Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb351710 Zea mays HOM05D003053 ORTHO05D051558 1.4e-54 216.1 112 100.0
Os05g0466800 Oryza sativa ssp. japonica HOM05D003053 ORTHO05D003431 6.7e-25 117.5 130 58.5
Zm00001eb148930 Zea mays HOM05D003053 ORTHO05D003431 1.2e-16 90.1 127 52.8
Os01g0833100 Oryza sativa ssp. japonica HOM05D003053 ORTHO05D003431 3.3e-16 88.6 125 51.2
Zm00001eb368330 Zea mays HOM05D003053 ORTHO05D003431 3.3e-16 88.6 127 50.4
Peaxi162Scf00825g00310 Petunia axillaris HOM05D003053 ORTHO05D003431 1.1e-11 73.6 115 45.2
GSVIVG01011158001 Vitis vinifera HOM05D003053 ORTHO05D003431 3.2e-11 72.0 131 43.5
Nitab4.5_0000666g0050 Nicotiana tabacum HOM05D003053 ORTHO05D003431 1.6e-10 69.7 142 38.7
Nitab4.5_0001032g0010 Nicotiana tabacum HOM05D003053 ORTHO05D003431 1.6e-10 69.7 142 38.7
TWI73G0476 Tripterygium wilfordii HOM05D003053 ORTHO05D003431 1.6e-10 69.7 92 48.9
Lj1C956G3 Lonicera japonica HOM05D003053 ORTHO05D003431 2.7e-10 68.9 112 45.5
CSS0039791 Camellia sinensis var. sinensis HOM05D003053 ORTHO05D003431 6.1e-10 67.8 121 45.5
Sabra10G0145200 Salix brachista HOM05D003053 ORTHO05D003431 1.0e-09 67.0 97 45.4
MSTRG.204 Avicennia marina HOM05D003053 ORTHO05D003431 1.8e-09 66.2 113 40.7
Potri.008G068800 Populus trichocarpa HOM05D003053 ORTHO05D003431 1.8e-09 66.2 97 44.3
Sabra08G0050500 Salix brachista HOM05D003053 ORTHO05D003431 1.8e-09 66.2 97 44.3
TWI09G0042 Tripterygium wilfordii HOM05D003053 ORTHO05D003431 1.8e-09 66.2 92 47.8
Cc02_g06480 Coffea canephora HOM05D003053 ORTHO05D003431 2.3e-09 65.9 112 46.4
Potri.010G188500 Populus trichocarpa HOM05D003053 ORTHO05D003431 3.0e-09 65.5 96 44.8
Rhsim04G0128300 Rhododendron simsii HOM05D003053 ORTHO05D003431 3.0e-09 65.5 133 41.4
CANSAT35G1677 Cannabis sativa HOM05D003053 ORTHO05D003431 5.2e-09 64.7 118 44.1
Nn2g13135 Nelumbo nucifera HOM05D003053 ORTHO05D003431 5.2e-09 64.7 108 43.5
HPP92_025093 Vanilla planifolia HOM05D003053 ORTHO05D003431 5.2e-09 64.7 123 41.5
Actinidia00952 Actinidia chinensis HOM05D003053 ORTHO05D003431 6.8e-09 64.3 110 42.7
CDE10G0448 Ceratophyllum demersum HOM05D003053 ORTHO05D003431 6.8e-09 64.3 95 47.4
unitig_0.g239 Utricularia gibba HOM05D003053 ORTHO05D003431 6.8e-09 64.3 115 41.7
FvH4_7g24520 Fragaria vesca HOM05D003053 ORTHO05D003431 8.8e-09 63.9 102 41.2
HPP92_006761 Vanilla planifolia HOM05D003053 ORTHO05D003431 8.8e-09 63.9 94 48.9
GSVIVG01032815001 Vitis vinifera HOM05D003053 ORTHO05D003431 1.5e-08 63.2 109 43.1
