Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 8.8e-128 460.3 232 100.0
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 4.1e-93 345.1 192 95.3
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 5.4e-93 344.7 192 94.8
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.6e-92 343.2 192 94.3
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 8.6e-91 337.4 180 98.3
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 6.6e-75 284.6 185 78.9
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.3e-70 270.4 185 75.1
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.3e-70 270.4 146 96.6
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 3.7e-70 268.9 179 74.3
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 6.4e-70 268.1 176 77.3
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 6.4e-70 268.1 176 75.0
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.1e-69 267.3 176 75.6
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.9e-69 266.5 176 76.7
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.9e-69 266.5 176 75.0
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.4e-69 266.2 179 73.7
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 3.2e-69 265.8 185 73.5
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 3.2e-69 265.8 185 73.5
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.1e-69 265.4 179 73.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 4.1e-69 265.4 179 73.7
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 5.4e-69 265.0 176 75.0
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 9.2e-69 264.2 176 75.6
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 9.2e-69 264.2 168 77.4
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 9.2e-69 264.2 176 75.0
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.2e-68 263.8 176 74.4
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.2e-68 263.8 176 73.9
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.6e-68 263.5 176 75.6
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.1e-68 263.1 179 74.9
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 2.1e-68 263.1 176 75.6
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 2.7e-68 262.7 179 72.1
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.7e-68 262.7 179 73.7
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 3.5e-68 262.3 179 72.6
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 3.5e-68 262.3 179 73.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 4.6e-68 261.9 177 74.0
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 4.6e-68 261.9 176 73.9
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 7.8e-68 261.2 177 74.0
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.0e-67 260.8 176 74.4
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.7e-67 260.0 177 73.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.7e-67 260.0 176 75.0
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 2.3e-67 259.6 182 71.4
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.0e-67 259.2 177 74.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.9e-67 258.8 179 70.9
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.9e-67 258.8 167 77.2
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 6.6e-67 258.1 176 73.9
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 8.6e-67 257.7 179 71.5
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.1e-66 257.3 177 71.8
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.1e-66 257.3 177 71.8
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.1e-66 257.3 179 70.9
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.1e-66 257.3 176 73.3
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.5e-66 256.9 176 72.7
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.5e-66 256.9 181 70.2
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.9e-66 256.5 177 72.3
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.9e-66 256.5 182 69.8
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.5e-66 256.1 180 71.1
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 2.5e-66 256.1 180 71.7
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.5e-66 256.1 177 71.8
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.5e-66 256.1 179 72.6
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.3e-66 255.8 182 69.8
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.3e-66 255.4 179 70.4
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 4.3e-66 255.4 176 73.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.3e-66 255.4 176 71.6
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 4.3e-66 255.4 176 71.6
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 5.6e-66 255.0 179 71.5
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 5.6e-66 255.0 176 72.7
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 7.3e-66 254.6 177 71.8
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 7.3e-66 254.6 176 72.7
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 7.3e-66 254.6 179 69.3
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 9.5e-66 254.2 176 72.7
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.2e-65 253.8 177 70.6
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.2e-65 253.8 177 70.6
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.1e-65 253.1 176 71.0
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.6e-65 252.3 177 70.1
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.6e-65 252.3 179 70.9
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 3.6e-65 252.3 177 70.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 4.7e-65 251.9 182 69.2
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 4.7e-65 251.9 195 67.7
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 8.1e-65 251.1 179 70.9
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.4e-64 250.4 176 71.6
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.4e-64 249.6 179 69.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.4e-64 249.6 179 69.8
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.4e-64 249.6 176 72.7
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 2.4e-64 249.6 179 69.3
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 3.1e-64 249.2 179 69.8
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.1e-64 249.2 176 68.8
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 8.9e-64 247.7 176 69.3
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.2e-63 247.3 176 69.9
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.6e-63 246.1 180 67.8
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.4e-63 245.4 177 68.9
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 9.9e-63 244.2 179 66.5
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 2.2e-62 243.0 176 68.2
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.9e-62 242.7 178 68.0
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 6.4e-62 241.5 176 69.3
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.4e-61 238.4 195 64.1
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 5.4e-61 238.4 211 60.2
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.7e-60 236.1 176 63.6
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 4.6e-60 235.3 176 67.6
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 4.6e-60 235.3 176 63.6
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.0e-59 234.2 211 59.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.9e-58 229.9 227 56.4
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 7.3e-58 228.0 159 70.4
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.1e-57 226.5 161 69.6
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.1e-56 224.2 143 75.5
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 4.0e-56 222.2 180 65.6
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 6.9e-56 221.5 179 64.8
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.6e-55 219.5 181 63.5
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.8e-54 215.7 168 66.1
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.8e-54 215.7 208 58.2
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.4e-54 214.9 143 73.4
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.4e-53 213.8 199 57.8
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 5.4e-53 211.8 141 71.6
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 6.0e-52 208.4 179 59.2
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 6.0e-52 208.4 138 73.9
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.5e-50 203.8 178 57.3
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.5e-50 203.8 178 58.4
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.3e-50 202.6 185 60.0
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.8e-49 199.5 139 69.8
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.6e-47 191.4 177 58.2
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.2e-44 184.1 137 67.9
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 6.0e-44 181.8 129 70.5
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.3e-43 180.6 182 52.7
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.3e-43 180.6 112 76.8
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.5e-42 177.2 112 74.1
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 3.3e-42 176.0 176 56.2
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 4.3e-42 175.6 109 75.2
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 7.4e-42 174.9 117 71.8
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.0e-40 169.1 177 52.5
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 4.9e-38 162.2 175 51.4
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 4.9e-38 162.2 118 69.5
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.1e-37 161.0 135 61.5
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.1e-37 161.0 135 61.5
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.3e-35 154.1 185 48.1
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.9e-35 152.5 101 74.3
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 5.1e-35 152.1 112 71.4
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.7e-33 146.0 163 50.9
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.4e-32 144.1 79 94.9
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 8.4e-30 134.8 171 42.7
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 2.7e-28 129.8 79 77.2
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 5.1e-27 125.6 77 77.9
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 3.3e-26 122.9 170 45.9
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.7e-25 119.4 182 40.7
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.4e-23 112.8 66 80.3
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.9e-19 99.4 172 33.7
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.1e-18 97.8 180 34.4
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.1e-18 97.8 98 58.2
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.7e-17 94.0 64 67.2
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 6.5e-14 82.0 60 61.7
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.4e-13 80.9 143 37.8
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 2.0e-10 70.5 62 61.3
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 5.7e-10 68.9 99 41.4
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.3e-09 67.8 50 68.0
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.0e-06 58.2 44 61.4


User provided reference genes

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