Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb355600 Zea mays HOM05D009723 ORTHO05D037178 1.1e-172 609.8 298 100.0
Os05g0345700 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D037178 2.3e-80 303.1 284 57.4
Os05g0115500 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D037178 7.4e-79 298.1 272 57.7
Zm00001eb271330 Zea mays HOM05D009723 ORTHO05D014671 1.3e-27 127.9 292 35.6
Zm00001eb376010 Zea mays HOM05D009723 ORTHO05D014671 2.3e-27 127.1 295 34.9
Zm00001eb375960 Zea mays HOM05D009723 ORTHO05D014671 1.1e-26 124.8 296 35.1
Zm00001eb271340 Zea mays HOM05D009723 ORTHO05D014671 2.8e-25 120.2 285 34.0
Zm00001eb271380 Zea mays HOM05D009723 ORTHO05D014671 4.0e-24 116.3 285 33.7
Zm00001eb271360 Zea mays HOM05D009723 ORTHO05D014671 6.8e-24 115.5 277 34.7
Zm00001eb375550 Zea mays HOM05D009723 ORTHO05D014671 2.4e-21 107.1 289 31.8
Os08g0164300 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D300131 3.2e-21 106.7 297 33.0
Os06g0161800 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D014671 4.6e-20 102.8 288 33.0
Zm00001eb055580 Zea mays HOM05D009723 ORTHO05D445506 1.0e-19 101.7 296 33.8
Zm00001eb373770 Zea mays HOM05D009723 ORTHO05D014671 1.0e-19 101.7 297 30.6
Zm00001eb172310 Zea mays HOM05D009723 ORTHO05D014671 2.3e-19 100.5 295 32.9
Zm00001eb172340 Zea mays HOM05D009723 ORTHO05D014671 4.3e-18 96.3 308 33.1
Os06g0162100 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D014671 1.2e-15 88.2 294 30.6
Os06g0161900 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D014671 3.9e-11 73.2 297 29.0
Lsat_1_v5_gn_3_102280 Lactuca sativa HOM05D001102 ORTHO05D001018 5.1e-11 72.8 288 26.7
Rhsim10G0031300 Rhododendron simsii HOM05D001102 ORTHO05D001018 8.6e-11 72.0 297 27.9
PSO591G0295 Papaver somniferum HOM05D001102 ORTHO05D001018 3.3e-10 70.1 291 24.7
Rhsim10G0032200 Rhododendron simsii HOM05D001102 ORTHO05D001018 4.3e-10 69.7 306 26.8
PSO832G0214 Papaver somniferum HOM05D001102 ORTHO05D001018 1.6e-09 67.8 291 24.4
Zm00001eb292240 Zea mays HOM05D001102 ORTHO05D443936 1.6e-09 67.8 316 26.6
vmacro01223 Vaccinium macrocarpon HOM05D001102 ORTHO05D001018 8.1e-09 65.5 296 23.6
VMungo0251G0436 Vigna mungo HOM05D001102 ORTHO05D001018 8.1e-09 65.5 192 29.7
Phvul.003G071100 Phaseolus vulgaris HOM05D001102 ORTHO05D001018 1.8e-08 64.3 149 32.9
C02p27050 Brassica napus HOM05D001102 ORTHO05D001018 2.3e-08 63.9 283 26.1
BcaB05g24498 Brassica carinata HOM05D001102 ORTHO05D001018 3.1e-08 63.5 284 27.1
A02p16210 Brassica napus HOM05D001102 ORTHO05D001018 5.2e-08 62.8 282 27.0
BraA02t06681Z Brassica rapa HOM05D001102 ORTHO05D001018 5.2e-08 62.8 282 27.0
