Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb352010 Zea mays HOM05D000225 ORTHO05D011080 1.9e-40 168.7 82 100.0
Zm00001eb176280 Zea mays HOM05D000225 ORTHO05D011080 6.6e-38 160.2 81 93.8
Zm00001eb200020 Zea mays HOM05D000225 ORTHO05D011080 4.3e-37 157.5 81 93.8
Zm00001eb108870 Zea mays HOM05D000225 ORTHO05D011080 5.6e-37 157.1 80 93.8
Zm00001eb400740 Zea mays HOM05D000225 ORTHO05D011080 9.6e-37 156.4 81 91.4
Zm00001eb345360 Zea mays HOM05D000225 ORTHO05D011080 2.8e-36 154.8 81 91.4
Zm00001eb419280 Zea mays HOM05D000225 ORTHO05D011080 1.4e-35 152.5 81 90.1
Zm00001eb250700 Zea mays HOM05D000225 ORTHO05D003554 4.0e-35 151.0 79 89.9
Zm00001eb364310 Zea mays HOM05D003418 ORTHO05D011080 4.0e-35 151.0 81 91.4
Zm00001eb292870 Zea mays HOM05D000225 ORTHO05D011080 6.9e-35 150.2 81 90.1
Zm00001eb218790 Zea mays HOM05D000225 ORTHO05D011080 3.4e-34 147.9 81 87.7
Zm00001eb278750 Zea mays HOM05D000225 ORTHO05D011080 3.4e-34 147.9 81 86.4
Zm00001eb407110 Zea mays HOM05D000225 ORTHO05D011080 1.1e-32 142.9 81 87.7
Zm00001eb018060 Zea mays HOM05D000225 ORTHO05D011080 4.2e-32 141.0 75 90.7
Zm00001eb364330 Zea mays HOM05D000225 ORTHO05D011080 5.4e-32 140.6 80 82.5
Os02g0681632 Oryza sativa ssp. japonica HOM05D000225 ORTHO05D011080 9.3e-32 139.8 80 85.0
Zm00001eb173550 Zea mays HOM05D000225 ORTHO05D011080 7.8e-31 136.7 81 84.0
Zm00001eb341660 Zea mays HOM05D000225 ORTHO05D011080 8.7e-30 133.3 72 91.7
Zm00001eb076060 Zea mays HOM05D000225 ORTHO05D011080 1.5e-29 132.5 72 91.7
Zm00001eb283700 Zea mays HOM05D000225 ORTHO05D011080 1.5e-29 132.5 72 91.7
Zm00001eb420690 Zea mays HOM05D000394 ORTHO05D011080 9.6e-29 129.8 68 92.6
Zm00001eb303320 Zea mays HOM05D000225 ORTHO05D011080 3.6e-28 127.9 75 84.0
Zm00001eb050000 Zea mays HOM05D000225 ORTHO05D011080 8.4e-25 116.7 72 81.9
Zm00001eb249460 Zea mays HOM05D000225 ORTHO05D011080 2.5e-21 105.1 77 71.4
Zm00001eb259770 Zea mays HOM05D000225 ORTHO05D011080 1.4e-19 99.4 87 62.1
Zm00001eb368730 Zea mays HOM05D000225 ORTHO05D011080 6.0e-15 84.0 41 95.1
Eucgr.H03181 Eucalyptus grandis HOM05D000225 ORTHO05D003554 3.0e-14 81.6 81 51.9
MD13G1203700 Malus domestica HOM05D000225 ORTHO05D003554 1.9e-13 79.0 78 56.4
Sabra10G0064600 Salix brachista HOM05D000225 ORTHO05D003554 3.3e-13 78.2 77 51.9
Prupe.1G027000 Prunus persica HOM05D000225 ORTHO05D003554 4.3e-13 77.8 85 50.6
Atru.chr4.2285 Acer truncatum HOM05D000225 ORTHO05D003554 2.1e-12 75.5 79 50.6
