Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 8.3e-124 447.2 250 100.0
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.2e-92 342.8 259 79.2
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 3.3e-80 302.4 243 64.6
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 4.9e-76 288.5 248 60.5
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.3e-68 263.8 254 52.8
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 2.2e-68 263.1 245 54.7
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 2.4e-67 259.6 254 53.1
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 4.2e-67 258.8 252 54.4
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.6e-66 256.9 253 54.2
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 8.7e-65 251.1 241 56.4
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.1e-64 250.8 262 51.5
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.3e-64 249.2 241 54.4
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 7.4e-64 248.1 240 57.1
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 9.6e-64 247.7 239 55.6
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.6e-63 246.9 237 55.7
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.8e-62 243.4 241 52.7
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 3.1e-62 242.7 236 53.4
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 3.1e-62 242.7 239 54.0
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 4.0e-62 242.3 236 54.2
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.0e-62 242.3 237 55.3
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 6.9e-62 241.5 239 54.0
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 6.9e-62 241.5 249 51.8
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 6.9e-62 241.5 241 53.9
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 9.0e-62 241.1 237 54.0
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.2e-61 240.7 245 53.5
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.2e-61 240.7 256 50.4
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.6e-61 239.6 236 56.4
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 2.6e-61 239.6 245 52.7
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 3.4e-61 239.2 235 57.0
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.8e-61 238.4 245 52.7
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 5.8e-61 238.4 236 55.9
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 7.6e-61 238.0 237 55.3
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.0e-60 237.7 246 53.7
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.0e-60 237.7 248 53.2
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.3e-60 237.3 239 53.1
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.3e-60 237.3 235 52.8
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.3e-60 237.3 239 54.4
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.3e-60 237.3 247 55.1
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.2e-60 236.5 245 51.0
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 2.2e-60 236.5 239 50.6
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.2e-60 236.5 247 50.6
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 2.9e-60 236.1 237 53.6
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.9e-60 236.1 237 53.6
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.9e-60 236.1 241 53.9
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.9e-60 236.1 250 52.4
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.8e-60 235.7 236 53.8
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 3.8e-60 235.7 246 52.8
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 4.9e-60 235.3 236 59.7
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 6.5e-60 235.0 239 51.9
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 6.5e-60 235.0 250 51.6
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 8.4e-60 234.6 239 59.4
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 8.4e-60 234.6 236 53.0
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.1e-59 234.2 249 52.2
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.1e-59 234.2 240 54.2
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.4e-59 233.8 249 50.6
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.9e-59 233.4 242 51.7
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.5e-59 233.0 236 58.9
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 2.5e-59 233.0 245 51.4
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.5e-59 233.0 252 51.2
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 3.2e-59 232.6 236 52.5
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 5.5e-59 231.9 236 52.5
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.5e-59 231.9 252 51.2
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 5.5e-59 231.9 239 54.0
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 7.1e-59 231.5 239 52.3
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 7.1e-59 231.5 239 53.1
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 7.1e-59 231.5 250 50.8
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 9.3e-59 231.1 248 51.2
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 9.3e-59 231.1 246 53.3
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.2e-58 230.7 239 51.9
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.6e-58 230.3 236 50.8
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.1e-58 229.9 239 53.1
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.1e-58 229.9 240 53.3
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 3.5e-58 229.2 236 54.7
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 4.6e-58 228.8 239 53.6
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 4.6e-58 228.8 239 52.3
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 4.6e-58 228.8 236 53.4
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 6.0e-58 228.4 240 54.2
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 7.9e-58 228.0 249 53.8
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.0e-57 227.6 243 50.6
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.0e-57 227.6 245 51.4
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.3e-57 227.3 239 54.8
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-57 226.9 236 53.4
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.8e-57 226.9 236 53.4
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.3e-57 226.5 236 53.8
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.3e-57 226.5 236 53.8
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 3.0e-57 226.1 248 50.8
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 3.0e-57 226.1 245 55.9
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.9e-57 225.7 249 52.2
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 3.9e-57 225.7 251 51.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.9e-57 225.7 241 51.9
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.1e-57 225.3 238 50.8
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 6.7e-57 224.9 241 51.9
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 6.7e-57 224.9 235 53.6
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.1e-56 224.2 150 69.3
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 1.5e-56 223.8 249 51.8
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-56 223.8 249 51.8
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-56 223.8 249 51.8
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.5e-56 223.8 222 54.5
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.5e-56 223.8 235 52.8
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 4.3e-56 222.2 239 51.0
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 5.7e-56 221.9 238 50.0
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 5.7e-56 221.9 245 59.6
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 7.4e-56 221.5 239 51.5
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 7.4e-56 221.5 249 48.6
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-55 220.3 238 49.6
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.6e-55 220.3 245 60.0
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.6e-55 220.3 245 49.4
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.1e-55 219.9 147 68.7
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 2.8e-55 219.5 235 51.5
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.8e-55 218.8 147 69.4
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.1e-54 217.6 241 50.6
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-54 217.2 239 50.2
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.8e-54 216.9 247 47.0
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 2.4e-54 216.5 254 48.4
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 3.1e-54 216.1 147 67.3
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 4.1e-54 215.7 245 50.2
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.9e-54 214.9 236 50.4
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 6.9e-54 214.9 250 49.6
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 6.9e-54 214.9 239 50.6
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 2.0e-53 213.4 234 48.7
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.6e-53 213.0 240 55.8
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 4.5e-53 212.2 255 52.9
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 7.6e-53 211.5 245 56.7
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.0e-52 211.1 239 50.2
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 1.7e-52 210.3 243 46.9
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.7e-52 210.3 241 50.6
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.8e-52 209.1 248 57.3
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.9e-51 206.8 143 67.8
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 5.5e-51 205.3 292 41.4
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.6e-50 202.6 129 72.1
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 4.6e-50 202.2 259 45.2
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 6.1e-50 201.8 282 44.0
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 6.7e-49 198.4 130 70.8
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 2.2e-47 193.4 126 70.6
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 2.4e-46 189.9 130 69.2
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 5.3e-46 188.7 128 68.8
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.7e-44 183.7 219 48.9
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-43 181.0 266 41.7
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.2e-43 179.1 128 64.1
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.1e-42 176.8 121 66.9
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 7.9e-42 174.9 128 65.6
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.8e-41 173.7 150 53.3
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.0e-41 172.9 127 61.4
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 7.4e-40 168.3 146 55.5
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 3.7e-39 166.0 127 64.6
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.8e-39 165.6 134 59.7
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.8e-30 137.1 133 53.4
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 7.7e-29 131.7 82 74.4
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 2.2e-28 130.2 85 71.8
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.5e-27 125.6 254 38.2
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.9e-19 100.5 123 39.8
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.5e-19 100.1 156 36.5
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.5e-19 100.1 71 69.0
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 9.4e-19 98.2 117 46.2
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 9.4e-19 98.2 157 33.1
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-16 90.5 80 55.0
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.2e-15 87.0 125 36.0
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 1.7e-12 77.4 117 34.2
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.1e-11 74.7 102 44.1
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 9.5e-11 71.6 124 31.5
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.4e-08 62.8 131 42.0
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 1.3e-07 61.2 82 41.5
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 5.4e-06 55.8 74 40.5


User provided reference genes

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