Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb354990 Zea mays HOM05D003340 ORTHO05D003775 1.3e-53 213.0 120 100.0
Os05g0126800 Oryza sativa ssp. japonica HOM05D003340 ORTHO05D003775 2.5e-25 119.0 106 61.3
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 1.6e-16 89.7 119 42.0
Sabra02G0065600 Salix brachista HOM05D003340 ORTHO05D003775 2.1e-16 89.4 120 40.0
Potri.002G083600 Populus trichocarpa HOM05D003340 ORTHO05D003775 2.7e-16 89.0 120 41.7
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.4e-15 86.7 118 43.2
Duzib093G0952 Durio zibethinus HOM05D003340 ORTHO05D003775 1.4e-15 86.7 119 40.3
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.8e-15 86.3 118 43.2
Manes.18G077306 Manihot esculenta HOM05D003340 ORTHO05D003775 2.3e-15 85.9 119 41.2
Nitab4.5_0001187g0040 Nicotiana tabacum HOM05D003340 ORTHO05D003775 5.2e-15 84.7 117 41.0
Nitab4.5_0001344g0050 Nicotiana tabacum HOM05D003340 ORTHO05D003775 5.2e-15 84.7 117 41.0
CSS0003781 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 6.8e-15 84.3 121 38.8
CSS0046765 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 6.8e-15 84.3 121 38.8
Thecc.08G125400 Theobroma cacao HOM05D003340 ORTHO05D003775 8.8e-15 84.0 120 39.2
COL.COLO4_36312 Corchorus olitorius HOM05D003340 ORTHO05D003775 1.2e-14 83.6 120 39.2
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 1.2e-14 83.6 118 42.4
Duzib041G0745 Durio zibethinus HOM05D003340 ORTHO05D003775 1.5e-14 83.2 119 39.5
Peaxi162Scf00079g00248 Petunia axillaris HOM05D003340 ORTHO05D003775 1.5e-14 83.2 117 41.0
Sopen04g027620 Solanum pennellii HOM05D003340 ORTHO05D003775 1.5e-14 83.2 117 41.0
CAN.G264.5 Capsicum annuum HOM05D003340 ORTHO05D003775 2.0e-14 82.8 117 41.0
Duzib116G0828 Durio zibethinus HOM05D003340 ORTHO05D003775 4.4e-14 81.6 111 41.4
PGSC0003DMG400006659 Solanum tuberosum HOM05D003340 ORTHO05D003775 5.7e-14 81.3 117 40.2
Solyc04g071630.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 7.5e-14 80.9 117 40.2
Gohir.A01G189000 Gossypium hirsutum HOM05D003340 ORTHO05D003775 9.8e-14 80.5 116 39.7
Gohir.A06G044800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 9.8e-14 80.5 120 39.2
Gohir.D01G180500 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.3e-13 80.1 119 39.5
Gorai.002G222100 Gossypium raimondii HOM05D003340 ORTHO05D003775 1.3e-13 80.1 119 39.5
TPR.G25816 Trifolium pratense HOM05D003340 ORTHO05D003775 1.3e-13 80.1 120 40.8
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 1.7e-13 79.7 118 39.0
Gohir.D06G045300 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.7e-13 79.7 120 39.2
Gorai.010G050300 Gossypium raimondii HOM05D003340 ORTHO05D003775 1.7e-13 79.7 120 39.2
PSO170G4666 Papaver somniferum HOM05D003340 ORTHO05D003775 2.2e-13 79.3 123 39.8
VMungo1309G0419 Vigna mungo HOM05D003340 ORTHO05D003775 2.8e-13 79.0 117 39.3
