Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb350040 Zea mays HOM05D000370 ORTHO05D006313 3.8e-60 234.6 112 100.0
Zm00001eb227220 Zea mays HOM05D000370 ORTHO05D006313 6.5e-12 74.3 53 67.9
Os06g0704100 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 1.5e-11 73.2 53 66.0
CiPaw.02G129400 Carya illinoinensis HOM05D000370 ORTHO05D006313 1.6e-10 69.7 53 66.0
Ah.08g218000 Amaranthus hybridus HOM05D000370 ORTHO05D006313 2.1e-10 69.3 53 64.2
ATR0626G124 Amborella trichopoda HOM05D000370 ORTHO05D006313 2.1e-10 69.3 53 64.2
EL10Ac7g18106 Beta vulgaris HOM05D000370 ORTHO05D006313 4.7e-10 68.2 53 62.3
AUR62001306 Chenopodium quinoa HOM05D000370 ORTHO05D006313 4.7e-10 68.2 53 62.3
AUR62025688 Chenopodium quinoa HOM05D000370 ORTHO05D006313 4.7e-10 68.2 53 62.3
CSS0030510 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 62.3
CSS0048464 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 62.3
CANSAT01G2135 Cannabis sativa HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 64.2
Cpa.g.sc1036.2 Carica papaya HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 64.2
Haze_16167 Corylus avellana HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 64.2
Duzib192G0552 Durio zibethinus HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 64.2
Duzib235G0455 Durio zibethinus HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 64.2
Potri.007G003900 Populus trichocarpa HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 62.3
Prupe.3G027500 Prunus persica HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 64.2
QL05p089080 Quercus lobata HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 64.2
TWI12G1236 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 64.2
GSVIVG01029452001 Vitis vinifera HOM05D000370 ORTHO05D006313 6.1e-10 67.8 53 64.2
Sabra07G0002900 Salix brachista HOM05D000370 ORTHO05D006313 1.0e-09 67.0 53 62.3
Hund18552 Selenicereus undatus HOM05D000370 ORTHO05D006313 1.0e-09 67.0 53 60.4
Thecc.06G050400 Theobroma cacao HOM05D000370 ORTHO05D006313 1.0e-09 67.0 53 62.3
Actinidia38821 Actinidia chinensis HOM05D000370 ORTHO05D006313 1.4e-09 66.6 53 62.3
CiPaw.01G209200 Carya illinoinensis HOM05D000370 ORTHO05D006313 1.4e-09 66.6 53 62.3
TWI18G0896 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 1.4e-09 66.6 53 62.3
ClCG05G010450 Citrullus lanatus HOM05D000370 ORTHO05D006313 1.8e-09 66.2 53 62.3
MELO3C019563.2 Cucumis melo HOM05D000370 ORTHO05D006313 1.8e-09 66.2 53 62.3
CsaV3_3G018040 Cucumis sativus L. HOM05D000370 ORTHO05D006313 1.8e-09 66.2 53 62.3
MBI13_g09077_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D006313 1.8e-09 66.2 53 60.4
MD17G1157700 Malus domestica HOM05D000370 ORTHO05D006313 1.8e-09 66.2 53 62.3
Rhsim08G0252100 Rhododendron simsii HOM05D000370 ORTHO05D006313 1.8e-09 66.2 53 60.4
TAR626G1046 Trochodendron aralioides HOM05D000370 ORTHO05D006313 1.8e-09 66.2 52 61.5
CARHR087550 Cardamine hirsuta HOM05D000370 ORTHO05D006313 3.0e-09 65.5 53 58.5
Gohir.A05G116100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 3.0e-09 65.5 53 62.3
Gohir.D05G117000 Gossypium hirsutum HOM05D000370 ORTHO05D006313 3.0e-09 65.5 53 62.3
