Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb350300 Zea mays HOM05D003645 ORTHO05D004395 1.9e-92 342.8 217 100.0
Os05g0238400 Oryza sativa ssp. japonica HOM05D003645 ORTHO05D004395 4.4e-65 251.9 188 73.9
Os01g0234700 Oryza sativa ssp. japonica HOM05D003645 ORTHO05D004395 4.5e-49 198.7 171 65.5
Zm00001eb119080 Zea mays HOM05D003645 ORTHO05D004395 9.3e-47 191.0 170 61.8
MBI06_g08483_MAGBIO Magnolia biondii HOM05D003645 ORTHO05D004395 3.2e-39 166.0 169 54.4
Glyma.05G217500 Glycine max HOM05D003645 ORTHO05D004395 1.3e-37 160.6 169 51.5
Glyma.08G023500 Glycine max HOM05D003645 ORTHO05D004395 2.3e-37 159.8 169 50.9
Phvul.002G298900 Phaseolus vulgaris HOM05D003645 ORTHO05D004395 3.0e-37 159.5 169 51.5
Medtr8g099560 Medicago truncatula HOM05D003645 ORTHO05D004395 8.7e-37 157.9 169 50.3
VMungo0251G3746 Vigna mungo HOM05D003645 ORTHO05D004395 8.7e-37 157.9 169 50.9
Ca_17476_v3 Cicer arietinum L. HOM05D003645 ORTHO05D004395 1.1e-36 157.5 169 50.3
CSS0029909 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 1.9e-36 156.8 172 48.8
CSS0035334 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 1.9e-36 156.8 172 48.8
Manes.02G009000 Manihot esculenta HOM05D003645 ORTHO05D004395 1.9e-36 156.8 168 49.4
Psat7g024440 Pisum sativum HOM05D003645 ORTHO05D004395 7.4e-36 154.8 169 49.7
Actinidia27314 Actinidia chinensis HOM05D003645 ORTHO05D004395 9.6e-36 154.5 169 49.7
Lj4g0007254 Lotus japonicus HOM05D003645 ORTHO05D004395 9.6e-36 154.5 169 50.3
Oeu009968.1 Olea europaea HOM05D003645 ORTHO05D004395 9.6e-36 154.5 172 46.5
HPP92_023897 Vanilla planifolia HOM05D003645 ORTHO05D004395 9.6e-36 154.5 171 49.7
Lj2P165T30 Lonicera japonica HOM05D003645 ORTHO05D004395 2.1e-35 153.3 172 48.8
Migut.E01256 Erythranthe guttata HOM05D003645 ORTHO05D004395 3.7e-35 152.5 170 50.0
Cpa.g.sc79.18 Carica papaya HOM05D003645 ORTHO05D004395 6.2e-35 151.8 169 45.6
TPR.G30941 Trifolium pratense HOM05D003645 ORTHO05D004395 6.2e-35 151.8 169 48.5
Gorai.003G078700 Gossypium raimondii HOM05D003645 ORTHO05D004395 8.1e-35 151.4 183 42.6
Glyma.01G226100 Glycine max HOM05D003645 ORTHO05D004395 1.1e-34 151.0 166 48.2
Duzib084G0645 Durio zibethinus HOM05D003645 ORTHO05D004395 1.4e-34 150.6 177 45.2
MELO3C016302.2 Cucumis melo HOM05D003645 ORTHO05D004395 1.8e-34 150.2 169 45.6
Hma1.2p1_0440F.1_g153400 Hydrangea macrophylla HOM05D003645 ORTHO05D004395 1.8e-34 150.2 172 47.1
Gohir.D03G083900 Gossypium hirsutum HOM05D003645 ORTHO05D004395 2.4e-34 149.8 183 42.1
Phvul.002G165000 Phaseolus vulgaris HOM05D003645 ORTHO05D004395 2.4e-34 149.8 169 48.5