Cpa.g.sc64.87 Carica papaya HOM05D003340 ORTHO05D003775 3.7e-13 78.6 115 39.1
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 3.7e-13 78.6 120 39.2
Gorai.009G283300 Gossypium raimondii HOM05D003340 ORTHO05D003775 3.7e-13 78.6 120 39.2
Glyma.13G079000 Glycine max HOM05D003340 ORTHO05D003775 6.3e-13 77.8 120 40.8
Gohir.D05G270700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 8.3e-13 77.4 120 39.2
PSO528G0096 Papaver somniferum HOM05D003340 ORTHO05D003775 8.3e-13 77.4 126 38.1
Potri.005G178000 Populus trichocarpa HOM05D003340 ORTHO05D003775 8.3e-13 77.4 120 39.2
Rhsim06G0103500 Rhododendron simsii HOM05D003340 ORTHO05D003775 8.3e-13 77.4 116 38.8
Zm00001eb289950 Zea mays HOM05D003340 ORTHO05D003775 8.3e-13 77.4 117 42.7
CANSAT25G3576 Cannabis sativa HOM05D003340 ORTHO05D003775 1.1e-12 77.0 122 35.2
Dinv07220 Davidia involucrata HOM05D003340 ORTHO05D003775 1.1e-12 77.0 121 37.2
QL09p034593 Quercus lobata HOM05D003340 ORTHO05D003775 1.1e-12 77.0 120 35.8
Psat6g041160 Pisum sativum HOM05D003340 ORTHO05D003775 1.8e-12 76.3 116 40.5
Haze_00442 Corylus avellana HOM05D003340 ORTHO05D003775 2.4e-12 75.9 120 36.7
SHI08457 Sapria himalayana HOM05D003340 ORTHO05D003775 2.4e-12 75.9 120 36.7
Nn5g28288 Nelumbo nucifera HOM05D003340 ORTHO05D003775 3.1e-12 75.5 121 36.4
Atru.chr13.1461 Acer truncatum HOM05D003340 ORTHO05D003775 4.1e-12 75.1 119 37.0
CiPaw.05G221600 Carya illinoinensis HOM05D003340 ORTHO05D003775 4.1e-12 75.1 119 36.1
Glyma.14G150300 Glycine max HOM05D003340 ORTHO05D003775 5.4e-12 74.7 120 40.0
TAR381G1109 Trochodendron aralioides HOM05D003340 ORTHO05D003775 5.4e-12 74.7 121 36.4
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 7.0e-12 74.3 117 36.8
Lj7P340T28 Lonicera japonica HOM05D003340 ORTHO05D003775 7.0e-12 74.3 118 38.1
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 7.0e-12 74.3 121 36.4
FAN15G0091 Fragaria x ananassa HOM05D003340 ORTHO05D003775 9.1e-12 73.9 120 36.7
FAN20G1789 Fragaria x ananassa HOM05D003340 ORTHO05D003775 9.1e-12 73.9 120 36.7
MD15G1348300 Malus domestica HOM05D003340 ORTHO05D003775 9.1e-12 73.9 117 36.8
Hund17293 Selenicereus undatus HOM05D003340 ORTHO05D003775 9.1e-12 73.9 122 38.5
Lj1g0019913 Lotus japonicus HOM05D003340 ORTHO05D003775 1.2e-11 73.6 120 36.7
Os01g0833400 Oryza sativa ssp. japonica HOM05D003340 ORTHO05D003775 1.2e-11 73.6 129 38.8
SalBow7G3799 Salvia bowleyana HOM05D003340 ORTHO05D003775 1.2e-11 73.6 121 37.2
VMungo0647G0885 Vigna mungo HOM05D000654 ORTHO05D002330 1.2e-11 73.6 120 38.3
MD08G1162700 Malus domestica HOM05D003340 ORTHO05D003775 1.6e-11 73.2 117 37.6
Medtr1g030060 Medicago truncatula HOM05D003340 ORTHO05D003775 1.6e-11 73.2 120 37.5
PGR044G1945 Punica granatum HOM05D003340 ORTHO05D003775 1.6e-11 73.2 122 34.4