ECA246G2373 Erigeron canadensis HOM05D001102 ORTHO05D001018 5.2e-08 62.8 158 31.6
TAR629G1103 Trochodendron aralioides HOM05D001102 ORTHO05D001018 5.2e-08 62.8 166 29.5
BolC8t49892H Brassica oleracea HOM05D001102 ORTHO05D001018 6.8e-08 62.4 174 27.0
Lsat_1_v5_gn_3_49941 Lactuca sativa HOM05D001102 ORTHO05D001018 6.8e-08 62.4 158 31.6
Lsat_1_v5_gn_4_180001 Lactuca sativa HOM05D001102 ORTHO05D001018 6.8e-08 62.4 293 25.9
Thecc.04G073200 Theobroma cacao HOM05D001102 ORTHO05D001018 6.8e-08 62.4 313 24.0
vmacro01222 Vaccinium macrocarpon HOM05D001102 ORTHO05D001018 6.8e-08 62.4 295 25.1
BcaC03g15139 Brassica carinata HOM05D001102 ORTHO05D001018 8.9e-08 62.0 284 27.1
BcaC07g39252 Brassica carinata HOM05D001102 ORTHO05D001018 8.9e-08 62.0 174 27.0
BolC2t08766H Brassica oleracea HOM05D001102 ORTHO05D001018 8.9e-08 62.0 284 27.1
MELO3C012051.2 Cucumis melo HOM05D001102 ORTHO05D001018 8.9e-08 62.0 307 24.8
FAN22G2405 Fragaria x ananassa HOM05D001102 ORTHO05D001018 8.9e-08 62.0 307 24.1
CAN.G1128.6 Capsicum annuum HOM05D001102 ORTHO05D001018 1.2e-07 61.6 289 25.3
Oeu011703.1 Olea europaea HOM05D001102 ORTHO05D001018 1.5e-07 61.2 308 23.4
Rhsim12G0055000 Rhododendron simsii HOM05D001102 ORTHO05D001018 1.5e-07 61.2 153 29.4
CARHR024800 Cardamine hirsuta HOM05D001102 ORTHO05D001018 2.0e-07 60.8 181 29.3
Aa31LG2G4550 Aethionema arabicum HOM05D001102 ORTHO05D001018 2.6e-07 60.5 162 30.2
Eucgr.B02585 Eucalyptus grandis HOM05D001102 ORTHO05D001018 2.6e-07 60.5 177 27.7
HanXRQChr17g0544461 Helianthus annuus HOM05D001102 ORTHO05D001018 2.6e-07 60.5 157 32.5
COL.COLO4_25210 Corchorus olitorius HOM05D001102 ORTHO05D001018 3.4e-07 60.1 158 31.6
TWI32G1211 Tripterygium wilfordii HOM05D001102 ORTHO05D001018 3.4e-07 60.1 171 31.6
Os08g0164000 Oryza sativa ssp. japonica HOM05D009723 ORTHO05D298143 4.4e-07 59.7 172 25.0
MELO3C009895.2 Cucumis melo HOM05D001102 ORTHO05D001018 5.8e-07 59.3 156 30.8
CsaV3_5G032170 Cucumis sativus L. HOM05D001102 ORTHO05D001018 5.8e-07 59.3 303 23.8
Lj3A1043T83 Lonicera japonica HOM05D001102 ORTHO05D001018 5.8e-07 59.3 183 27.3
CANSAT01G1031 Cannabis sativa HOM05D001102 ORTHO05D001018 7.6e-07 58.9 158 29.1
HanXRQChr09g0265641 Helianthus annuus HOM05D001102 ORTHO05D001018 7.6e-07 58.9 293 24.9
PGSC0003DMG400001307 Solanum tuberosum HOM05D001102 ORTHO05D001018 7.6e-07 58.9 161 29.2
ClCG05G024730 Citrullus lanatus HOM05D001102 ORTHO05D001018 9.9e-07 58.5 298 25.2
Dinv24943 Davidia involucrata HOM05D001102 ORTHO05D001018 9.9e-07 58.5 173 28.3
Lj4g0012702 Lotus japonicus HOM05D001102 ORTHO05D001018 9.9e-07 58.5 294 23.8
Nn4g23005 Nelumbo nucifera HOM05D001102 ORTHO05D001018 9.9e-07 58.5 164 30.5
