Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 3.6e-277 957.6 473 100.0
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 6.1e-253 877.1 480 89.8
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 4.7e-221 771.2 484 81.2
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 6.2e-221 770.8 484 81.0
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.5e-219 766.1 484 80.6
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 2.0e-219 765.8 484 80.4
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 2.2e-218 762.3 484 80.4
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 6.4e-218 760.8 486 78.4
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 1.2e-216 756.5 483 79.1
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 1.6e-216 756.1 486 78.6
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 4.6e-216 754.6 468 79.9
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 2.3e-215 752.3 483 79.5
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 3.0e-215 751.9 482 76.6
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 8.6e-215 750.4 485 78.6
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 2.5e-214 748.8 485 78.6
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 2.5e-214 748.8 482 77.2
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 4.3e-214 748.0 484 77.9
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 5.6e-214 747.7 484 78.5
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 7.3e-214 747.3 484 77.3
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 7.3e-214 747.3 485 77.7
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 7.3e-214 747.3 484 77.9
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.2e-213 746.5 485 76.7
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 2.1e-213 745.7 484 77.1
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 3.6e-213 745.0 484 76.4
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 3.6e-213 745.0 483 76.4
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 6.2e-213 744.2 481 78.4
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 8.1e-213 743.8 481 76.5
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 8.1e-213 743.8 488 77.7
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 8.1e-213 743.8 481 78.0
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.4e-212 743.0 481 78.6
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.4e-212 743.0 481 78.6
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 1.4e-212 743.0 486 76.5
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.4e-212 743.0 449 81.3
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.8e-212 742.7 482 78.0
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 2.4e-212 742.3 481 76.9
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 2.4e-212 742.3 441 81.9
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 3.1e-212 741.9 481 77.8
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.0e-212 741.5 463 79.3
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 6.9e-212 740.7 485 76.3
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 1.5e-211 739.6 484 76.2
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 2.0e-211 739.2 485 77.7
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 2.6e-211 738.8 480 75.8
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.6e-211 738.8 481 77.8
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 3.4e-211 738.4 476 76.9
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 4.4e-211 738.0 484 77.1
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 4.4e-211 738.0 444 81.5
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 5.8e-211 737.6 483 76.8
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 7.6e-211 737.3 482 76.6
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 9.9e-211 736.9 481 76.9
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 2.2e-210 735.7 480 76.7
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 2.2e-210 735.7 444 80.4
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.9e-210 735.3 484 76.4
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 2.9e-210 735.3 484 77.1
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 3.8e-210 734.9 486 76.5
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 4.9e-210 734.6 482 77.0
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 4.9e-210 734.6 481 77.1
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 6.4e-210 734.2 484 76.9
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 8.4e-210 733.8 420 84.5
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 8.4e-210 733.8 485 76.3
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 2.4e-209 732.3 476 77.1
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 3.2e-209 731.9 482 75.5
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 4.2e-209 731.5 482 76.1
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 4.2e-209 731.5 445 79.3
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 7.1e-209 730.7 443 80.4
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 1.6e-208 729.6 481 75.5
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 1.6e-208 729.6 486 75.5
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 2.7e-208 728.8 467 77.9
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.5e-208 728.4 484 76.2
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 6.0e-208 727.6 484 76.0
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 7.8e-208 727.2 482 75.5
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 7.8e-208 727.2 484 76.0
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 7.8e-208 727.2 484 76.0
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 1.0e-207 726.9 480 75.6
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.3e-207 726.5 441 80.0
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 1.3e-207 726.5 490 74.3
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 1.7e-207 726.1 480 74.6
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 2.3e-207 725.7 479 74.5
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 3.0e-207 725.3 480 74.4
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 3.9e-207 724.9 479 75.2
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 6.6e-207 724.2 393 86.8
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 6.6e-207 724.2 482 75.5
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 8.7e-207 723.8 447 79.6
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.1e-206 723.4 484 75.4
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.1e-206 723.4 484 75.4
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 1.5e-206 723.0 490 74.1
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 2.5e-206 722.2 396 85.9
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 2.5e-206 722.2 440 80.5
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 3.3e-206 721.8 396 85.9
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 3.3e-206 721.8 474 77.4
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 4.3e-206 721.5 448 79.9
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 1.3e-205 719.9 480 73.1
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 1.6e-205 719.5 397 85.4
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 2.1e-205 719.2 397 85.6
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 2.1e-205 719.2 397 85.1
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 4.8e-205 718.0 394 85.8
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 1.1e-204 716.8 472 74.8
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 2.4e-204 715.7 514 71.6
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 2.0e-203 712.6 389 86.4
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 6.2e-197 691.0 427 75.6
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 4.9e-194 681.4 391 83.6
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 4.2e-193 678.3 408 77.9
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 1.6e-192 676.4 398 80.7
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 1.8e-191 672.9 429 75.3
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 1.5e-190 669.8 486 70.2
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 1.4e-188 663.3 389 79.2
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 2.9e-186 655.6 397 79.3
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 7.4e-174 614.4 396 73.2
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 5.7e-166 588.2 395 73.9
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 7.4e-166 587.8 406 66.0
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 6.9e-164 581.3 389 67.6
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.2e-163 580.5 431 70.5
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 1.5e-163 580.1 384 76.8
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 1.8e-151 540.0 289 89.6
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 4.0e-151 538.9 286 89.5
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 5.5e-137 491.9 297 78.5
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.1e-132 477.6 326 73.6
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 8.9e-103 378.3 237 77.6
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.6e-96 357.5 194 86.1
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 6.0e-83 312.4 174 83.9
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.0e-61 239.6 196 62.2
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 3.9e-58 229.9 136 80.9
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.3e-56 224.9 132 82.6
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 6.3e-56 222.6 130 80.8
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 2.6e-46 190.7 140 72.1
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 5.2e-34 149.8 94 78.7
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 1.4e-31 141.7 158 53.2
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 2.2e-29 134.4 105 63.8
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 2.9e-13 80.9 59 64.4
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 2.3e-10 71.2 286 26.9
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 2.3e-10 71.2 284 25.7
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 2.4e-07 61.2 155 29.7
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 3.2e-07 60.8 167 29.3
Pp3c14_11550 Physcomitrium patens HOM05D000776 ORTHO05D002281 5.4e-07 60.1 151 31.8
TPR.G12967 Trifolium pratense HOM05D000776 ORTHO05D001624 5.4e-07 60.1 165 28.5
PSO782G1764 Papaver somniferum HOM05D000776 ORTHO05D001624 9.2e-07 59.3 173 28.3
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 1.2e-06 58.9 171 26.9
PSO478G2983 Papaver somniferum HOM05D000776 ORTHO05D001624 1.2e-06 58.9 173 27.7
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 3.5e-06 57.4 154 27.3
FAN08G0150 Fragaria x ananassa HOM05D000776 ORTHO05D001624 4.6e-06 57.0 169 27.8
Lalb_Chr05g0224991 Lupinus albus HOM05D000776 ORTHO05D001624 4.6e-06 57.0 159 27.0


User provided reference genes

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