RcHm_v2.0_Chr6g0295821 Rosa chinensis HOM05D003340 ORTHO05D003775 1.6e-11 73.2 119 37.0
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 2.0e-11 72.8 119 36.1
MSTRG.25383 Avicennia marina HOM05D003340 ORTHO05D003775 2.7e-11 72.4 121 35.5
CiPaw.06G030900 Carya illinoinensis HOM05D003340 ORTHO05D003775 2.7e-11 72.4 120 35.8
Glyma.06G113100 Glycine max HOM05D003340 ORTHO05D003775 2.7e-11 72.4 119 36.1
Ca_12617_v3 Cicer arietinum L. HOM05D003340 ORTHO05D003775 3.5e-11 72.0 120 38.3
Lalb_Chr10g0101671 Lupinus albus HOM05D003340 ORTHO05D003775 3.5e-11 72.0 116 39.7
Ciclev10002808m.g Citrus clementina HOM05D003340 ORTHO05D003775 5.9e-11 71.2 120 34.2
HanXRQChr04g0125231 Helianthus annuus HOM05D003340 ORTHO05D003775 5.9e-11 71.2 112 34.8
Lalb_Chr11g0065901 Lupinus albus HOM05D003340 ORTHO05D003775 7.7e-11 70.9 109 38.5
Sed0000027 Sechium edule HOM05D003340 ORTHO05D003775 7.7e-11 70.9 117 38.5
GSVIVG01008867001 Vitis vinifera HOM05D003340 ORTHO05D003775 1.3e-10 70.1 125 36.0
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.7e-10 69.7 117 38.5
ClCG11G015750 Citrullus lanatus HOM05D003340 ORTHO05D003775 1.7e-10 69.7 120 35.8
Lsat_1_v5_gn_1_10021 Lactuca sativa HOM05D003340 ORTHO05D003775 1.7e-10 69.7 117 36.8
Phvul.008G161200 Phaseolus vulgaris HOM05D003340 ORTHO05D003775 1.7e-10 69.7 120 37.5
MELO3C010478.2 Cucumis melo HOM05D003340 ORTHO05D003775 2.3e-10 69.3 121 35.5
CsaV3_4G028260 Cucumis sativus L. HOM05D003340 ORTHO05D003775 2.3e-10 69.3 121 35.5
Medtr3g088030 Medicago truncatula HOM05D003340 ORTHO05D003775 2.9e-10 68.9 120 35.8
SGA_v2.0_scaffold52G18966 Striga asiatica HOM05D003340 ORTHO05D003775 2.9e-10 68.9 121 36.4
TWI32G0782 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 2.9e-10 68.9 125 35.2
Eucgr.F04352 Eucalyptus grandis HOM05D003340 ORTHO05D003775 3.8e-10 68.6 120 32.5
MBI11_g05791_MAGBIO Magnolia biondii HOM05D003340 ORTHO05D003775 5.0e-10 68.2 107 36.4
Aa31LG9G14230 Aethionema arabicum HOM05D003340 ORTHO05D003775 8.6e-10 67.4 115 35.7
Thhalv10029030m.g Eutrema salsugineum HOM05D003340 ORTHO05D003775 8.6e-10 67.4 118 35.6
PGR083G2718 Punica granatum HOM05D003340 ORTHO05D003775 8.6e-10 67.4 106 39.6
Lj1g0013118 Lotus japonicus HOM05D003340 ORTHO05D003775 1.5e-09 66.6 119 35.3
Phvul.009G125000 Phaseolus vulgaris HOM05D003340 ORTHO05D003775 1.5e-09 66.6 117 33.3
PGR102G2107 Punica granatum HOM05D003340 ORTHO05D003775 1.5e-09 66.6 112 39.3
ATR0743G272 Amborella trichopoda HOM05D003340 ORTHO05D003775 1.9e-09 66.2 105 36.2
Nn3g19971 Nelumbo nucifera HOM05D003340 ORTHO05D003775 1.9e-09 66.2 119 34.5
THA.LOC104817332 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 1.9e-09 66.2 116 35.3
Carub.0006s2689 Capsella rubella HOM05D003340 ORTHO05D003775 4.2e-09 65.1 119 35.3
Hma1.2p1_0619F.1_g190390 Hydrangea macrophylla HOM05D003340 ORTHO05D003775 4.2e-09 65.1 117 39.3
