Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 3.3e-74 281.6 138 100.0
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.5e-55 219.5 121 90.1
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.9e-45 186.0 112 81.2
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 2.1e-36 156.0 136 60.3
Zm00001eb053120 Zea mays HOM05D063178 ORTHO05D005898 3.6e-28 128.6 80 80.0
Zm00001eb154760 Zea mays HOM05D063178 ORTHO05D005898 4.6e-23 111.7 56 96.4
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 4.7e-20 101.7 65 72.3
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 8.0e-20 100.9 65 67.7
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 1.0e-19 100.5 125 47.2
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.8e-19 99.8 93 54.8
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 3.1e-19 99.0 104 51.9
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.1e-19 99.0 89 53.9
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.1e-19 99.0 89 53.9
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 5.2e-19 98.2 89 56.2
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 5.2e-19 98.2 89 56.2
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 6.8e-19 97.8 113 47.8
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 8.9e-19 97.4 144 42.4
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 8.9e-19 97.4 98 49.0
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.2e-18 97.1 89 56.2
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.2e-18 97.1 89 56.2
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.2e-18 97.1 89 55.1
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.5e-18 96.7 66 69.7
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 2.0e-18 96.3 89 55.1
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 2.6e-18 95.9 105 51.4
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 2.6e-18 95.9 89 53.9
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 2.6e-18 95.9 64 70.3
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 2.6e-18 95.9 134 41.0
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 4.4e-18 95.1 89 52.8
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 5.8e-18 94.7 89 52.8
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 5.8e-18 94.7 89 52.8
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 5.8e-18 94.7 96 50.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 7.5e-18 94.4 94 47.9
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 7.5e-18 94.4 89 51.7
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 7.5e-18 94.4 89 51.7
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 9.8e-18 94.0 128 43.0
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 9.8e-18 94.0 115 47.0
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.3e-17 93.6 123 44.7
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.3e-17 93.6 99 51.5
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.3e-17 93.6 89 50.6
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 2.2e-17 92.8 93 49.5
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.2e-17 92.8 128 42.2
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.2e-17 92.8 99 49.5
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.2e-17 92.8 141 39.0
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 2.9e-17 92.4 89 50.6
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 2.9e-17 92.4 89 50.6
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 2.9e-17 92.4 73 57.5
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 3.7e-17 92.0 128 42.2
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 3.7e-17 92.0 65 66.2
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.7e-17 92.0 128 45.3
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 4.9e-17 91.7 90 51.1
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 4.9e-17 91.7 142 40.1
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.4e-17 91.3 89 50.6
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 6.4e-17 91.3 139 38.8
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 6.4e-17 91.3 89 49.4
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 6.4e-17 91.3 144 40.3
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 6.4e-17 91.3 92 54.3
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 8.3e-17 90.9 89 49.4
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 8.3e-17 90.9 89 50.6
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.1e-16 90.5 71 63.4
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.1e-16 90.5 112 49.1
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.1e-16 90.5 89 50.6
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.4e-16 90.1 89 50.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.4e-16 90.1 89 49.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.4e-16 90.1 109 48.6
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.4e-16 90.1 89 50.6
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.4e-16 90.1 89 50.6
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.4e-16 90.1 90 53.3
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 2.4e-16 89.4 111 44.1
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 2.4e-16 89.4 89 50.6
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.4e-16 89.4 134 38.1
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.2e-16 89.0 78 56.4
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 3.2e-16 89.0 71 63.4
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 3.2e-16 89.0 65 63.1
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 3.2e-16 89.0 89 49.4
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 3.2e-16 89.0 95 47.4
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 4.1e-16 88.6 89 49.4
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 4.1e-16 88.6 85 52.9
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.4e-16 88.2 114 44.7
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 5.4e-16 88.2 89 48.3
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 5.4e-16 88.2 89 48.3
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 5.4e-16 88.2 78 56.4
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.4e-16 88.2 78 56.4
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 5.4e-16 88.2 87 52.9
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 7.0e-16 87.8 70 60.0
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 7.0e-16 87.8 87 50.6
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 9.2e-16 87.4 67 61.2
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.2e-16 87.4 84 50.0
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 9.2e-16 87.4 84 50.0
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.2e-15 87.0 129 38.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 1.2e-15 87.0 118 43.2
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.6e-15 86.7 65 55.4
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.6e-15 86.7 65 58.5
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 2.0e-15 86.3 141 37.6
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.0e-15 86.3 87 50.6
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.5e-15 85.5 71 59.2
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 3.5e-15 85.5 107 42.1
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 6.0e-15 84.7 97 43.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 7.8e-15 84.3 141 34.8
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.0e-14 84.0 97 44.3
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.3e-14 83.6 84 48.8
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.7e-14 83.2 112 44.6
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 2.3e-14 82.8 99 49.5
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.3e-14 82.8 141 34.0
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 3.0e-14 82.4 94 47.9
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.0e-14 81.6 120 40.0
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.0e-14 81.6 120 40.0
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.1e-13 80.5 118 41.5
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.9e-13 79.7 127 40.2
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.3e-13 78.6 106 40.6
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 5.6e-13 78.2 87 51.7
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 5.6e-13 78.2 87 51.7
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 7.3e-13 77.8 87 51.7
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 7.3e-13 77.8 87 51.7
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.2e-12 77.0 65 55.4
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 2.8e-12 75.9 63 55.6
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 6.2e-12 74.7 66 54.5
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 5.2e-11 71.6 98 39.8
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 6.8e-11 71.2 81 42.0
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 6.8e-11 71.2 71 45.1
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 4.4e-10 68.6 67 52.2
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 4.4e-10 68.6 67 52.2
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 5.8e-10 68.2 87 44.8
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 7.5e-10 67.8 138 36.2
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 2.2e-09 66.2 141 35.5
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.9e-08 63.2 86 40.7
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 3.2e-08 62.4 71 46.5


User provided reference genes

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