Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 2.3e-151 538.9 278 100.0
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 2.7e-83 312.8 272 65.8
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 1.5e-25 120.9 275 34.5
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 5.4e-23 112.5 256 32.8
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 5.4e-23 112.5 267 33.3
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 5.4e-23 112.5 237 36.3
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 4.5e-22 109.4 272 35.3
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 1.3e-21 107.8 233 33.9
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 8.6e-21 105.1 246 34.1
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 1.1e-20 104.8 236 36.0
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 3.3e-20 103.2 236 34.3
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 9.5e-20 101.7 272 33.1
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.6e-19 100.9 248 34.3
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 1.6e-19 100.9 246 34.1
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 2.8e-19 100.1 253 31.6
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 3.6e-19 99.8 234 33.8
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 4.7e-19 99.4 221 36.7
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 4.7e-19 99.4 272 33.5
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 8.0e-19 98.6 239 34.3
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 8.0e-19 98.6 241 32.0
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 1.0e-18 98.2 231 32.9
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 2.3e-18 97.1 244 31.6
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 4.0e-18 96.3 238 35.7
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 4.0e-18 96.3 239 35.1
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 6.8e-18 95.5 234 34.6
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 6.8e-18 95.5 252 32.9
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 8.9e-18 95.1 239 35.1
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 8.9e-18 95.1 185 37.3
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 1.2e-17 94.7 262 30.9
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 1.2e-17 94.7 243 32.5
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 1.5e-17 94.4 241 32.4
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 1.5e-17 94.4 237 33.8
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 1.5e-17 94.4 244 31.1
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 2.6e-17 93.6 272 32.0
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 2.6e-17 93.6 253 31.6
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 3.4e-17 93.2 221 32.6
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 3.4e-17 93.2 237 33.3
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 4.4e-17 92.8 185 35.1
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 4.4e-17 92.8 237 33.3
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 4.4e-17 92.8 239 34.3
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 7.5e-17 92.0 253 32.0
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 1.3e-16 91.3 245 29.8
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 1.7e-16 90.9 244 33.2
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 1.7e-16 90.9 266 30.5
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 1.7e-16 90.9 238 31.9
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.2e-16 90.5 245 29.4
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 2.9e-16 90.1 253 31.6
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 6.4e-16 89.0 242 32.2
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 8.3e-16 88.6 196 31.6
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 1.1e-15 88.2 231 32.9
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 1.1e-15 88.2 235 33.6
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 1.9e-15 87.4 231 32.0
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.9e-15 87.4 267 30.3
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 2.4e-15 87.0 245 30.2
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 2.4e-15 87.0 223 34.1
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 3.2e-15 86.7 231 32.0
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 3.2e-15 86.7 234 30.8
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 7.0e-15 85.5 256 28.9
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 9.2e-15 85.1 231 32.5
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 9.2e-15 85.1 240 30.4
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 1.2e-14 84.7 236 31.4
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 2.0e-14 84.0 231 32.9
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 2.0e-14 84.0 199 30.7
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 2.7e-14 83.6 229 31.4
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 4.6e-14 82.8 199 30.7
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 1.3e-13 81.3 231 31.2
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 1.7e-13 80.9 236 29.7
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 3.0e-13 80.1 232 30.6
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 3.0e-13 80.1 232 30.6
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 3.0e-13 80.1 235 31.1
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 3.0e-13 80.1 246 30.1
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 3.0e-13 80.1 200 31.0
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 3.9e-13 79.7 236 28.4
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 3.9e-13 79.7 223 30.9
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 3.9e-13 79.7 199 30.2
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 3.9e-13 79.7 264 28.4
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 5.0e-13 79.3 234 31.6
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 5.0e-13 79.3 238 29.8
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 6.6e-13 79.0 110 43.6
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 8.6e-13 78.6 231 30.7
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 3.3e-12 76.6 268 26.9
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 7.3e-12 75.5 257 30.4
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 7.3e-12 75.5 161 35.4
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 9.5e-12 75.1 242 29.8
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 9.5e-12 75.1 247 29.6
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 1.6e-11 74.3 294 27.6
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 2.1e-11 73.9 196 30.6
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 2.1e-11 73.9 239 30.1
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 2.8e-11 73.6 264 28.8
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 1.1e-10 71.6 196 31.1
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 1.1e-10 71.6 197 29.4
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 4.0e-10 69.7 207 29.5
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 1.2e-09 68.2 242 27.7
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 2.6e-09 67.0 273 26.7
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 6.4e-08 62.4 186 28.0
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 6.4e-08 62.4 231 26.4
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 6.4e-08 62.4 150 33.3
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.1e-07 61.6 235 28.9
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 2.4e-07 60.5 164 31.1
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 2.7e-06 57.0 158 28.5


User provided reference genes

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