Gohir.A02G099800 Gossypium hirsutum HOM05D003645 ORTHO05D004395 4.0e-34 149.1 183 42.6
SGA_v2.0_scaffold111G31406 Striga asiatica HOM05D003645 ORTHO05D004395 4.0e-34 149.1 172 47.1
TAR629G1680 Trochodendron aralioides HOM05D003645 ORTHO05D004395 4.0e-34 149.1 165 47.9
Sc01g0010350 Simmondsia chinensis HOM05D003645 ORTHO05D004395 6.9e-34 148.3 170 46.5
PGSC0003DMG400012142 Solanum tuberosum HOM05D003645 ORTHO05D004395 9.0e-34 147.9 172 46.5
Potri.001G090400 Populus trichocarpa HOM05D003645 ORTHO05D004395 1.2e-33 147.5 170 46.5
ClCG07G011530 Citrullus lanatus HOM05D003645 ORTHO05D004395 2.0e-33 146.7 168 46.4
Lalb_Chr09g0332361 Lupinus albus HOM05D003645 ORTHO05D004395 2.6e-33 146.4 166 46.4
Sabra01G0066600 Salix brachista HOM05D003645 ORTHO05D004395 2.6e-33 146.4 169 45.0
Cc08_g16180 Coffea canephora HOM05D003645 ORTHO05D004395 3.4e-33 146.0 172 46.5
Gohir.A12G237400 Gossypium hirsutum HOM05D003645 ORTHO05D004395 4.5e-33 145.6 178 44.9
Thecc.03G299800 Theobroma cacao HOM05D003645 ORTHO05D004395 4.5e-33 145.6 178 43.8
HPP92_008814 Vanilla planifolia HOM05D003645 ORTHO05D004395 5.8e-33 145.2 172 46.5
Lalb_Chr05g0224071 Lupinus albus HOM05D003645 ORTHO05D004395 1.0e-32 144.4 168 45.8
PGR042G2331 Punica granatum HOM05D003645 ORTHO05D004395 1.0e-32 144.4 186 44.6
Sopen08g030720 Solanum pennellii HOM05D003645 ORTHO05D004395 1.0e-32 144.4 172 45.3
Rhsim07G0081700 Rhododendron simsii HOM05D003645 ORTHO05D004395 1.3e-32 144.1 170 47.6
Solyc08g082470.1 Solanum lycopersicum HOM05D003645 ORTHO05D004395 1.3e-32 144.1 172 45.3
CiPaw.12G081900 Carya illinoinensis HOM05D003645 ORTHO05D004395 1.7e-32 143.7 171 45.0
Gohir.D12G238600 Gossypium hirsutum HOM05D003645 ORTHO05D004395 1.7e-32 143.7 178 44.4
Gorai.008G255500 Gossypium raimondii HOM05D003645 ORTHO05D004395 1.7e-32 143.7 178 44.4
Nn1g00238 Nelumbo nucifera HOM05D003645 ORTHO05D004395 3.8e-32 142.5 169 43.2
MD06G1108900 Malus domestica HOM05D003645 ORTHO05D004395 4.9e-32 142.1 171 46.2
Nn3g18992 Nelumbo nucifera HOM05D003645 ORTHO05D004395 4.9e-32 142.1 169 45.6
QL02p030173 Quercus lobata HOM05D003645 ORTHO05D004395 4.9e-32 142.1 167 47.3
TWI60G1019 Tripterygium wilfordii HOM05D003645 ORTHO05D004395 4.9e-32 142.1 173 44.5
Nitab4.5_0001210g0150 Nicotiana tabacum HOM05D003645 ORTHO05D004395 6.5e-32 141.7 172 44.2
Nitab4.5_0006775g0010 Nicotiana tabacum HOM05D003645 ORTHO05D004395 6.5e-32 141.7 172 44.2
Peaxi162Scf00074g00076 Petunia axillaris HOM05D003645 ORTHO05D004395 6.5e-32 141.7 172 43.0
Haze_09079 Corylus avellana HOM05D003645 ORTHO05D004395 8.4e-32 141.4 177 43.5
