Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb353630 Zea mays HOM05D010444 ORTHO05D010602 8.8e-131 470.3 242 100.0
Zm00001eb323950 Zea mays HOM05D010444 ORTHO05D010602 1.1e-75 287.3 247 70.0
Os06g0343500 Oryza sativa ssp. japonica HOM05D010444 ORTHO05D010602 1.3e-36 157.5 194 52.1
Zm00001eb117540 Zea mays HOM05D010444 ORTHO05D010602 9.7e-29 131.3 232 42.2
Os01g0735450 Oryza sativa ssp. japonica HOM05D010444 ORTHO05D010602 1.3e-28 131.0 181 48.6
Os07g0503200 Oryza sativa ssp. japonica HOM05D010444 ORTHO05D010602 2.0e-18 97.1 212 40.6
MBI15_g27554_MAGBIO Magnolia biondii HOM05D010444 ORTHO05D010602 1.0e-17 94.7 163 41.7
SGA_v2.0_scaffold181G39744 Striga asiatica HOM05D010444 ORTHO05D010602 5.0e-17 92.4 173 42.2
AT4G34139 Arabidopsis thaliana HOM05D014563 ORTHO05D010602 1.5e-16 90.9 105 49.5
Zm00001eb280960 Zea mays HOM05D010444 ORTHO05D051413 1.9e-16 90.5 228 38.2
Os04g0523650 Oryza sativa ssp. japonica HOM05D031261 ORTHO05D010602 4.7e-15 85.9 213 39.9
Os09g0518266 Oryza sativa ssp. japonica HOM05D011891 ORTHO05D014146 6.1e-15 85.5 171 40.4
MBI17_g19033_MAGBIO Magnolia biondii HOM05D014563 ORTHO05D010602 3.4e-13 79.7 150 40.7
SGA_v2.0_scaffold32G13151 Striga asiatica HOM05D000068 ORTHO05D008806 8.3e-12 75.1 192 35.9
FAN14G5886 Fragaria x ananassa HOM05D010444 ORTHO05D010602 1.1e-11 74.7 103 47.6
Zm00001eb279500 Zea mays HOM05D031261 ORTHO05D010602 1.6e-10 70.9 183 36.6
Os02g0578201 Oryza sativa ssp. japonica HOM05D011587 ORTHO05D010602 2.0e-10 70.5 157 41.4
Os04g0523812 Oryza sativa ssp. japonica HOM05D031261 ORTHO05D010602 4.5e-10 69.3 204 35.8
SGA_v2.0_scaffold73G24417 Striga asiatica HOM05D010444 ORTHO05D010602 1.0e-09 68.2 122 44.3
SGA_v2.0_scaffold96G28940 Striga asiatica HOM05D015573 ORTHO05D017203 1.0e-09 68.2 172 36.0
Manes.01G120601 Manihot esculenta HOM05D014563 ORTHO05D010602 2.3e-09 67.0 120 41.7
CiPaw.15G057400 Carya illinoinensis HOM05D014563 ORTHO05D010602 2.9e-09 66.6 101 42.6
SGA_v2.0_scaffold90G27610 Striga asiatica HOM05D010444 ORTHO05D010602 2.9e-09 66.6 124 40.3
MBI15_g22231_MAGBIO Magnolia biondii HOM05D014563 ORTHO05D010602 1.1e-08 64.7 89 43.8
SGA_v2.0_scaffold127G34043 Striga asiatica HOM05D011891 ORTHO05D014146 1.9e-08 63.9 66 54.5
CiPaw.09G003700 Carya illinoinensis HOM05D014563 ORTHO05D010602 2.5e-08 63.5 164 37.2
SGA_v2.0_scaffold12G06190 Striga asiatica HOM05D011891 ORTHO05D014146 2.5e-08 63.5 144 38.2
MBI05_g34728_MAGBIO Magnolia biondii HOM05D011587 ORTHO05D010602 5.6e-08 62.4 156 35.9
CiPaw.04G101700 Carya illinoinensis HOM05D011587 ORTHO05D010602 7.3e-08 62.0 144 37.5
CiPaw.05G034500 Carya illinoinensis HOM05D011587 ORTHO05D010602 7.3e-08 62.0 100 46.0
SGA_v2.0_scaffold66G22474 Striga asiatica HOM05D011891 ORTHO05D010602 9.5e-08 61.6 80 46.2
MBI14_g08068_MAGBIO Magnolia biondii HOM05D010444 ORTHO05D010602 1.2e-07 61.2 100 44.0
HanXRQChr03g0091821 Helianthus annuus HOM05D010444 ORTHO05D010602 1.6e-07 60.8 63 52.4
Manes.12G036450 Manihot esculenta HOM05D014563 ORTHO05D010602 1.4e-06 57.8 98 40.8
SGA_v2.0_scaffold393G50704 Striga asiatica HOM05D010444 ORTHO05D010602 1.8e-06 57.4 103 38.8
SGA_v2.0_scaffold89G27548 Striga asiatica HOM05D010444 ORTHO05D010602 8.9e-06 55.1 140 35.7


User provided reference genes

Program Settings