Potri.010G078700 Populus trichocarpa HOM05D000225 ORTHO05D003554 2.1e-12 75.5 77 50.6
Potri.008G160501 Populus trichocarpa HOM05D000225 ORTHO05D003554 2.8e-12 75.1 77 50.6
Thecc.04G243700 Theobroma cacao HOM05D000225 ORTHO05D003554 2.8e-12 75.1 78 51.3
Sabra08G0122400 Salix brachista HOM05D000225 ORTHO05D003554 3.7e-12 74.7 77 49.4
Potri.008G160600 Populus trichocarpa HOM05D000225 ORTHO05D003554 8.2e-12 73.6 77 49.4
Solyc09g083200.4 Solanum lycopersicum HOM05D000225 ORTHO05D003554 1.4e-11 72.8 75 48.0
CiPaw.01G192400 Carya illinoinensis HOM05D000225 ORTHO05D003554 1.8e-11 72.4 73 52.1
Ciclev10004551m.g Citrus clementina HOM05D000225 ORTHO05D003554 1.8e-11 72.4 77 48.1
PGSC0003DMG400006087 Solanum tuberosum HOM05D000225 ORTHO05D003554 2.4e-11 72.0 75 46.7
Ciclev10006699m.g Citrus clementina HOM05D000225 ORTHO05D011080 5.3e-11 70.9 79 48.1
Lalb_Chr03g0037921 Lupinus albus HOM05D000225 ORTHO05D003554 5.3e-11 70.9 71 50.7
Peaxi162Scf01416g00014 Petunia axillaris HOM05D000225 ORTHO05D003554 5.3e-11 70.9 72 48.6
FAN17G2834 Fragaria x ananassa HOM05D000225 ORTHO05D003554 6.9e-11 70.5 76 50.0
Nn3g19499 Nelumbo nucifera HOM05D000225 ORTHO05D003554 6.9e-11 70.5 77 48.1
Nitab4.5_0000525g0050 Nicotiana tabacum HOM05D000225 ORTHO05D011080 6.9e-11 70.5 73 47.9
Solyc09g083210.3 Solanum lycopersicum HOM05D000225 ORTHO05D003554 6.9e-11 70.5 75 46.7
TAR362G1029 Trochodendron aralioides HOM05D000225 ORTHO05D003554 6.9e-11 70.5 79 48.1
CAN.G626.4 Capsicum annuum HOM05D000225 ORTHO05D003554 9.0e-11 70.1 75 45.3
FAN12G1174 Fragaria x ananassa HOM05D000225 ORTHO05D003554 9.0e-11 70.1 82 48.8
HPP92_014519 Vanilla planifolia HOM05D001408 ORTHO05D003554 1.2e-10 69.7 72 51.4
MSTRG.9933 Avicennia marina HOM05D000225 ORTHO05D003554 1.5e-10 69.3 77 45.5
FvH4_4g02221 Fragaria vesca HOM05D000225 ORTHO05D003554 1.5e-10 69.3 82 47.6
RcHm_v2.0_Chr4g0389541 Rosa chinensis HOM05D000225 ORTHO05D003554 1.5e-10 69.3 77 49.4
Nitab4.5_0000525g0010 Nicotiana tabacum HOM05D000225 ORTHO05D003554 2.0e-10 68.9 73 46.6
QL06p015040 Quercus lobata HOM05D000225 ORTHO05D003554 2.0e-10 68.9 79 48.1
Rhsim02G0032400 Rhododendron simsii HOM05D000225 ORTHO05D003554 2.0e-10 68.9 80 47.5
SHI00572 Sapria himalayana HOM05D000225 ORTHO05D003554 2.0e-10 68.9 80 46.2
Nitab4.5_0004203g0010 Nicotiana tabacum HOM05D000225 ORTHO05D003554 2.6e-10 68.6 73 47.9
Lj6A653G77 Lonicera japonica HOM05D000225 ORTHO05D003554 3.4e-10 68.2 74 51.4