Oeu059436.2 Olea europaea HOM05D003340 ORTHO05D003775 4.2e-09 65.1 120 32.5
EL10Ac4g09660 Beta vulgaris HOM05D003340 ORTHO05D003775 5.5e-09 64.7 125 34.4
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 7.2e-09 64.3 123 35.0
THA.LOC104806822 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 7.2e-09 64.3 120 35.8
Thecc.01G205400 Theobroma cacao HOM05D003340 ORTHO05D003775 7.2e-09 64.3 107 36.4
CARHR259420 Cardamine hirsuta HOM05D003340 ORTHO05D003775 9.5e-09 63.9 119 33.6
Atru.chr6.3490 Acer truncatum HOM05D003340 ORTHO05D003775 1.2e-08 63.5 107 36.4
AL6G42100 Arabidopsis lyrata HOM05D003340 ORTHO05D003775 1.2e-08 63.5 118 35.6
AT4G08330 Arabidopsis thaliana HOM05D003340 ORTHO05D003775 1.2e-08 63.5 118 35.6
Cc10_g11880 Coffea canephora HOM05D003340 ORTHO05D003775 1.2e-08 63.5 117 32.5
Psat5g087400 Pisum sativum HOM05D003340 ORTHO05D003775 1.2e-08 63.5 119 35.3
AUR62006909 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.6e-08 63.2 129 34.9
Potri.005G070600 Populus trichocarpa HOM05D003340 ORTHO05D003775 1.6e-08 63.2 124 34.7
HPP92_013888 Vanilla planifolia HOM05D003340 ORTHO05D003775 1.6e-08 63.2 106 39.6
BcaC03g16448 Brassica carinata HOM05D003340 ORTHO05D003775 2.1e-08 62.8 119 37.0
C02p42680 Brassica napus HOM05D003340 ORTHO05D003775 2.1e-08 62.8 119 37.0
BolSC33t60637H Brassica oleracea HOM05D003340 ORTHO05D003775 2.1e-08 62.8 119 37.0
Lj4P627T24 Lonicera japonica HOM05D003340 ORTHO05D003775 2.1e-08 62.8 96 36.5
Manes.13G057400 Manihot esculenta HOM05D003340 ORTHO05D003775 3.6e-08 62.0 107 36.4
A02p26860 Brassica napus HOM05D003340 ORTHO05D003775 4.7e-08 61.6 116 37.1
BraA02t07697Z Brassica rapa HOM05D003340 ORTHO05D003775 4.7e-08 61.6 116 37.1
CANSAT25G3664 Cannabis sativa HOM05D003340 ORTHO05D003775 4.7e-08 61.6 107 33.6
Duzib133G0034 Durio zibethinus HOM05D003340 ORTHO05D003775 6.1e-08 61.2 107 35.5
Potri.014G197000 Populus trichocarpa HOM05D003340 ORTHO05D003775 6.1e-08 61.2 107 33.6
BcaB05g23940 Brassica carinata HOM05D003340 ORTHO05D003775 8.0e-08 60.8 120 34.2
Peaxi162Scf00304g00221 Petunia axillaris HOM05D003340 ORTHO05D003775 8.0e-08 60.8 123 36.6
Sp6g09610 Schrenkiella parvula HOM05D003340 ORTHO05D003775 8.0e-08 60.8 122 32.8
Zm00001eb368310 Zea mays HOM05D003340 ORTHO05D003775 8.0e-08 60.8 80 46.2
Dinv07260 Davidia involucrata HOM05D003340 ORTHO05D003775 1.0e-07 60.5 119 36.1
MD10G1145900 Malus domestica HOM05D003340 ORTHO05D003775 1.0e-07 60.5 110 37.3
Prupe.8G184300 Prunus persica HOM05D003340 ORTHO05D003775 1.4e-07 60.1 107 35.5
TAR636G0511 Trochodendron aralioides HOM05D003340 ORTHO05D003775 1.4e-07 60.1 107 34.6
CSS0032864 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 1.8e-07 59.7 106 36.8
FAN27G0698 Fragaria x ananassa HOM05D003340 ORTHO05D003775 1.8e-07 59.7 107 34.6
