Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 8.8e-37 156.4 75 100.0
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 3.1e-34 147.9 64 98.4
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 1.4e-31 139.0 64 92.2
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 6.3e-27 123.6 61 88.5
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 1.0e-24 116.3 63 77.8
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 1.3e-24 115.9 63 74.6
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 2.2e-24 115.2 61 82.0
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 2.2e-24 115.2 61 82.0
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 2.2e-24 115.2 61 82.0
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 2.2e-24 115.2 61 82.0
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 3.8e-24 114.4 64 75.0
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 3.8e-24 114.4 62 75.8
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 5.0e-24 114.0 63 76.2
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 6.5e-24 113.6 64 70.3
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 6.5e-24 113.6 63 74.6
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 6.5e-24 113.6 65 73.8
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 8.5e-24 113.2 65 75.4
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.9e-23 112.1 63 73.0
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.2e-23 111.3 74 60.8
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 3.2e-23 111.3 63 73.0
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 3.2e-23 111.3 62 77.4
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 3.2e-23 111.3 62 75.8
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 4.2e-23 110.9 62 74.2
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 4.2e-23 110.9 63 73.0
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 4.2e-23 110.9 63 73.0
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 5.5e-23 110.5 61 73.8
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 7.2e-23 110.2 63 68.3
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 7.2e-23 110.2 63 71.4
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 7.2e-23 110.2 61 77.0
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 9.4e-23 109.8 63 73.0
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 1.2e-22 109.4 63 69.8
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 1.6e-22 109.0 64 67.2
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.6e-22 109.0 63 71.4
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 2.1e-22 108.6 61 75.4
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 2.1e-22 108.6 61 73.8
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 2.1e-22 108.6 63 74.6
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 2.1e-22 108.6 62 71.0
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 2.7e-22 108.2 64 70.3
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 2.7e-22 108.2 62 72.6
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 3.6e-22 107.8 62 71.0
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 3.6e-22 107.8 64 70.3
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 3.6e-22 107.8 62 69.4
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 6.1e-22 107.1 64 65.6
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 6.1e-22 107.1 65 69.2
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 8.0e-22 106.7 63 69.8
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 8.0e-22 106.7 63 69.8
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 8.0e-22 106.7 65 64.6
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.4e-21 105.9 62 69.4
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.4e-21 105.9 62 67.7
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.8e-21 105.5 60 75.0
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 3.0e-21 104.8 64 73.4
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 3.0e-21 104.8 64 65.6
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 3.0e-21 104.8 63 69.8
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 3.9e-21 104.4 60 70.0
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 3.9e-21 104.4 62 67.7
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 3.9e-21 104.4 60 75.0
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 3.9e-21 104.4 64 65.6
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 3.9e-21 104.4 64 65.6
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 5.2e-21 104.0 63 68.3
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 5.2e-21 104.0 60 70.0
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 5.2e-21 104.0 60 73.3
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 6.7e-21 103.6 60 71.7
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 6.7e-21 103.6 73 65.8
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 8.8e-21 103.2 63 66.7
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 8.8e-21 103.2 60 73.3
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 1.1e-20 102.8 60 68.3
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 1.1e-20 102.8 60 68.3
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 1.1e-20 102.8 60 68.3
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 1.1e-20 102.8 61 73.8
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 1.5e-20 102.4 62 69.4
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 1.5e-20 102.4 62 69.4
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 1.5e-20 102.4 60 68.3
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 1.5e-20 102.4 62 69.4
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 1.5e-20 102.4 62 69.4
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 1.5e-20 102.4 62 69.4
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 1.5e-20 102.4 62 69.4
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 1.5e-20 102.4 63 63.5
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 3.3e-20 101.3 56 71.4
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 4.4e-20 100.9 62 67.7
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 4.4e-20 100.9 56 71.4
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 4.4e-20 100.9 56 71.4
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 4.4e-20 100.9 56 71.4
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 1.3e-19 99.4 60 70.0
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.3e-19 99.4 64 67.2
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.3e-19 99.4 64 67.2
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 1.7e-19 99.0 62 67.7
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.7e-19 99.0 60 70.0
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 2.8e-19 98.2 62 64.5
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 2.8e-19 98.2 59 67.8
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 4.8e-19 97.4 65 64.6
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 4.8e-19 97.4 62 67.7
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 1.4e-18 95.9 59 62.7
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 1.4e-18 95.9 59 64.4
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 1.6e-17 92.4 45 75.6
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 1.0e-16 89.7 62 62.9
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 5.0e-16 87.4 62 56.5
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 6.5e-16 87.0 62 58.1
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 1.5e-15 85.9 49 73.5
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.9e-15 85.5 61 57.4
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 9.4e-15 83.2 52 71.2
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 2.7e-14 81.6 50 70.0
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 3.6e-14 81.3 50 72.0
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 6.1e-14 80.5 50 68.0
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 6.1e-14 80.5 50 70.0
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 2.3e-13 78.6 49 65.3
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 3.0e-13 78.2 58 53.4
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 3.0e-13 78.2 49 67.3
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 5.2e-13 77.4 51 60.8
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 6.8e-13 77.0 56 57.1
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 2.0e-12 75.5 44 68.2
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 2.2e-11 72.0 52 63.5
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 6.3e-11 70.5 56 50.0
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 1.3e-08 62.8 35 71.4
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 1.7e-08 62.4 52 61.5
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 1.9e-07 58.9 36 72.2
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 2.5e-07 58.5 37 73.0
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 2.5e-07 58.5 40 57.5
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 3.2e-07 58.2 36 72.2
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 5.5e-07 57.4 28 75.0
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 1.2e-06 56.2 51 52.9
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.7e-06 55.1 35 65.7
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.7e-06 55.1 35 65.7
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 3.6e-06 54.7 36 63.9
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 4.7e-06 54.3 35 65.7


User provided reference genes

Program Settings