PGR004G2440 Punica granatum HOM05D000225 ORTHO05D003554 3.4e-10 68.2 77 50.6
Duzib151G1111 Durio zibethinus HOM05D000225 ORTHO05D003554 4.5e-10 67.8 75 52.0
Manes.15G035700 Manihot esculenta HOM05D000225 ORTHO05D003554 4.5e-10 67.8 74 47.3
PGSC0003DMG400006086 Solanum tuberosum HOM05D000225 ORTHO05D003554 4.5e-10 67.8 75 45.3
FAN22G1499 Fragaria x ananassa HOM05D000225 ORTHO05D003554 5.8e-10 67.4 76 48.7
vmacro15400 Vaccinium macrocarpon HOM05D000225 ORTHO05D003554 5.8e-10 67.4 74 47.3
Lj6g0021940 Lotus japonicus HOM05D000225 ORTHO05D003554 7.6e-10 67.0 73 49.3
arahy.Tifrunner.gnm1.ann1.35XI12 Arachis hypogaea HOM05D000225 ORTHO05D003554 1.0e-09 66.6 74 48.6
Gohir.D10G147500 Gossypium hirsutum HOM05D000225 ORTHO05D003554 1.0e-09 66.6 76 47.4
Phvul.007G280200 Phaseolus vulgaris HOM05D000225 ORTHO05D003554 1.0e-09 66.6 74 52.7
arahy.Tifrunner.gnm1.ann1.2WY12S Arachis hypogaea HOM05D000225 ORTHO05D003554 1.3e-09 66.2 74 48.6
Ca_26325_v3 Cicer arietinum L. HOM05D000225 ORTHO05D003554 1.3e-09 66.2 73 46.6
Sc19g0003890 Simmondsia chinensis HOM05D000225 ORTHO05D003554 1.3e-09 66.2 81 43.2
VMungo0720G0757 Vigna mungo HOM05D000225 ORTHO05D003554 1.3e-09 66.2 78 50.0
CANSAT78G0865 Cannabis sativa HOM05D000225 ORTHO05D003554 3.8e-09 64.7 79 44.3
COL.COLO4_15766 Corchorus olitorius HOM05D000225 ORTHO05D003554 3.8e-09 64.7 78 44.9
Gohir.D09G224100 Gossypium hirsutum HOM05D000225 ORTHO05D003554 5.0e-09 64.3 76 46.1
Gorai.006G245600 Gossypium raimondii HOM05D000225 ORTHO05D003554 5.0e-09 64.3 76 46.1
Nn1g02546 Nelumbo nucifera HOM05D000225 ORTHO05D011080 5.0e-09 64.3 80 43.8
Sed0011890 Sechium edule HOM05D000225 ORTHO05D003554 5.0e-09 64.3 84 44.0
Cc00_g20680 Coffea canephora HOM05D000225 ORTHO05D003554 8.4e-09 63.5 71 49.3
MELO3C006481.2 Cucumis melo HOM05D000225 ORTHO05D003554 1.1e-08 63.2 84 45.2
Gorai.011G164600 Gossypium raimondii HOM05D000225 ORTHO05D003554 1.1e-08 63.2 76 46.1
MSTRG.4088 Avicennia marina HOM05D000225 ORTHO05D003554 1.4e-08 62.8 71 46.5
Aqoxy2G03515 Aquilegia oxysepala HOM05D000225 ORTHO05D003554 1.9e-08 62.4 70 50.0
Haze_11269 Corylus avellana HOM05D000225 ORTHO05D003554 1.9e-08 62.4 74 47.3
CsaV3_3G012700 Cucumis sativus L. HOM05D000225 ORTHO05D003554 1.9e-08 62.4 84 44.0
SGA_v2.0_scaffold101G29773 Striga asiatica HOM05D000225 ORTHO05D003554 1.9e-08 62.4 82 47.6
GSVIVG01018093001 Vitis vinifera HOM05D000225 ORTHO05D003554 2.5e-08 62.0 73 46.6
