 43.4
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.6e-35 153.3 258 43.4
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.6e-35 153.3 247 44.1
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.6e-35 153.3 246 41.1
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 3.4e-35 152.9 256 43.4
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 3.4e-35 152.9 256 43.0
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 3.4e-35 152.9 253 44.3
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 7.6e-35 151.8 260 42.7
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 9.9e-35 151.4 249 44.2
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 9.9e-35 151.4 199 48.7
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.2e-34 150.2 191 47.6
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 2.9e-34 149.8 163 49.1
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.9e-34 149.1 257 41.6
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 6.4e-34 148.7 251 40.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 8.4e-34 148.3 264 41.7
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.9e-33 147.1 250 42.0
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.9e-33 147.1 243 42.0
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.4e-33 146.7 257 42.0
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.4e-33 146.7 250 42.0
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.2e-33 146.4 173 46.2
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 3.2e-33 146.4 178 46.1
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 4.2e-33 146.0 266 42.1
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.2e-33 146.0 251 43.8
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 7.1e-33 145.2 250 41.2
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.2e-32 144.4 273 41.4
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.6e-32 144.1 261 42.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 3.5e-32 142.9 246 43.1
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 3.5e-32 142.9 252 43.7
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 6.0e-32 142.1 199 47.2
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.0e-31 141.4 273 39.6
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.3e-31 141.0 263 39.9
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.7e-31 140.6 165 49.1
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 3.9e-31 139.4 241 40.2
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.5e-30 137.5 179 49.2
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 4.3e-30 136.0 266 37.2
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.6e-30 135.6 274 38.0
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.8e-29 133.3 95 65.3
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.6e-29 132.9 232 43.1
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 3.6e-29 132.9 232 38.4
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 4.8e-29 132.5 273 40.3
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.1e-25 121.3 303 33.3
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.4e-25 120.9 235 36.2
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.2e-25 119.8 255 34.5
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 3.2e-25 119.8 285 34.7
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.3e-23 114.4 228 35.1
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.9e-23 112.8 156 42.3
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.4e-20 104.4 358 29.9
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 8.4e-18 95.1 200 34.5
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.1e-17 94.7 139 43.2
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 5.5e-17 92.4 136 44.1
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 7.1e-17 92.0 140 40.0
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 2.1e-16 90.5 213 34.3
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.3e-15 87.8 235 32.8
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.3e-15 87.8 60 63.3
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 1.3e-15 87.8 91 49.5
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.1e-14 84.7 253 34.4
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.5e-14 84.3 70 61.4
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.8e-13 80.1 131 39.7
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-10 71.2 139 37.4
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.5e-09 67.0 252 31.3
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 4.2e-09 66.2 46 60.9
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 4.2e-09 66.2 46 60.9
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 6.1e-08 62.4 111 45.0
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.3e-07 61.2 57 56.1
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 4.3e-06 56.2 119 42.9
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 9.7e-06 55.1 120 40.0


User provided reference genes

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