Gorai.009G121000 Gossypium raimondii HOM05D000370 ORTHO05D006313 3.0e-09 65.5 53 62.3
Hma1.2p1_1098F.1_g256740 Hydrangea macrophylla HOM05D000370 ORTHO05D006313 3.0e-09 65.5 53 60.4
Nn8g41277 Nelumbo nucifera HOM05D000370 ORTHO05D006313 3.0e-09 65.5 52 63.5
Sed0024696 Sechium edule HOM05D000370 ORTHO05D006313 3.0e-09 65.5 53 62.3
ATR0006G062 Amborella trichopoda HOM05D000370 ORTHO05D006313 4.0e-09 65.1 53 60.4
Carub.0003s1234 Capsella rubella HOM05D000370 ORTHO05D006313 5.2e-09 64.7 53 58.5
Thhalv10020358m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 5.2e-09 64.7 53 58.5
FvH4_6g36420 Fragaria vesca HOM05D000370 ORTHO05D006313 5.2e-09 64.7 53 60.4
FAN05G4541 Fragaria x ananassa HOM05D000370 ORTHO05D006313 5.2e-09 64.7 53 60.4
FAN09G0130 Fragaria x ananassa HOM05D000370 ORTHO05D006313 5.2e-09 64.7 53 60.4
FAN14G2100 Fragaria x ananassa HOM05D000370 ORTHO05D006313 5.2e-09 64.7 53 60.4
MD09G1169500 Malus domestica HOM05D000370 ORTHO05D006313 5.2e-09 64.7 53 62.3
THA.LOC104812341 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 5.2e-09 64.7 62 54.8
BcaB06g25494 Brassica carinata HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
BcaC05g29217 Brassica carinata HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
BcaC05g29218 Brassica carinata HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
A05p36500 Brassica napus HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
C03p46040 Brassica napus HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
C05p54900 Brassica napus HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
BolC5t34160H Brassica oleracea HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
BraA05t22451Z Brassica rapa HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
CDE04G3500 Ceratophyllum demersum HOM05D000370 ORTHO05D006313 6.8e-09 64.3 52 61.5
Ciclev10028485m.g Citrus clementina HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 58.5
Eucgr.F04059 Eucalyptus grandis HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 60.4
Manes.03G054600 Manihot esculenta HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
PSO063G1283 Papaver somniferum HOM05D000370 ORTHO05D006313 6.8e-09 64.3 52 61.5
PSO170G0708 Papaver somniferum HOM05D000370 ORTHO05D006313 6.8e-09 64.3 52 61.5
PGR102G3330 Punica granatum HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 60.4
RcHm_v2.0_Chr2g0148391 Rosa chinensis HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 60.4
THA.LOC104822748 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 58.5
GSVIVG01014994001 Vitis vinifera HOM05D000370 ORTHO05D006313 6.8e-09 64.3 53 56.6
Dinv20314 Davidia involucrata HOM05D000370 ORTHO05D006313 8.8e-09 63.9 53 62.3
AL3G24720 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 1.2e-08 63.5 53 56.6
AT3G13000 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 1.2e-08 63.5 53 56.6
BolC3t16876H Brassica oleracea HOM05D000370 ORTHO05D006313 1.2e-08 63.5 51 58.8
Os02g0153000 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 1.2e-08 63.5 53 60.4
Sp3g11160 Schrenkiella parvula HOM05D000370 ORTHO05D006313 1.2e-08 63.5 53 56.6