Ah.08g213660 Amaranthus hybridus HOM05D000225 ORTHO05D003554 3.2e-08 61.6 81 45.7
Nn1g02547 Nelumbo nucifera HOM05D000225 ORTHO05D003554 3.2e-08 61.6 79 40.5
Hund05492 Selenicereus undatus HOM05D000225 ORTHO05D003554 4.2e-08 61.2 81 45.7
SalBow2G2098 Salvia bowleyana HOM05D000225 ORTHO05D003554 5.5e-08 60.8 76 46.1
Sc19g0003880 Simmondsia chinensis HOM05D000225 ORTHO05D003554 5.5e-08 60.8 81 42.0
Cfa008400 Carpinus fangiana HOM05D000225 ORTHO05D003554 7.1e-08 60.5 74 47.3
TWI09G0570 Tripterygium wilfordii HOM05D000225 ORTHO05D003554 7.1e-08 60.5 77 48.1
EL10Ac7g17698 Beta vulgaris HOM05D000225 ORTHO05D003554 1.2e-07 59.7 75 45.3
AUR62008808 Chenopodium quinoa HOM05D000225 ORTHO05D003554 1.2e-07 59.7 79 40.5
Os03g0233300 Oryza sativa ssp. japonica HOM05D000225 ORTHO05D003554 1.2e-07 59.7 78 46.2
Zm00001eb349400 Zea mays HOM05D000225 ORTHO05D011080 1.2e-07 59.7 29 93.1
AUR62008809 Chenopodium quinoa HOM05D000225 ORTHO05D003554 1.6e-07 59.3 71 43.7
DCAR_002357 Daucus carota HOM05D000225 ORTHO05D003554 1.6e-07 59.3 74 40.5
Hma1.2p1_2099F.1_g313990 Hydrangea macrophylla HOM05D000225 ORTHO05D003554 1.6e-07 59.3 82 45.1
SEGI_06251 Sequoiadendron giganteum HOM05D000225 ORTHO05D003554 2.1e-07 58.9 73 43.8
Zm00001eb273190 Zea mays HOM05D000225 ORTHO05D011080 2.1e-07 58.9 30 90.0
HanXRQChr03g0092501 Helianthus annuus HOM05D000225 ORTHO05D003554 2.7e-07 58.5 76 42.1
PSO238G0035 Papaver somniferum HOM05D000225 ORTHO05D003554 2.7e-07 58.5 82 42.7
ATR0661G139 Amborella trichopoda HOM05D000225 ORTHO05D003554 6.1e-07 57.4 73 39.7
AUR62025429 Chenopodium quinoa HOM05D000225 ORTHO05D003554 6.1e-07 57.4 71 42.3
Psat6g102960 Pisum sativum HOM05D000225 ORTHO05D003554 7.9e-07 57.0 61 45.9
PSO210G5248 Papaver somniferum HOM05D000225 ORTHO05D003554 1.0e-06 56.6 82 42.7
HanXRQChr13g0424591 Helianthus annuus HOM05D000225 ORTHO05D003554 1.8e-06 55.8 78 39.7
GSVIVG01019039001 Vitis vinifera HOM05D000225 ORTHO05D003554 1.8e-06 55.8 77 41.6
Zm00001eb399560 Zea mays HOM05D000225 ORTHO05D003554 1.8e-06 55.8 64 46.9
Glyma.02G000400 Glycine max HOM05D000225 ORTHO05D003554 2.3e-06 55.5 80 41.2
Lsat_1_v5_gn_3_124400 Lactuca sativa HOM05D000225 ORTHO05D003554 2.3e-06 55.5 78 39.7
Zm00001eb009380 Zea mays HOM05D000225 ORTHO05D003554 3.9e-06 54.7 60 48.3
Manes.13G134800 Manihot esculenta HOM05D000225 ORTHO05D003554 6.7e-06 53.9 81 42.0


User provided reference genes

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