Haze_09080 Corylus avellana HOM05D003645 ORTHO05D004395 8.4e-32 141.4 177 43.5
TWI15G0699 Tripterygium wilfordii HOM05D003645 ORTHO05D004395 8.4e-32 141.4 172 43.6
FAN04G0742 Fragaria x ananassa HOM05D003645 ORTHO05D004395 1.1e-31 141.0 172 46.5
RcHm_v2.0_Chr7g0194471 Rosa chinensis HOM05D003645 ORTHO05D004395 1.1e-31 141.0 172 45.3
Solyc01g096000.2 Solanum lycopersicum HOM05D003645 ORTHO05D004395 1.1e-31 141.0 171 45.6
Prupe.5G121700 Prunus persica HOM05D003645 ORTHO05D004395 1.9e-31 140.2 166 44.0
Sc23g0002090 Simmondsia chinensis HOM05D003645 ORTHO05D004395 2.5e-31 139.8 169 46.2
Sopen01g039720 Solanum pennellii HOM05D003645 ORTHO05D004395 2.5e-31 139.8 172 44.8
PGSC0003DMG400000115 Solanum tuberosum HOM05D003645 ORTHO05D004395 2.5e-31 139.8 174 44.3
TAR636G1231 Trochodendron aralioides HOM05D003645 ORTHO05D004395 2.5e-31 139.8 166 44.0
Duzib205G1546 Durio zibethinus HOM05D003645 ORTHO05D004395 3.2e-31 139.4 176 42.0
SalBow6G5928 Salvia bowleyana HOM05D003645 ORTHO05D004395 4.2e-31 139.0 166 44.6
Glyma.11G016700 Glycine max HOM05D003645 ORTHO05D004395 5.5e-31 138.7 166 47.0
Potri.003G141200 Populus trichocarpa HOM05D003645 ORTHO05D004395 5.5e-31 138.7 169 43.8
Ciclev10022256m.g Citrus clementina HOM05D003645 ORTHO05D004395 7.1e-31 138.3 166 43.4
Sed0026909 Sechium edule HOM05D003645 ORTHO05D004395 7.1e-31 138.3 160 46.2
arahy.Tifrunner.gnm1.ann1.QCE7ZS Arachis hypogaea HOM05D003645 ORTHO05D004395 9.3e-31 137.9 171 46.2
SalBow8G5128 Salvia bowleyana HOM05D003645 ORTHO05D004395 9.3e-31 137.9 166 44.0
TPR.G37939 Trifolium pratense HOM05D003645 ORTHO05D004395 1.6e-30 137.1 171 43.3
CANSAT21G0134 Cannabis sativa HOM05D003645 ORTHO05D004395 2.1e-30 136.7 177 41.8
CAN.G1415.29 Capsicum annuum HOM05D003645 ORTHO05D004395 2.7e-30 136.3 169 43.8
CAN.G1804.15 Capsicum annuum HOM05D003645 ORTHO05D004395 2.7e-30 136.3 169 45.0
Nitab4.5_0013740g0010 Nicotiana tabacum HOM05D003645 ORTHO05D004395 2.7e-30 136.3 167 45.5
ATR0602G203 Amborella trichopoda HOM05D003645 ORTHO05D004395 3.5e-30 136.0 175 42.9
Lsat_1_v5_gn_6_83800 Lactuca sativa HOM05D003645 ORTHO05D004395 3.5e-30 136.0 166 44.6
PSO761G0226 Papaver somniferum HOM05D003645 ORTHO05D004395 3.5e-30 136.0 173 43.4
CsaV3_4G006680 Cucumis sativus L. HOM05D003645 ORTHO05D004395 4.6e-30 135.6 154 46.1
DCAR_005391 Daucus carota HOM05D003645 ORTHO05D004395 4.6e-30 135.6 168 43.5
Lalb_Chr09g0320621 Lupinus albus HOM05D003645 ORTHO05D004395 4.6e-30 135.6 169 44.4
Sabra03G0101700 Salix brachista HOM05D003645 ORTHO05D004395 4.6e-30 135.6 169 43.2
