Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 4.0e-73 278.1 152 100.0
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 8.5e-31 137.5 152 59.2
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 1.1e-22 110.5 90 67.8
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 2.5e-22 109.4 106 60.4
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 3.2e-22 109.0 96 64.6
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 4.2e-22 108.6 126 57.1
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 4.2e-22 108.6 86 69.8
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 4.2e-22 108.6 86 69.8
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 7.2e-22 107.8 93 63.4
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 7.2e-22 107.8 93 63.4
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 1.2e-21 107.1 100 63.0
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 1.2e-21 107.1 105 62.9
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 1.6e-21 106.7 95 64.2
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 1.6e-21 106.7 90 65.6
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 1.6e-21 106.7 96 62.5
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 2.1e-21 106.3 105 62.9
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 2.8e-21 105.9 105 60.0
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 3.6e-21 105.5 105 61.9
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 3.6e-21 105.5 131 50.4
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 3.6e-21 105.5 96 61.5
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 4.7e-21 105.1 91 63.7
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 6.1e-21 104.8 83 67.5
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 6.1e-21 104.8 90 64.4
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 8.0e-21 104.4 91 64.8
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 8.0e-21 104.4 125 51.2
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 1.0e-20 104.0 97 61.9
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.0e-20 104.0 97 60.8
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 1.4e-20 103.6 131 50.4
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 1.4e-20 103.6 131 50.4
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 1.4e-20 103.6 91 63.7
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 1.4e-20 103.6 96 61.5
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 1.8e-20 103.2 96 61.5
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 2.3e-20 102.8 93 61.3
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 2.3e-20 102.8 91 63.7
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 2.3e-20 102.8 141 47.5
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 2.3e-20 102.8 86 67.4
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 2.3e-20 102.8 109 58.7
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 3.0e-20 102.4 170 47.1
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 5.2e-20 101.7 109 58.7
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 6.8e-20 101.3 134 50.0
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 6.8e-20 101.3 88 63.6
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 8.8e-20 100.9 93 60.2
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 8.8e-20 100.9 96 58.3
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 1.2e-19 100.5 95 60.0
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 1.2e-19 100.5 96 60.4
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 1.5e-19 100.1 83 65.1
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 1.5e-19 100.1 83 65.1
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 1.5e-19 100.1 95 62.1
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.5e-19 100.1 95 62.1
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.5e-19 100.1 95 62.1
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.5e-19 100.1 95 62.1
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.5e-19 100.1 95 62.1
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 1.5e-19 100.1 95 61.1
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 1.5e-19 100.1 86 64.0
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.0e-19 99.8 82 65.9
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.0e-19 99.8 82 65.9
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 2.0e-19 99.8 86 62.8
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 2.6e-19 99.4 96 62.5
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 2.6e-19 99.4 90 61.1
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 2.6e-19 99.4 91 61.5
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 3.4e-19 99.0 122 53.3
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 3.4e-19 99.0 96 59.4
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 3.4e-19 99.0 104 59.6
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 4.4e-19 98.6 91 61.5
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 4.4e-19 98.6 92 57.6
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 4.4e-19 98.6 87 63.2
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 4.4e-19 98.6 107 56.1
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 4.4e-19 98.6 86 61.6
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 5.7e-19 98.2 81 65.4
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 5.7e-19 98.2 98 58.2
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 7.5e-19 97.8 98 56.1
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 7.5e-19 97.8 98 56.1
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 7.5e-19 97.8 98 56.1
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 7.5e-19 97.8 140 46.4
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 7.5e-19 97.8 87 64.4
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 9.8e-19 97.4 88 61.4
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 9.8e-19 97.4 88 59.1
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 9.8e-19 97.4 88 60.2
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.3e-18 97.1 162 45.7
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 1.3e-18 97.1 86 64.0
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.3e-18 97.1 116 51.7
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 2.2e-18 96.3 91 60.4
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 2.2e-18 96.3 91 60.4
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 2.8e-18 95.9 88 59.1
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 2.8e-18 95.9 109 51.4
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 3.7e-18 95.5 156 43.6
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 3.7e-18 95.5 156 43.6
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 3.7e-18 95.5 84 64.3
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 4.9e-18 95.1 86 62.8
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 4.9e-18 95.1 105 54.3
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 4.9e-18 95.1 152 44.1
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 4.9e-18 95.1 83 62.7
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 6.3e-18 94.7 163 43.6
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 6.3e-18 94.7 116 50.9
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 8.3e-18 94.4 160 44.4
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 1.1e-17 94.0 144 45.8
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 1.1e-17 94.0 89 60.7
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 1.8e-17 93.2 97 52.6
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 2.4e-17 92.8 89 59.6
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 2.4e-17 92.8 104 51.9
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 2.4e-17 92.8 82 61.0
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 3.1e-17 92.4 89 59.6
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 7.0e-17 91.3 89 58.4
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 2.0e-16 89.7 161 42.2
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 2.7e-16 89.4 160 40.6
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 2.7e-16 89.4 161 42.2
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.0e-15 87.4 160 42.5
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 6.6e-15 84.7 81 55.6
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 1.5e-14 83.6 90 56.7
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 5.6e-14 81.6 131 42.7
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 8.0e-13 77.8 146 39.7
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 1.4e-12 77.0 115 42.6
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 5.2e-12 75.1 157 40.1
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 1.3e-10 70.5 64 60.9
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 7.0e-09 64.7 83 47.0
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.0e-07 59.3 83 44.6
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 9.5e-06 54.3 78 47.4


User provided reference genes

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