FAN06G3299 Fragaria x ananassa HOM05D003053 ORTHO05D003431 2.0e-08 62.8 102 41.2
SalBow6G6375 Salvia bowleyana HOM05D003053 ORTHO05D003431 2.0e-08 62.8 141 37.6
FAN01G2696 Fragaria x ananassa HOM05D003053 ORTHO05D003431 3.4e-08 62.0 105 40.0
FAN03G3333 Fragaria x ananassa HOM05D003053 ORTHO05D003431 3.4e-08 62.0 105 40.0
Zm00001eb098200 Zea mays HOM05D018597 ORTHO05D446545 3.4e-08 62.0 71 57.7
FAN10G2867 Fragaria x ananassa HOM05D003053 ORTHO05D003431 4.4e-08 61.6 96 44.8
Manes.07G129900 Manihot esculenta HOM05D003053 ORTHO05D003431 4.4e-08 61.6 96 44.8
Solyc06g051520.3 Solanum lycopersicum HOM05D003053 ORTHO05D003431 4.4e-08 61.6 124 41.9
PGR031G3963 Punica granatum HOM05D003053 ORTHO05D003431 5.7e-08 61.2 118 40.7
TAR636G2849 Trochodendron aralioides HOM05D003053 ORTHO05D003431 5.7e-08 61.2 106 39.6
ClCG10G022140 Citrullus lanatus HOM05D003053 ORTHO05D003431 9.8e-08 60.5 106 41.5
Migut.F00685 Erythranthe guttata HOM05D003053 ORTHO05D003431 9.8e-08 60.5 115 40.0
Actinidia05365 Actinidia chinensis HOM05D003053 ORTHO05D003431 1.3e-07 60.1 112 41.1
vmacro08877 Vaccinium macrocarpon HOM05D003053 ORTHO05D003431 1.3e-07 60.1 130 40.0
vmacro10040 Vaccinium macrocarpon HOM05D003053 ORTHO05D003431 1.3e-07 60.1 139 38.8
Peaxi162Scf00957g00332 Petunia axillaris HOM05D003053 ORTHO05D003431 1.7e-07 59.7 93 45.2
Sopen06g017490 Solanum pennellii HOM05D003053 ORTHO05D003431 1.7e-07 59.7 126 40.5
HPP92_019005 Vanilla planifolia HOM05D003053 ORTHO05D051558 1.7e-07 59.7 111 39.6
Dinv17997 Davidia involucrata HOM05D003053 ORTHO05D003431 2.2e-07 59.3 114 44.7
CsaV3_3G033770 Cucumis sativus L. HOM05D003053 ORTHO05D003431 2.8e-07 58.9 106 39.6
DCAR_011813 Daucus carota HOM05D003053 ORTHO05D003431 2.8e-07 58.9 99 44.4
MD01G1153200 Malus domestica HOM05D003053 ORTHO05D003431 2.8e-07 58.9 99 42.4
Oeu005840.1 Olea europaea HOM05D003053 ORTHO05D003431 2.8e-07 58.9 133 39.1
CiPaw.01G298900 Carya illinoinensis HOM05D003053 ORTHO05D003431 3.7e-07 58.5 98 43.9
Ca_02149_v3 Cicer arietinum L. HOM05D003053 ORTHO05D003431 3.7e-07 58.5 113 40.7
Dinv10620 Davidia involucrata HOM05D003053 ORTHO05D003431 3.7e-07 58.5 109 42.2
Lalb_Chr10g0105161 Lupinus albus HOM05D003053 ORTHO05D003431 3.7e-07 58.5 41 65.9
CSS0027339 Camellia sinensis var. sinensis HOM05D003053 ORTHO05D003431 4.8e-07 58.2 119 40.3
CSS0045343 Camellia sinensis var. sinensis HOM05D003053 ORTHO05D003431 4.8e-07 58.2 97 43.3
Phvul.008G223800 Phaseolus vulgaris HOM05D003053 ORTHO05D003431 4.8e-07 58.2 124 39.5
