Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 3.2e-108 395.2 217 100.0
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 8.7e-21 104.8 211 40.3
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 5.7e-20 102.1 98 56.1
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 9.7e-20 101.3 98 53.1
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 1.3e-19 100.9 98 54.1
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 2.8e-19 99.8 98 54.1
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 2.8e-19 99.8 98 54.1
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 2.8e-19 99.8 100 56.0
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 3.7e-19 99.4 199 37.2
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 4.8e-19 99.0 98 52.0
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 4.8e-19 99.0 98 54.1
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 4.8e-19 99.0 98 54.1
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 8.2e-19 98.2 98 52.0
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 8.2e-19 98.2 95 54.7
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 1.1e-18 97.8 95 54.7
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 1.4e-18 97.4 85 62.4
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 1.8e-18 97.1 199 37.2
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 2.4e-18 96.7 107 51.4
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 2.4e-18 96.7 107 51.4
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 3.1e-18 96.3 205 35.6
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 3.1e-18 96.3 94 53.2
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 3.1e-18 96.3 94 53.2
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 3.1e-18 96.3 57 75.4
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 3.1e-18 96.3 94 53.2
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 3.1e-18 96.3 93 53.8
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 4.1e-18 95.9 207 34.3
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 5.3e-18 95.5 107 50.5
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 5.3e-18 95.5 59 69.5
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 6.9e-18 95.1 98 49.0
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 6.9e-18 95.1 98 50.0
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 6.9e-18 95.1 207 36.2
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 6.9e-18 95.1 94 52.1
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 6.9e-18 95.1 94 52.1
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 9.1e-18 94.7 57 70.2
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 9.1e-18 94.7 97 51.5
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 1.2e-17 94.4 57 70.2
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 1.2e-17 94.4 212 34.9
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 1.2e-17 94.4 57 70.2
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 1.5e-17 94.0 57 73.7
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 1.5e-17 94.0 195 36.9
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 2.0e-17 93.6 57 71.9
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 2.0e-17 93.6 98 48.0
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 2.0e-17 93.6 201 36.3
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 2.6e-17 93.2 91 51.6
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 2.6e-17 93.2 57 71.9
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 2.6e-17 93.2 194 36.1
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 3.4e-17 92.8 57 70.2
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 3.4e-17 92.8 57 68.4
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 4.5e-17 92.4 98 49.0
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 5.9e-17 92.0 97 59.8
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 5.9e-17 92.0 107 48.6
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 7.7e-17 91.7 57 70.2
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 7.7e-17 91.7 57 70.2
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 7.7e-17 91.7 57 71.9
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 7.7e-17 91.7 57 71.9
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 7.7e-17 91.7 57 71.9
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 7.7e-17 91.7 195 34.4
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 7.7e-17 91.7 179 40.2
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 1.0e-16 91.3 57 68.4
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 1.0e-16 91.3 198 34.3
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 1.0e-16 91.3 206 34.5
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 1.3e-16 90.9 57 70.2
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 1.3e-16 90.9 57 70.2
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 1.3e-16 90.9 57 70.2
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 1.3e-16 90.9 55 69.1
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 1.3e-16 90.9 98 49.0
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 1.3e-16 90.9 93 50.5
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 1.3e-16 90.9 196 38.3
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 1.3e-16 90.9 57 66.7
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 1.3e-16 90.9 91 51.6
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 1.7e-16 90.5 57 68.4
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 2.2e-16 90.1 203 36.0
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 2.9e-16 89.7 91 49.5
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 2.9e-16 89.7 200 36.0
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 2.9e-16 89.7 95 47.4
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 3.8e-16 89.4 57 68.4
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 5.0e-16 89.0 57 68.4
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 5.0e-16 89.0 200 36.5
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 5.0e-16 89.0 98 49.0
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 6.5e-16 88.6 57 66.7
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 6.5e-16 88.6 57 68.4
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 1.1e-15 87.8 56 71.4
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 1.4e-15 87.4 57 66.7
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 1.9e-15 87.0 57 64.9
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 1.9e-15 87.0 195 32.8
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 1.9e-15 87.0 194 35.1
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 1.9e-15 87.0 56 71.4
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 2.5e-15 86.7 195 35.4
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 2.5e-15 86.7 196 35.2
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 2.5e-15 86.7 196 36.7
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 3.2e-15 86.3 98 45.9
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 3.2e-15 86.3 107 44.9
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 3.2e-15 86.3 197 35.5
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 3.2e-15 86.3 56 67.9
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 4.2e-15 85.9 197 35.5
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 4.2e-15 85.9 185 35.1
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 7.2e-15 85.1 97 49.5
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 9.4e-15 84.7 57 64.9
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 1.2e-14 84.3 104 45.2
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 1.6e-14 84.0 57 70.2
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 2.1e-14 83.6 57 63.2
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 2.1e-14 83.6 57 70.2
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 2.1e-14 83.6 57 64.9
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 2.7e-14 83.2 207 33.3
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 2.7e-14 83.2 57 66.7
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 2.7e-14 83.2 197 35.5
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 2.7e-14 83.2 57 61.4
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 4.6e-14 82.4 57 63.2
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 6.1e-14 82.0 190 34.7
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 7.9e-14 81.6 57 61.4
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 1.0e-13 81.3 211 36.5
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 1.4e-13 80.9 57 68.4
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 1.4e-13 80.9 57 68.4
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 1.4e-13 80.9 57 68.4
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 1.8e-13 80.5 57 61.4
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 2.3e-13 80.1 195 34.9
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 3.9e-13 79.3 191 34.0
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 5.1e-13 79.0 57 59.6
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 8.8e-13 78.2 191 33.5
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 1.1e-12 77.8 202 32.2
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 1.5e-12 77.4 57 59.6
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 1.5e-12 77.4 57 59.6
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 1.5e-12 77.4 85 48.2
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 7.4e-12 75.1 189 33.3
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 9.7e-12 74.7 57 57.9
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 9.7e-12 74.7 57 57.9
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 9.7e-12 74.7 57 57.9
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 9.7e-12 74.7 57 57.9
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 8.2e-11 71.6 45 66.7
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 1.4e-10 70.9 49 59.2
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 5.3e-10 68.9 85 44.7
SEGI_34718 Sequoiadendron giganteum HOM05D005957 ORTHO05D007318 1.0e-08 64.7 57 52.6


User provided reference genes

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