Lsat_1_v5_gn_4_33021 Lactuca sativa HOM05D003645 ORTHO05D004395 7.9e-30 134.8 169 42.6
MD14G1129800 Malus domestica HOM05D003645 ORTHO05D004395 7.9e-30 134.8 169 42.6
CSS0000881 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 1.0e-29 134.4 169 43.8
THA.LOC104806437 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 1.0e-29 134.4 168 42.3
LjContig00222g0023656 Lotus japonicus HOM05D003645 ORTHO05D004395 1.8e-29 133.7 166 42.2
PSO135G0996 Papaver somniferum HOM05D003645 ORTHO05D004395 1.8e-29 133.7 166 40.4
Dinv38825 Davidia involucrata HOM05D003645 ORTHO05D004395 2.3e-29 133.3 157 45.2
PSO384G2325 Papaver somniferum HOM05D003645 ORTHO05D004395 3.0e-29 132.9 166 39.8
Hma1.2p1_0139F.1_g063270 Hydrangea macrophylla HOM05D003645 ORTHO05D004395 1.1e-28 131.0 169 43.2
PSO210G6387 Papaver somniferum HOM05D003645 ORTHO05D004395 1.1e-28 131.0 173 42.8
Rhsim01G0172700 Rhododendron simsii HOM05D003645 ORTHO05D004395 1.1e-28 131.0 168 43.5
Eucgr.D01751 Eucalyptus grandis HOM05D003645 ORTHO05D004395 1.9e-28 130.2 191 39.8
Cc02_g39420 Coffea canephora HOM05D003645 ORTHO05D004395 3.3e-28 129.4 170 41.8
Ah.12g052620 Amaranthus hybridus HOM05D003645 ORTHO05D004395 7.4e-28 128.3 167 41.3
Aqoxy7G00085 Aquilegia oxysepala HOM05D003645 ORTHO05D004395 7.4e-28 128.3 170 40.6
DCAR_025255 Daucus carota HOM05D003645 ORTHO05D004395 9.6e-28 127.9 171 44.4
Medtr5g009130 Medicago truncatula HOM05D003645 ORTHO05D004395 1.3e-27 127.5 171 41.5
Sp7g21900 Schrenkiella parvula HOM05D003645 ORTHO05D004395 1.3e-27 127.5 166 39.8
CiPaw.11G119800 Carya illinoinensis HOM05D003645 ORTHO05D004395 1.6e-27 127.1 162 44.4
Duzib068G0630 Durio zibethinus HOM05D003645 ORTHO05D004395 1.6e-27 127.1 171 40.9
Lsat_1_v5_gn_3_140300 Lactuca sativa HOM05D003645 ORTHO05D004395 2.8e-27 126.3 168 42.9
FAN18G2610 Fragaria x ananassa HOM05D003645 ORTHO05D004395 1.1e-26 124.4 154 46.1
CARHR231360 Cardamine hirsuta HOM05D003645 ORTHO05D004395 1.4e-26 124.0 169 39.6
A03p54860 Brassica napus HOM05D003645 ORTHO05D004395 1.8e-26 123.6 166 41.6
C07p53240 Brassica napus HOM05D003645 ORTHO05D004395 1.8e-26 123.6 166 41.6
BolC7t45819H Brassica oleracea HOM05D003645 ORTHO05D004395 1.8e-26 123.6 166 41.6
BraA03t14553Z Brassica rapa HOM05D003645 ORTHO05D004395 1.8e-26 123.6 166 41.6
Migut.B01875 Erythranthe guttata HOM05D003645 ORTHO05D004395 3.1e-26 122.9 167 42.5
Psat2g185920 Pisum sativum HOM05D003645 ORTHO05D004395 3.1e-26 122.9 169 41.4
Ca_24497_v3 Cicer arietinum L. HOM05D003645 ORTHO05D004395 4.1e-26 122.5 164 42.1
AT4G23930 Arabidopsis thaliana HOM05D003645 ORTHO05D004395 6.9e-26 121.7 166 39.8
