Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb352480 Zea mays HOM05D004025 ORTHO05D021029 5.0e-118 428.3 317 100.0
Zm00001eb326430 Zea mays HOM05D004025 ORTHO05D021029 5.5e-72 275.4 242 100.0
Zm00001eb361560 Zea mays HOM05D004025 ORTHO05D021029 5.5e-72 275.4 242 100.0
Zm00001eb377950 Zea mays HOM05D004025 ORTHO05D021029 5.5e-72 275.4 242 100.0
Zm00001eb027210 Zea mays HOM05D004025 ORTHO05D021029 4.1e-59 232.6 237 94.5
Zm00001eb168670 Zea mays HOM05D004025 ORTHO05D004929 3.2e-56 223.0 234 93.6
Os11g0209700 Oryza sativa ssp. japonica HOM05D004025 ORTHO05D004929 5.2e-38 162.5 156 75.6
Zm00001eb114410 Zea mays HOM05D004025 ORTHO05D021029 5.3e-35 152.5 79 94.9
FAN28G0438 Fragaria x ananassa HOM05D004025 ORTHO05D004929 6.6e-17 92.4 78 61.5
CANSAT01G1331 Cannabis sativa HOM05D004025 ORTHO05D004929 1.5e-16 91.3 77 58.4
FvH4_1g24240 Fragaria vesca HOM05D004025 ORTHO05D004929 1.5e-16 91.3 78 60.3
FAN19G0688 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.5e-16 91.3 78 60.3
FAN23G0558 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.5e-16 91.3 78 60.3
FAN23G0951 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.5e-16 91.3 78 60.3
RcHm_v2.0_Chr2g0120731 Rosa chinensis HOM05D004025 ORTHO05D004929 3.3e-16 90.1 76 59.2
FAN26G1692 Fragaria x ananassa HOM05D004025 ORTHO05D004929 4.3e-16 89.7 78 60.3
Ca_16939_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 2.1e-15 87.4 75 56.0
Ca_16958_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 2.1e-15 87.4 75 56.0
Glyma.05G191200 Glycine max HOM05D004025 ORTHO05D004929 2.1e-15 87.4 77 57.1
Nitab4.5_0005674g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 2.8e-15 87.0 81 56.8
PSO675G2111 Papaver somniferum HOM05D004025 ORTHO05D004929 2.8e-15 87.0 82 57.3
Nitab4.5_0002667g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 4.7e-15 86.3 72 59.7
AT5G64070 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 6.1e-15 85.9 72 56.9
SEGI_16906 Sequoiadendron giganteum HOM05D004025 ORTHO05D004929 6.1e-15 85.9 82 57.3
Lj1g0010712 Lotus japonicus HOM05D004025 ORTHO05D004929 8.0e-15 85.5 75 54.7
Nn1g06239 Nelumbo nucifera HOM05D004025 ORTHO05D004929 8.0e-15 85.5 82 54.9
TWI31G0593 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 8.0e-15 85.5 73 61.6
Dinv24344 Davidia involucrata HOM05D004025 ORTHO05D004929 1.0e-14 85.1 80 55.0
TWI75G0726 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 1.0e-14 85.1 73 60.3
PSO541G3336 Papaver somniferum HOM05D004025 ORTHO05D004929 1.4e-14 84.7 82 56.1
GSVIVG01026496001 Vitis vinifera HOM05D004025 ORTHO05D004929 1.4e-14 84.7 77 58.4
Carub.0008s2485 Capsella rubella HOM05D004025 ORTHO05D004929 1.8e-14 84.3 83 53.0
Migut.L00888 Erythranthe guttata HOM05D004025 ORTHO05D004929 1.8e-14 84.3 76 56.6
CAN.G652.7 Capsicum annuum HOM05D004025 ORTHO05D004929 2.3e-14 84.0 73 60.3
Sopen11g001850 Solanum pennellii HOM05D004025 ORTHO05D004929 2.3e-14 84.0 73 61.6
Aa31LG1G17850 Aethionema arabicum HOM05D004025 ORTHO05D004929 3.0e-14 83.6 77 55.8
Lalb_Chr08g0238391 Lupinus albus HOM05D004025 ORTHO05D004929 3.0e-14 83.6 76 52.6
Peaxi162Scf00589g00320 Petunia axillaris HOM05D004025 ORTHO05D004929 3.0e-14 83.6 77 57.1