Oeu018670.1 Olea europaea HOM05D001102 ORTHO05D001018 9.9e-07 58.5 282 24.8
Solyc02g087580.3 Solanum lycopersicum HOM05D001102 ORTHO05D001018 9.9e-07 58.5 153 29.4
Sopen02g032340 Solanum pennellii HOM05D001102 ORTHO05D001018 1.3e-06 58.2 153 29.4
TWI75G0040 Tripterygium wilfordii HOM05D001102 ORTHO05D001018 1.3e-06 58.2 311 23.8
A07p36330 Brassica napus HOM05D001102 ORTHO05D001018 1.7e-06 57.8 162 29.0
BraA07t31205Z Brassica rapa HOM05D001102 ORTHO05D001018 1.7e-06 57.8 162 29.0
Rhsim12G0054600 Rhododendron simsii HOM05D001102 ORTHO05D001018 1.7e-06 57.8 153 28.1
BcaC08g46438 Brassica carinata HOM05D001102 ORTHO05D001018 2.2e-06 57.4 162 29.0
C06p43750 Brassica napus HOM05D001102 ORTHO05D001018 2.2e-06 57.4 162 29.0
BolC6t39447H Brassica oleracea HOM05D001102 ORTHO05D001018 2.2e-06 57.4 162 29.0
ECA247G0142 Erigeron canadensis HOM05D001102 ORTHO05D001018 2.2e-06 57.4 295 24.7
Migut.E00122 Erythranthe guttata HOM05D001102 ORTHO05D001018 2.2e-06 57.4 283 24.4
Hma1.2p1_1361F.1_g278120 Hydrangea macrophylla HOM05D001102 ORTHO05D001018 2.2e-06 57.4 286 27.3
PGR102G2543 Punica granatum HOM05D001102 ORTHO05D001018 2.2e-06 57.4 158 31.0
Zm00001eb442410 Zea mays HOM05D009723 ORTHO05D441393 2.2e-06 57.4 90 33.3
BcaB03g14767 Brassica carinata HOM05D001102 ORTHO05D001018 2.9e-06 57.0 155 28.4
CiPaw.03G030900 Carya illinoinensis HOM05D001102 ORTHO05D001018 2.9e-06 57.0 159 28.3
Nitab4.5_0000564g0390 Nicotiana tabacum HOM05D001102 ORTHO05D010262 3.8e-06 56.6 156 28.8
SalBow8G4242 Salvia bowleyana HOM05D001102 ORTHO05D001018 3.8e-06 56.6 294 22.4
SGA_v2.0_scaffold224G42957 Striga asiatica HOM05D001102 ORTHO05D001018 3.8e-06 56.6 158 29.1
Haze_14592 Corylus avellana HOM05D001102 ORTHO05D001018 4.9e-06 56.2 301 24.3
Prupe.3G273000 Prunus persica HOM05D001102 ORTHO05D001018 4.9e-06 56.2 160 26.9
RcHm_v2.0_Chr2g0169291 Rosa chinensis HOM05D001102 ORTHO05D001018 4.9e-06 56.2 163 27.6
GSVIVG01032593001 Vitis vinifera HOM05D001102 ORTHO05D001018 4.9e-06 56.2 153 28.8
Actinidia08206 Actinidia chinensis HOM05D001102 ORTHO05D001018 6.4e-06 55.8 159 26.4
PSO161G0023 Papaver somniferum HOM05D001102 ORTHO05D001018 6.4e-06 55.8 163 27.6
PSO478G4471 Papaver somniferum HOM05D001102 ORTHO05D001018 6.4e-06 55.8 163 27.6
Cpa.g.sc14.52 Carica papaya HOM05D001102 ORTHO05D001018 8.4e-06 55.5 162 28.4
ClCG10G014790 Citrullus lanatus HOM05D001102 ORTHO05D001018 8.4e-06 55.5 148 31.1
Os03g0801900 Oryza sativa ssp. japonica HOM05D001102 ORTHO05D001018 8.4e-06 55.5 153 28.8
QL03p066370 Quercus lobata HOM05D001102 ORTHO05D001018 8.4e-06 55.5 284 23.2


User provided reference genes

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