BcaNung01100 Brassica carinata HOM05D003645 ORTHO05D004395 6.9e-26 121.7 167 37.7
MSTRG.17346 Avicennia marina HOM05D003645 ORTHO05D004395 9.0e-26 121.3 165 42.4
SGA_v2.0_scaffold5G03021 Striga asiatica HOM05D003645 ORTHO05D004395 9.0e-26 121.3 169 42.0
HPP92_023824 Vanilla planifolia HOM05D003645 ORTHO05D004395 9.0e-26 121.3 93 61.3
C01p19170 Brassica napus HOM05D003645 ORTHO05D004395 1.2e-25 120.9 166 39.2
Dinv32594 Davidia involucrata HOM05D003645 ORTHO05D004395 1.2e-25 120.9 161 42.9
THA.LOC104817593 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 1.2e-25 120.9 262 35.5
BcaNung04245 Brassica carinata HOM05D003645 ORTHO05D004395 2.0e-25 120.2 166 41.0
BcaNung04246 Brassica carinata HOM05D003645 ORTHO05D004395 2.0e-25 120.2 166 41.0
BcaC09g50929 Brassica carinata HOM05D003645 ORTHO05D004395 2.6e-25 119.8 166 39.2
A01p15240 Brassica napus HOM05D003645 ORTHO05D004395 2.6e-25 119.8 166 38.6
BolC1t01843H Brassica oleracea HOM05D003645 ORTHO05D004395 2.6e-25 119.8 166 39.2
BraA01t01462Z Brassica rapa HOM05D003645 ORTHO05D004395 3.4e-25 119.4 166 38.6
Thhalv10026760m.g Eutrema salsugineum HOM05D003645 ORTHO05D004395 3.4e-25 119.4 170 39.4
AUR62023456 Chenopodium quinoa HOM05D003645 ORTHO05D004395 5.9e-25 118.6 157 43.3
AL7G29380 Arabidopsis lyrata HOM05D003645 ORTHO05D004395 2.9e-24 116.3 166 38.6
AUR62004497 Chenopodium quinoa HOM05D003645 ORTHO05D004395 2.9e-24 116.3 155 41.3
EL10Ac5g12927 Beta vulgaris HOM05D003645 ORTHO05D004395 3.8e-24 115.9 168 39.3
Oeu007891.1 Olea europaea HOM05D003645 ORTHO05D004395 5.0e-24 115.5 178 38.2
Oeu007892.1 Olea europaea HOM05D003645 ORTHO05D004395 5.0e-24 115.5 178 38.2
SGA_v2.0_scaffold96G29020 Striga asiatica HOM05D003645 ORTHO05D004395 5.0e-24 115.5 168 37.5
A09p14690 Brassica napus HOM05D003645 ORTHO05D004395 6.5e-24 115.2 122 48.4
BraA09t37115Z Brassica rapa HOM05D003645 ORTHO05D004395 6.5e-24 115.2 122 48.4
Thhalv10023571m.g Eutrema salsugineum HOM05D003645 ORTHO05D004395 8.5e-24 114.8 122 50.0
Aa31LG6G7170 Aethionema arabicum HOM05D003645 ORTHO05D004395 1.4e-23 114.0 166 36.7
C09p17780 Brassica napus HOM05D003645 ORTHO05D004395 1.4e-23 114.0 112 50.0
BolC9t54676H Brassica oleracea HOM05D003645 ORTHO05D004395 1.4e-23 114.0 112 50.0
Ah.05g179520 Amaranthus hybridus HOM05D003645 ORTHO05D004395 1.9e-23 113.6 155 40.6
Aa31LG2G1450 Aethionema arabicum HOM05D003645 ORTHO05D004395 3.2e-23 112.8 111 52.3
Sp2g00290 Schrenkiella parvula HOM05D003645 ORTHO05D004395 5.5e-23 112.1 112 51.8
CARHR046480 Cardamine hirsuta HOM05D003645 ORTHO05D004395 7.2e-23 111.7 110 50.9