vmacro18723 Vaccinium macrocarpon HOM05D000370 ORTHO05D006313 1.2e-08 63.5 53 58.5
Aa31LG8G240 Aethionema arabicum HOM05D000370 ORTHO05D006313 1.5e-08 63.2 53 56.6
MBI13_g08746_MAGBIO Magnolia biondii HOM05D001253 ORTHO05D001086 2.0e-08 62.8 52 59.6
Manes.14G000500 Manihot esculenta HOM05D000370 ORTHO05D006313 2.0e-08 62.8 53 58.5
Sed0025802 Sechium edule HOM05D000370 ORTHO05D006313 2.0e-08 62.8 53 58.5
SEGI_40993 Sequoiadendron giganteum HOM05D000370 ORTHO05D006313 2.6e-08 62.4 53 58.5
Cpa.g.sc82.38 Carica papaya HOM05D000370 ORTHO05D006313 3.4e-08 62.0 53 52.8
Eucgr.C00757 Eucalyptus grandis HOM05D000370 ORTHO05D006313 3.4e-08 62.0 53 58.5
Pp3c13_8290 Physcomitrium patens HOM05D000370 ORTHO05D006313 3.4e-08 62.0 72 44.4
Pp3c3_3580 Physcomitrium patens HOM05D000370 ORTHO05D006313 3.4e-08 62.0 72 44.4
Atru.chr7.1800 Acer truncatum HOM05D000370 ORTHO05D006313 4.4e-08 61.6 53 54.7
Aa31LG7G1210 Aethionema arabicum HOM05D000370 ORTHO05D006313 4.4e-08 61.6 53 54.7
BraA03t12947Z Brassica rapa HOM05D000370 ORTHO05D006313 4.4e-08 61.6 53 54.7
FAN02G1594 Fragaria x ananassa HOM05D000370 ORTHO05D006313 4.4e-08 61.6 53 58.5
AL1G28920 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 5.7e-08 61.2 58 51.7
HPP92_016711 Vanilla planifolia HOM05D000370 ORTHO05D006313 5.7e-08 61.2 53 60.4
HPP92_027162 Vanilla planifolia HOM05D000370 ORTHO05D006313 5.7e-08 61.2 53 60.4
A03p37930 Brassica napus HOM05D000370 ORTHO05D006313 1.3e-07 60.1 53 52.8
C08p17540 Brassica napus HOM05D000370 ORTHO05D006313 1.3e-07 60.1 53 52.8
BolC8t49380H Brassica oleracea HOM05D000370 ORTHO05D006313 1.3e-07 60.1 53 52.8
SHI27952 Sapria himalayana HOM05D000370 ORTHO05D006313 1.3e-07 60.1 53 54.7
AT1G16750 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 2.2e-07 59.3 53 52.8
BcaB03g13033 Brassica carinata HOM05D000370 ORTHO05D006313 2.2e-07 59.3 53 52.8
BcaC07g38812 Brassica carinata HOM05D000370 ORTHO05D006313 2.2e-07 59.3 53 52.8
Carub.0001s1649 Capsella rubella HOM05D000370 ORTHO05D006313 2.2e-07 59.3 53 52.8
CARHR017210 Cardamine hirsuta HOM05D000370 ORTHO05D006313 2.2e-07 59.3 53 52.8
Os06g0692800 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 2.2e-07 59.3 53 56.6
Sp1g14900 Schrenkiella parvula HOM05D000370 ORTHO05D006313 2.2e-07 59.3 53 52.8
Potri.006G216800 Populus trichocarpa HOM05D000370 ORTHO05D006313 4.8e-07 58.2 53 52.8
Sabra06G0167200 Salix brachista HOM05D000370 ORTHO05D006313 4.8e-07 58.2 53 52.8
Zm00001eb273360 Zea mays HOM05D000370 ORTHO05D006313 4.8e-07 58.2 53 54.7
A08p31290 Brassica napus HOM05D000370 ORTHO05D006313 6.3e-07 57.8 53 50.9
BraA08t35052Z Brassica rapa HOM05D000370 ORTHO05D006313 6.3e-07 57.8 53 50.9
Thhalv10007325m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 1.4e-06 56.6 53 50.9
SMO361G0174 Selaginella moellendorffii HOM05D000370 ORTHO05D006313 2.4e-06 55.8 53 49.1
Pp3c17_15980 Physcomitrium patens HOM05D000370 ORTHO05D006313 7.0e-06 54.3 56 55.4
Mapoly0019s0124 Marchantia polymorpha HOM05D000370 ORTHO05D006313 9.1e-06 53.9 53 49.1


User provided reference genes

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