Hund21783 Selenicereus undatus HOM05D003340 ORTHO05D003775 1.8e-07 59.7 123 34.1
FAN27G2034 Fragaria x ananassa HOM05D003340 ORTHO05D003775 3.0e-07 58.9 107 34.6
GSVIVG01022376001 Vitis vinifera HOM05D003340 ORTHO05D003775 3.0e-07 58.9 96 37.5
Migut.C01126 Erythranthe guttata HOM05D003340 ORTHO05D003775 4.0e-07 58.5 118 33.1
Migut.N00692 Erythranthe guttata HOM05D003340 ORTHO05D003775 4.0e-07 58.5 107 34.6
Prupe.1G497200 Prunus persica HOM05D003340 ORTHO05D003775 4.0e-07 58.5 71 45.1
Sabra05G0057400 Salix brachista HOM05D003340 ORTHO05D003775 4.0e-07 58.5 124 32.3
SGA_v2.0_scaffold120G33021 Striga asiatica HOM05D003340 ORTHO05D003775 4.0e-07 58.5 107 35.5
TWI74G0103 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 4.0e-07 58.5 117 35.9
MSTRG.14138 Avicennia marina HOM05D003340 ORTHO05D003775 5.2e-07 58.2 130 34.6
Gohir.A11G144700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 5.2e-07 58.2 107 34.6
FvH4_2g17280 Fragaria vesca HOM05D003340 ORTHO05D003775 6.8e-07 57.8 107 33.6
FAN15G0686 Fragaria x ananassa HOM05D003340 ORTHO05D003775 6.8e-07 57.8 107 33.6
FAN24G1923 Fragaria x ananassa HOM05D003340 ORTHO05D003775 6.8e-07 57.8 107 33.6
Solyc06g048850.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 6.8e-07 57.8 104 35.6
SalBow1G3156 Salvia bowleyana HOM05D003340 ORTHO05D003775 8.9e-07 57.4 119 34.5
SalBow1G8517 Salvia bowleyana HOM05D003340 ORTHO05D003775 8.9e-07 57.4 119 34.5
arahy.Tifrunner.gnm1.ann1.IJ94GX Arachis hypogaea HOM05D003340 ORTHO05D003775 1.2e-06 57.0 101 36.6
arahy.Tifrunner.gnm1.ann1.VCNM2G Arachis hypogaea HOM05D003340 ORTHO05D003775 2.0e-06 56.2 101 35.6
HPP92_019003 Vanilla planifolia HOM05D003340 ORTHO05D003775 2.0e-06 56.2 117 33.3
Hma1.2p1_0161F.1_g071770 Hydrangea macrophylla HOM05D003340 ORTHO05D003775 2.6e-06 55.8 107 36.4
RcHm_v2.0_Chr6g0281781 Rosa chinensis HOM05D003340 ORTHO05D003775 2.6e-06 55.8 107 32.7
HPP92_018105 Vanilla planifolia HOM05D003340 ORTHO05D003775 2.6e-06 55.8 117 33.3
arahy.Tifrunner.gnm1.ann1.JPFK87 Arachis hypogaea HOM05D003340 ORTHO05D003775 4.4e-06 55.1 108 33.3
arahy.Tifrunner.gnm1.ann1.X0XLBA Arachis hypogaea HOM05D003340 ORTHO05D003775 4.4e-06 55.1 108 33.3
Gohir.D11G152366 Gossypium hirsutum HOM05D003340 ORTHO05D003775 4.4e-06 55.1 107 34.6
Lj3g0018377 Lotus japonicus HOM05D003340 ORTHO05D003775 5.7e-06 54.7 107 33.6
Lalb_Chr07g0184161 Lupinus albus HOM05D003340 ORTHO05D003775 7.5e-06 54.3 129 31.0
Sabra14G0133400 Salix brachista HOM05D003340 ORTHO05D003775 7.5e-06 54.3 78 35.9
Sopen06g015140 Solanum pennellii HOM05D003340 ORTHO05D003775 9.8e-06 53.9 87 37.9
THA.LOC104808821 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 9.8e-06 53.9 110 31.8


User provided reference genes

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