Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 2.0e-133 479.2 253 100.0
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 3.5e-98 362.1 255 74.5
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 7.9e-74 281.2 193 70.5
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 1.8e-73 280.0 258 58.1
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 1.5e-72 276.9 261 55.9
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 3.3e-72 275.8 186 69.9
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 5.7e-72 275.0 242 57.4
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 7.4e-72 274.6 186 69.4
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 1.3e-71 273.9 186 68.8
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 1.3e-71 273.9 254 57.1
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 1.7e-71 273.5 255 55.3
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 1.1e-70 270.8 186 67.7
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 1.4e-70 270.4 246 56.1
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 1.8e-70 270.0 256 55.9
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 1.8e-70 270.0 266 54.5
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 1.8e-70 270.0 262 55.0
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 3.1e-70 269.2 183 69.9
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 4.1e-70 268.9 179 69.3
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 4.1e-70 268.9 255 52.9
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 4.1e-70 268.9 267 54.3
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 4.1e-70 268.9 236 56.4
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 1.2e-69 267.3 252 54.4
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 1.2e-69 267.3 172 72.1
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 2.0e-69 266.5 186 67.2
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 2.0e-69 266.5 245 55.5
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 2.6e-69 266.2 239 57.7
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.6e-69 266.2 261 55.6
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 3.5e-69 265.8 180 68.3
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 3.5e-69 265.8 172 71.5
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 4.5e-69 265.4 226 60.6
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 4.5e-69 265.4 246 56.1
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 4.5e-69 265.4 172 72.1
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 5.9e-69 265.0 262 53.1
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 5.9e-69 265.0 177 70.6
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 7.7e-69 264.6 172 71.5
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 1.0e-68 264.2 187 66.8
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 1.7e-68 263.5 177 70.1
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 2.2e-68 263.1 251 55.8
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 2.2e-68 263.1 182 67.0
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 3.8e-68 262.3 251 53.4
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 1.1e-67 260.8 188 65.4
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 1.1e-67 260.8 265 53.2
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.5e-67 260.4 244 52.5
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 3.2e-67 259.2 261 52.5
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 3.2e-67 259.2 182 64.8
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 3.2e-67 259.2 244 52.5
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 3.2e-67 259.2 179 68.7
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 5.5e-67 258.5 200 63.0
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 9.4e-67 257.7 244 52.0
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 1.2e-66 257.3 172 69.2
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 1.2e-66 257.3 248 54.0
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.7e-66 256.1 247 53.8
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 2.7e-66 256.1 247 53.8
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 4.7e-66 255.4 187 64.2
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 1.4e-65 253.8 188 62.2
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 2.3e-65 253.1 181 65.2
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 4.0e-65 252.3 225 58.2
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 4.0e-65 252.3 177 65.0
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 4.0e-65 252.3 254 53.5
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 5.2e-65 251.9 187 63.6
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 8.8e-65 251.1 188 63.8
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 8.8e-65 251.1 177 64.4
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 8.8e-65 251.1 207 58.9
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 2.6e-64 249.6 246 55.3
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 5.7e-64 248.4 181 66.3
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 5.7e-64 248.4 181 65.7
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 7.5e-64 248.1 259 51.7
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 9.7e-64 247.7 183 65.6
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 9.7e-64 247.7 183 65.0
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 1.3e-63 247.3 258 52.7
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 2.2e-63 246.5 183 63.9
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 2.2e-63 246.5 247 53.0
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 6.3e-63 245.0 177 65.5
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 1.1e-62 244.2 227 53.7
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 1.1e-62 244.2 160 68.1
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 1.4e-62 243.8 254 50.8
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 1.4e-62 243.8 182 61.5
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 1.8e-62 243.4 182 61.5
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.4e-62 243.0 302 48.0
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 1.6e-61 240.4 177 65.0
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 3.5e-61 239.2 174 64.4
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 1.7e-60 236.9 193 62.7
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 2.2e-60 236.5 248 51.2
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 2.9e-60 236.1 195 62.1
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 2.9e-60 236.1 195 62.1
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 3.8e-60 235.7 177 62.7
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 5.0e-60 235.3 187 62.6
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 5.0e-60 235.3 182 62.6
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 1.9e-59 233.4 259 47.9
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 1.2e-58 230.7 177 61.0
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 2.1e-58 229.9 182 57.7
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 4.7e-58 228.8 186 57.5
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 1.4e-57 227.3 180 60.6
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 2.3e-57 226.5 193 59.6
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 5.7e-56 221.9 143 72.7
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.4e-54 217.2 151 66.2
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 1.8e-54 216.9 143 69.9
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 5.4e-54 215.3 230 50.0
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 4.5e-53 212.2 180 55.6
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 7.7e-53 211.5 185 54.6
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 1.1e-51 207.6 211 53.1
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 8.9e-49 198.0 170 60.0
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 9.8e-48 194.5 136 65.4
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 8.6e-44 181.4 186 46.8
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 1.0e-41 174.5 124 66.1
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 4.0e-41 172.6 166 48.2
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 4.9e-39 165.6 184 44.6
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 2.0e-37 160.2 109 67.9
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 2.0e-37 160.2 162 46.3
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 1.5e-35 154.1 170 45.9
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 3.1e-33 146.4 93 74.2
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.2e-32 144.4 251 39.0
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 1.6e-29 134.0 94 63.8
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 2.7e-29 133.3 99 61.6
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 6.6e-28 128.6 91 62.6
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 5.8e-24 115.5 94 61.7
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 4.3e-19 99.4 148 43.2
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 7.3e-19 98.6 68 63.2
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 5.8e-16 89.0 202 30.2
MCO13G061 Micromonas commoda HOM05D006710 ORTHO05D008353 2.2e-15 87.0 120 38.3
Cre13.g564050 Chlamydomonas reinhardtii HOM05D006710 ORTHO05D008353 6.2e-10 68.9 187 26.2


User provided reference genes

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