Atru.chr9.1968 Acer truncatum HOM05D003645 ORTHO05D004395 9.3e-23 111.3 156 40.4
CDE10G1317 Ceratophyllum demersum HOM05D003645 ORTHO05D004395 9.3e-23 111.3 89 58.4
SalBow3G4392 Salvia bowleyana HOM05D003645 ORTHO05D004395 9.3e-23 111.3 169 38.5
Carub.0002s0032 Capsella rubella HOM05D003645 ORTHO05D004395 1.2e-22 110.9 112 50.9
AT1G64450 Arabidopsis thaliana HOM05D003645 ORTHO05D004395 3.6e-22 109.4 112 50.9
GSVIVG01027151001 Vitis vinifera HOM05D003645 ORTHO05D004395 3.6e-22 109.4 89 56.2
THA.LOC104809648 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 4.6e-22 109.0 107 52.3
HanXRQChr13g0415381 Helianthus annuus HOM05D003645 ORTHO05D004395 1.0e-21 107.8 169 37.3
Peaxi162Scf00786g00005 Petunia axillaris HOM05D003645 ORTHO05D004395 6.7e-21 105.1 132 47.0
Carub.0007s1715 Capsella rubella HOM05D003645 ORTHO05D004395 1.1e-20 104.4 166 34.9
Actinidia22734 Actinidia chinensis HOM05D003645 ORTHO05D004395 2.5e-20 103.2 166 39.8
unitig_899.g14798 Utricularia gibba HOM05D003645 ORTHO05D004395 2.5e-20 103.2 165 35.8
Oeu038544.1 Olea europaea HOM05D003645 ORTHO05D004395 7.4e-20 101.7 79 59.5
ECA240G4713 Erigeron canadensis HOM05D003645 ORTHO05D004395 4.5e-17 92.4 166 33.1
HanXRQChr05g0137521 Helianthus annuus HOM05D003645 ORTHO05D004395 2.2e-16 90.1 92 44.6
ECA240G2545 Erigeron canadensis HOM05D003645 ORTHO05D004395 1.9e-15 87.0 169 32.0
SEGI_37318 Sequoiadendron giganteum HOM05D003645 ORTHO05D004395 1.2e-14 84.3 159 33.3
AL2G10400 Arabidopsis lyrata HOM05D003645 ORTHO05D004395 8.8e-13 78.2 112 42.9
AUR62010853 Chenopodium quinoa HOM05D003645 ORTHO05D004395 2.8e-11 73.2 106 41.5
EL10Ac5g12926 Beta vulgaris HOM05D003645 ORTHO05D039030 6.3e-11 72.0 172 26.2
SEGI_21261 Sequoiadendron giganteum HOM05D003645 ORTHO05D004395 3.1e-10 69.7 147 32.0
Oeu049385.1 Olea europaea HOM05D003645 ORTHO05D004395 4.1e-10 69.3 84 45.2
CDE10G0641 Ceratophyllum demersum HOM05D003645 ORTHO05D021199 2.6e-09 66.6 51 58.8
SMO119G0408 Selaginella moellendorffii HOM05D000172 ORTHO05D000273 2.2e-08 63.5 169 27.8
SHI06963 Sapria himalayana HOM05D003645 ORTHO05D004395 5.0e-08 62.4 162 32.1
AUR62019851 Chenopodium quinoa HOM05D003645 ORTHO05D039030 6.5e-08 62.0 172 27.3
BcaB07g31466 Brassica carinata HOM05D003645 ORTHO05D004395 1.6e-06 57.4 48 56.2
Sopen10g027220 Solanum pennellii HOM05D000172 ORTHO05D000273 6.1e-06 55.5 174 22.4
PGSC0003DMG401027691 Solanum tuberosum HOM05D000172 ORTHO05D000273 6.1e-06 55.5 174 22.4


User provided reference genes

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