Rhsim09G0177400 Rhododendron simsii HOM05D003053 ORTHO05D003431 4.8e-07 58.2 104 43.3
AUR62012254 Chenopodium quinoa HOM05D003053 ORTHO05D003431 6.3e-07 57.8 100 44.0
VMungo0647G2393 Vigna mungo HOM05D003053 ORTHO05D003431 6.3e-07 57.8 127 39.4
ATR0681G312 Amborella trichopoda HOM05D003053 ORTHO05D003431 8.3e-07 57.4 95 45.3
SGA_v2.0_scaffold60G21004 Striga asiatica HOM05D003053 ORTHO05D003431 8.3e-07 57.4 123 38.2
Glyma.02G257400 Glycine max HOM05D003053 ORTHO05D003431 1.1e-06 57.0 125 38.4
Sabra06G0077600 Salix brachista HOM05D003053 ORTHO05D003431 1.1e-06 57.0 118 39.8
Actinidia20735 Actinidia chinensis HOM05D003053 ORTHO05D003431 1.4e-06 56.6 115 36.5
MSTRG.27334 Avicennia marina HOM05D003053 ORTHO05D003431 1.8e-06 56.2 117 40.2
RcHm_v2.0_Chr3g0463021 Rosa chinensis HOM05D003053 ORTHO05D003431 1.8e-06 56.2 134 36.6
Dinv23116 Davidia involucrata HOM05D003053 ORTHO05D003431 2.4e-06 55.8 114 40.4
Lj6g0014618 Lotus japonicus HOM05D003053 ORTHO05D003431 2.4e-06 55.8 109 42.2
Aqoxy2G00880 Aquilegia oxysepala HOM05D003053 ORTHO05D003431 3.1e-06 55.5 117 38.5
BcaB01g00047 Brassica carinata HOM05D003053 ORTHO05D003431 3.1e-06 55.5 33 75.8
Eucgr.G03062 Eucalyptus grandis HOM05D003053 ORTHO05D003431 3.1e-06 55.5 97 45.4
PGR142G3167 Punica granatum HOM05D003053 ORTHO05D003431 3.1e-06 55.5 103 44.7
Sed0024785 Sechium edule HOM05D003053 ORTHO05D003431 3.1e-06 55.5 109 39.4
Glyma.14G059000 Glycine max HOM05D003053 ORTHO05D003431 4.1e-06 55.1 131 38.9
Manes.10G012000 Manihot esculenta HOM05D003053 ORTHO05D003431 4.1e-06 55.1 98 39.8
Actinidia13939 Actinidia chinensis HOM05D003053 ORTHO05D003431 5.4e-06 54.7 35 68.6
A07p22710 Brassica napus HOM05D003053 ORTHO05D003431 5.4e-06 54.7 96 42.7
Lalb_Chr04g0250581 Lupinus albus HOM05D003053 ORTHO05D003431 5.4e-06 54.7 99 41.4
Oeu048248.1 Olea europaea HOM05D003053 ORTHO05D003431 5.4e-06 54.7 139 40.3
Cfa001315 Carpinus fangiana HOM05D003053 ORTHO05D003431 7.0e-06 54.3 61 52.5
MELO3C009166.2 Cucumis melo HOM05D003053 ORTHO05D003431 7.0e-06 54.3 98 40.8
MD04G1153700 Malus domestica HOM05D003053 ORTHO05D003431 7.0e-06 54.3 130 36.2
Psat0s1465g0040 Pisum sativum HOM05D003053 ORTHO05D003431 7.0e-06 54.3 35 68.6
Prupe.6G277800 Prunus persica HOM05D003053 ORTHO05D003431 7.0e-06 54.3 96 43.8
BcaC08g44757 Brassica carinata HOM05D003053 ORTHO05D003431 9.1e-06 53.9 95 42.1
TPR.G38373 Trifolium pratense HOM05D003053 ORTHO05D003431 9.1e-06 53.9 35 68.6


User provided reference genes

Program Settings