Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.7e-84 316.2 189 100.0
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.5e-64 249.2 328 57.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 6.8e-62 241.1 328 56.1
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 2.2e-60 236.1 328 54.9
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 3.4e-37 159.1 114 94.7
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 3.2e-35 152.5 79 97.5
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 3.2e-35 152.5 79 97.5
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 9.3e-35 151.0 144 77.8
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 6.0e-34 148.3 320 38.8
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 8.7e-33 144.4 79 94.9
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 3.5e-26 122.5 213 34.7
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.8e-25 120.2 244 33.6
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.3e-25 119.8 246 33.7
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 5.1e-25 118.6 242 34.3
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 8.7e-25 117.9 245 32.2
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 8.7e-25 117.9 246 33.7
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.5e-24 116.3 248 32.3
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 2.5e-24 116.3 245 33.1
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 4.3e-24 115.5 245 33.1
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 4.3e-24 115.5 250 32.0
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 4.3e-24 115.5 250 32.0
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 5.6e-24 115.2 242 33.1
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 7.4e-24 114.8 219 33.3
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.3e-23 114.0 242 33.1
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.6e-23 113.6 237 32.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.6e-23 113.6 245 33.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 2.1e-23 113.2 248 31.0
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 2.1e-23 113.2 249 32.1
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.1e-23 113.2 247 31.2
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.8e-23 112.8 245 31.8
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 2.8e-23 112.8 242 33.1
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.8e-23 112.8 247 30.8
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 3.7e-23 112.5 246 30.9
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 3.7e-23 112.5 242 32.2
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 3.7e-23 112.5 245 31.8
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 6.2e-23 111.7 244 32.8
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 6.2e-23 111.7 89 58.4
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 6.2e-23 111.7 247 31.6
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 8.1e-23 111.3 63 81.0
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.4e-22 110.5 242 32.2
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.4e-22 110.5 247 30.8
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.4e-22 110.5 243 32.1
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.4e-22 109.8 244 31.1
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.4e-22 109.8 245 30.2
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.4e-22 109.8 245 30.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.4e-22 109.8 245 30.2
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 2.4e-22 109.8 63 79.4
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 3.1e-22 109.4 242 31.4
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 3.1e-22 109.4 248 29.8
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 4.0e-22 109.0 66 72.7
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.3e-22 108.6 248 30.2
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 5.3e-22 108.6 244 30.7
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 5.3e-22 108.6 242 32.2
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 6.9e-22 108.2 244 31.6
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 6.9e-22 108.2 66 71.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 9.0e-22 107.8 247 30.8
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.2e-21 107.5 63 79.4
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.2e-21 107.5 245 30.2
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.2e-21 107.5 64 75.0
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.5e-21 107.1 245 30.2
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.5e-21 107.1 251 30.3
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.4e-21 105.9 72 66.7
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.4e-21 105.9 275 30.2
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 4.5e-21 105.5 245 29.4
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.5e-21 105.5 66 71.2
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 4.5e-21 105.5 66 71.2
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 4.5e-21 105.5 63 74.6
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.5e-21 105.5 72 66.7
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 4.5e-21 105.5 66 69.7
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.5e-21 105.5 65 67.7
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 5.8e-21 105.1 248 30.2
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 7.6e-21 104.8 63 73.0
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 7.6e-21 104.8 66 68.2
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 7.6e-21 104.8 66 68.2
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 9.9e-21 104.4 247 28.7
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 9.9e-21 104.4 242 30.2
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 9.9e-21 104.4 63 73.0
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 9.9e-21 104.4 63 73.0
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.3e-20 104.0 63 71.4
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 1.3e-20 104.0 64 73.4
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.2e-20 103.2 66 69.7
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.2e-20 103.2 63 73.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.9e-20 102.8 60 76.7
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.9e-20 102.8 247 28.3
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 2.9e-20 102.8 62 72.6
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 2.9e-20 102.8 247 28.7
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 2.9e-20 102.8 245 29.8
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.8e-20 102.4 64 70.3
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 3.8e-20 102.4 69 62.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.8e-20 102.4 241 30.3
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 3.8e-20 102.4 245 28.6
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 3.8e-20 102.4 247 30.0
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 4.9e-20 102.1 64 68.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 4.9e-20 102.1 66 66.7
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 6.4e-20 101.7 241 30.3
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 6.4e-20 101.7 66 66.7
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 8.4e-20 101.3 66 66.7
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 8.4e-20 101.3 65 66.2
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.4e-19 100.5 245 29.0
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.4e-19 100.5 245 28.2
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.4e-19 100.5 63 65.1
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.9e-19 100.1 246 28.9
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.9e-19 100.1 63 66.7
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.9e-19 100.1 247 27.9
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.5e-19 99.8 64 70.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.2e-19 99.4 64 67.2
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.2e-19 99.4 229 30.6
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 4.2e-19 99.0 63 66.7
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 4.2e-19 99.0 247 28.7
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 4.2e-19 99.0 244 28.3
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.2e-19 99.0 66 63.6
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.2e-19 99.0 64 65.6
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.2e-19 99.0 64 65.6
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.2e-19 99.0 64 65.6
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 5.5e-19 98.6 212 31.6
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 5.5e-19 98.6 63 65.1
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.6e-18 97.1 63 63.5
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.6e-18 97.1 59 71.2
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.7e-18 96.3 63 66.7
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 3.5e-18 95.9 159 35.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 6.0e-18 95.1 63 65.1
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.8e-17 93.6 66 60.6
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.3e-17 93.2 64 64.1
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.0e-17 92.8 60 65.0
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.9e-16 90.1 66 56.1
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.5e-16 89.7 62 61.3
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 4.3e-16 89.0 81 50.6
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 4.3e-16 89.0 81 50.6
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 4.3e-16 89.0 81 50.6
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 4.3e-16 89.0 81 50.6
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 7.4e-16 88.2 58 67.2
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 4.8e-15 85.5 94 46.8
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.8e-14 83.6 84 51.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 2.4e-14 83.2 244 25.8
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 5.8e-13 78.6 48 66.7
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 3.8e-12 75.9 66 50.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.0e-09 66.2 75 49.3
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 3.9e-09 65.9 69 42.0
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 4.3e-08 62.4 77 44.2
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 9.7e-08 61.2 58 46.6
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 9.7e-08 61.2 74 43.2
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 9.7e-08 61.2 77 42.9
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.6e-07 60.5 71 42.3
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 3.7e-07 59.3 76 44.7
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.1e-06 56.2 73 41.1
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.9e-06 55.1 215 24.7


User provided reference genes

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