Cpa.g.sc42.143 Carica papaya HOM05D004025 ORTHO05D004929 4.0e-14 83.2 78 55.1
Phvul.002G271500 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 4.0e-14 83.2 77 54.5
Cc07_g18300 Coffea canephora HOM05D004025 ORTHO05D004929 5.2e-14 82.8 65 63.1
Glyma.06G152800 Glycine max HOM05D004025 ORTHO05D004929 5.2e-14 82.8 79 54.4
Rhsim10G0135700 Rhododendron simsii HOM05D004025 ORTHO05D004929 5.2e-14 82.8 82 53.7
Solyc11g005910.2 Solanum lycopersicum HOM05D004025 ORTHO05D004929 5.2e-14 82.8 73 60.3
AL6G19740 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 6.8e-14 82.4 82 56.1
Glyma.04G213400 Glycine max HOM05D004025 ORTHO05D004929 6.8e-14 82.4 77 55.8
ATR0721G093 Amborella trichopoda HOM05D004025 ORTHO05D004929 8.9e-14 82.0 81 56.8
arahy.Tifrunner.gnm1.ann1.GI519K Arachis hypogaea HOM05D004025 ORTHO05D004929 8.9e-14 82.0 76 56.6
arahy.Tifrunner.gnm1.ann1.T69UQ6 Arachis hypogaea HOM05D004025 ORTHO05D004929 8.9e-14 82.0 76 56.6
Gorai.008G094100 Gossypium raimondii HOM05D004025 ORTHO05D004929 8.9e-14 82.0 71 59.2
Lj4C845G3 Lonicera japonica HOM05D004025 ORTHO05D004929 8.9e-14 82.0 79 53.2
MD17G1256600 Malus domestica HOM05D004025 ORTHO05D004929 8.9e-14 82.0 73 58.9
Medtr8g093570 Medicago truncatula HOM05D004025 ORTHO05D004929 8.9e-14 82.0 77 53.2
Nn5g28584 Nelumbo nucifera HOM05D004025 ORTHO05D004929 1.2e-13 81.6 82 52.4
HPP92_019399 Vanilla planifolia HOM05D004025 ORTHO05D004929 1.2e-13 81.6 71 57.7
PGR079G0002 Punica granatum HOM05D004025 ORTHO05D004929 1.5e-13 81.3 78 57.7
PGR119G0653 Punica granatum HOM05D004025 ORTHO05D004929 1.5e-13 81.3 78 57.7
PGSC0003DMG401028661 Solanum tuberosum HOM05D004025 ORTHO05D004929 1.5e-13 81.3 71 60.6
TAR625G0443 Trochodendron aralioides HOM05D004025 ORTHO05D004929 1.5e-13 81.3 78 53.8
Gohir.D12G084000 Gossypium hirsutum HOM05D004025 ORTHO05D004929 2.0e-13 80.9 72 58.3
Thecc.01G130400 Theobroma cacao HOM05D004025 ORTHO05D004929 2.6e-13 80.5 71 59.2
CiPaw.03G122700 Carya illinoinensis HOM05D004025 ORTHO05D004929 4.4e-13 79.7 77 54.5
Gohir.A12G090600 Gossypium hirsutum HOM05D004025 ORTHO05D004929 4.4e-13 79.7 71 57.7
Oeu047692.2 Olea europaea HOM05D004025 ORTHO05D004929 4.4e-13 79.7 67 59.7
Phvul.009G149800 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 4.4e-13 79.7 75 56.0
THA.LOC104800034 Tarenaya hassleriana HOM05D004025 ORTHO05D004929 4.4e-13 79.7 71 53.5
TPR.G34649 Trifolium pratense HOM05D004025 ORTHO05D004929 4.4e-13 79.7 74 51.4
CsaV3_6G041660 Cucumis sativus L. HOM05D004025 ORTHO05D004929 5.7e-13 79.3 125 60.8
Hma1.2p1_0476F.1_g160915 Hydrangea macrophylla HOM05D004025 ORTHO05D004929 5.7e-13 79.3 68 58.8
Manes.12G154400 Manihot esculenta HOM05D004025 ORTHO05D004929 5.7e-13 79.3 73 57.5
Aqoxy6G00339 Aquilegia oxysepala HOM05D004025 ORTHO05D004929 7.5e-13 79.0 82 52.4
arahy.Tifrunner.gnm1.ann1.P4XMCK Arachis hypogaea HOM05D004025 ORTHO05D004929 7.5e-13 79.0 77 54.5
MELO3C008054.2 Cucumis melo HOM05D004025 ORTHO05D004929 9.8e-13 78.6 123 60.2
Sabra07G0089100 Salix brachista HOM05D004025 ORTHO05D004929 9.8e-13 78.6 99 43.4
SGA_v2.0_scaffold132G34527 Striga asiatica HOM05D004025 ORTHO05D004929 9.8e-13 78.6 59 66.1
TPR.G37364 Trifolium pratense HOM05D004025 ORTHO05D004929 9.8e-13 78.6 77 51.9
Lalb_Chr12g0203161 Lupinus albus HOM05D004025 ORTHO05D004929 1.3e-12 78.2 70 58.6
Potri.007G109000 Populus trichocarpa HOM05D004025 ORTHO05D004929 1.3e-12 78.2 77 51.9
VMungo1309G0837 Vigna mungo HOM05D004025 ORTHO05D004929 1.3e-12 78.2 77 55.8
AT5G09350 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 1.7e-12 77.8 80 55.0
ClCG01G015430 Citrullus lanatus HOM05D004025 ORTHO05D004929 2.2e-12 77.4 123 59.3
TAR381G0182 Trochodendron aralioides HOM05D004025 ORTHO05D004929 2.2e-12 77.4 73 54.8
AUR62006840 Chenopodium quinoa HOM05D004025 ORTHO05D004929 2.9e-12 77.0 75 52.0
SalBow1G5432 Salvia bowleyana HOM05D004025 ORTHO05D004929 2.9e-12 77.0 76 48.7
CARHR204050 Cardamine hirsuta HOM05D004025 ORTHO05D004929 3.7e-12 76.6 80 53.8
CDE06G1971 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 3.7e-12 76.6 70 62.9
COL.COLO4_35712 Corchorus olitorius HOM05D004025 ORTHO05D004929 3.7e-12 76.6 71 54.9
vmacro12812 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 3.7e-12 76.6 72 55.6
Sed0015970 Sechium edule HOM05D004025 ORTHO05D004929 6.4e-12 75.9 71 54.9
MSTRG.2662 Avicennia marina HOM05D004025 ORTHO05D004929 1.8e-11 74.3 75 53.3
Ca_17642_v3 Cicer arietinum L. HOM05D002604 ORTHO05D004929 1.8e-11 74.3 65 58.5
unitig_52.g17244 Utricularia gibba HOM05D004025 ORTHO05D004929 2.4e-11 73.9 74 47.3
Sc09g0002360 Simmondsia chinensis HOM05D004025 ORTHO05D004929 4.1e-11 73.2 70 55.7
Carub.0006s0789 Capsella rubella HOM05D004025 ORTHO05D004929 2.0e-10 70.9 78 51.3
Hund21821 Selenicereus undatus HOM05D004025 ORTHO05D004929 3.5e-10 70.1 79 48.1
VMungo1127G1876 Vigna mungo HOM05D001773 ORTHO05D001710 1.0e-09 68.6 61 57.4
ECA232G2812 Erigeron canadensis HOM05D004025 ORTHO05D004929 2.5e-08 63.9 77 49.4
SHI11475 Sapria himalayana HOM05D004025 ORTHO05D004929 5.6e-08 62.8 68 47.1
Psat7g045720 Pisum sativum HOM05D004025 ORTHO05D004929 1.6e-07 61.2 77 42.9
MBI06_g29665_MAGBIO Magnolia biondii HOM05D004025 ORTHO05D004929 2.1e-07 60.8 57 57.9
Ah.06g190860 Amaranthus hybridus HOM05D004025 ORTHO05D004929 3.6e-07 60.1 59 52.5
Psat0s2140g0080 Pisum sativum HOM05D004025 ORTHO05D004929 4.7e-07 59.7 54 55.6
BcaC01g02663 Brassica carinata HOM05D004025 ORTHO05D004929 8.0e-07 58.9 41 68.3
A06p30780 Brassica napus HOM05D004025 ORTHO05D004929 8.0e-07 58.9 41 68.3
C03p62200 Brassica napus HOM05D004025 ORTHO05D004929 8.0e-07 58.9 41 68.3
BolC3t18483H Brassica oleracea HOM05D004025 ORTHO05D004929 8.0e-07 58.9 41 68.3
BraA06t26020Z Brassica rapa HOM05D004025 ORTHO05D004929 8.0e-07 58.9 41 68.3
DCAR_014341 Daucus carota HOM05D004025 ORTHO05D004929 1.1e-06 58.5 63 54.0
BcaB02g09789 Brassica carinata HOM05D004025 ORTHO05D004929 1.8e-06 57.8 41 68.3
BcaC01g02666 Brassica carinata HOM05D004025 ORTHO05D004929 1.8e-06 57.8 41 68.3
BcaB07g29718 Brassica carinata HOM05D004025 ORTHO05D004929 3.1e-06 57.0 41 65.9
AL8G41330 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 5.2e-06 56.2 43 60.5
Glyma.08G156400 Glycine max HOM05D004025 ORTHO05D004929 5.2e-06 56.2 77 42.9


User provided reference genes

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