Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb346590 Zea mays HOM05D002674 ORTHO05D008041 7.6e-50 200.3 108 100.0
Os05g0363600 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D008041 1.4e-43 179.5 107 90.7
CANSAT25G0502 Cannabis sativa HOM05D002674 ORTHO05D008041 8.5e-25 117.1 103 62.1
Actinidia32214 Actinidia chinensis HOM05D002674 ORTHO05D008041 1.9e-24 115.9 102 61.8
Nitab4.5_0001879g0010 Nicotiana tabacum HOM05D002674 ORTHO05D008041 4.2e-24 114.8 102 60.8
Nitab4.5_0008207g0030 Nicotiana tabacum HOM05D002674 ORTHO05D008041 4.2e-24 114.8 102 60.8
Peaxi162Scf00001g00445 Petunia axillaris HOM05D002674 ORTHO05D008041 4.2e-24 114.8 102 60.8
QL12p028510 Quercus lobata HOM05D002674 ORTHO05D008041 7.2e-24 114.0 103 62.1
unitig_61.g26303 Utricularia gibba HOM05D002674 ORTHO05D008041 3.6e-23 111.7 101 59.4
Aqoxy5G00753 Aquilegia oxysepala HOM05D002674 ORTHO05D008041 1.4e-22 109.8 102 57.8
CAN.G472.1 Capsicum annuum HOM05D002674 ORTHO05D008041 1.4e-22 109.8 102 57.8
PGSC0003DMG400011376 Solanum tuberosum HOM05D002674 ORTHO05D008041 1.8e-22 109.4 102 56.9
MSTRG.21632 Avicennia marina HOM05D002674 ORTHO05D008041 2.3e-22 109.0 102 58.8
Oeu048338.1 Olea europaea HOM05D002674 ORTHO05D008041 2.3e-22 109.0 102 59.8
SalBow3G0298 Salvia bowleyana HOM05D002674 ORTHO05D008041 2.3e-22 109.0 96 59.4
Solyc09g075100.3 Solanum lycopersicum HOM05D002674 ORTHO05D008041 2.3e-22 109.0 102 56.9
Sopen09g029920 Solanum pennellii HOM05D002674 ORTHO05D008041 2.3e-22 109.0 102 56.9
SGA_v2.0_scaffold2G01395 Striga asiatica HOM05D002674 ORTHO05D008041 3.9e-22 108.2 101 58.4
arahy.Tifrunner.gnm1.ann1.9NAT9F Arachis hypogaea HOM05D002674 ORTHO05D008041 6.7e-22 107.5 109 56.0
arahy.Tifrunner.gnm1.ann1.UV7MYU Arachis hypogaea HOM05D002674 ORTHO05D008041 6.7e-22 107.5 109 56.0
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 8.8e-22 107.1 102 57.8
FvH4_3g17380 Fragaria vesca HOM05D002674 ORTHO05D008041 8.8e-22 107.1 105 55.2
FAN11G2206 Fragaria x ananassa HOM05D002674 ORTHO05D008041 8.8e-22 107.1 105 55.2
Dinv19696 Davidia involucrata HOM05D002674 ORTHO05D008041 1.1e-21 106.7 105 57.1
MELO3C017957.2 Cucumis melo HOM05D002674 ORTHO05D008041 2.0e-21 105.9 103 56.3
FvH4_2g25692 Fragaria vesca HOM05D002674 ORTHO05D008041 2.0e-21 105.9 103 57.3
FAN16G1943 Fragaria x ananassa HOM05D002674 ORTHO05D008041 2.6e-21 105.5 105 54.3
FAN25G1445 Fragaria x ananassa HOM05D002674 ORTHO05D008041 2.6e-21 105.5 105 55.2
CSS0018179 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D008041 4.4e-21 104.8 102 54.9
Nn3g21482 Nelumbo nucifera HOM05D002674 ORTHO05D008041 4.4e-21 104.8 101 55.4
CiPaw.07G108500 Carya illinoinensis HOM05D002674 ORTHO05D008041 5.7e-21 104.4 101 58.4
Lalb_Chr21g0306851 Lupinus albus HOM05D002674 ORTHO05D008041 5.7e-21 104.4 101 56.4
ClCG10G010910 Citrullus lanatus HOM05D002674 ORTHO05D008041 7.4e-21 104.0 100 56.0
Eucgr.H01115 Eucalyptus grandis HOM05D002674 ORTHO05D008041 7.4e-21 104.0 98 59.2
FAN21G2416 Fragaria x ananassa HOM05D002674 ORTHO05D008041 7.4e-21 104.0 105 54.3
CsaV3_4G000790 Cucumis sativus L. HOM05D002674 ORTHO05D008041 9.7e-21 103.6 103 55.3
RcHm_v2.0_Chr6g0293971 Rosa chinensis HOM05D002674 ORTHO05D008041 9.7e-21 103.6 103 56.3
TAR636G2182 Trochodendron aralioides HOM05D002674 ORTHO05D008041 9.7e-21 103.6 102 54.9
Sed0019690 Sechium edule HOM05D002674 ORTHO05D008041 1.3e-20 103.2 103 54.4
Glyma.10G018500 Glycine max HOM05D002674 ORTHO05D008041 1.7e-20 102.8 99 54.5
Gohir.D08G085400 Gossypium hirsutum HOM05D002674 ORTHO05D008041 1.7e-20 102.8 100 56.0
Lj5g0008305 Lotus japonicus HOM05D002674 ORTHO05D008041 1.7e-20 102.8 104 52.9
Potri.014G129800 Populus trichocarpa HOM05D002674 ORTHO05D008041 1.7e-20 102.8 105 53.3
Cpa.g.sc9.264 Carica papaya HOM05D002674 ORTHO05D008041 2.2e-20 102.4 103 56.3
Ciclev10022953m.g Citrus clementina HOM05D002674 ORTHO05D008041 2.2e-20 102.4 105 55.2
Cc01_g20820 Coffea canephora HOM05D002674 ORTHO05D008041 2.2e-20 102.4 108 54.6
Haze_04934 Corylus avellana HOM05D002674 ORTHO05D008041 2.2e-20 102.4 101 56.4
Sabra02G0154500 Salix brachista HOM05D002674 ORTHO05D008041 2.2e-20 102.4 105 53.3
GSVIVG01028011001 Vitis vinifera HOM05D002674 ORTHO05D008041 2.2e-20 102.4 98 57.1
EL10Ac7g17468 Beta vulgaris HOM05D002674 ORTHO05D008041 2.8e-20 102.1 101 57.4
Psat6g166360 Pisum sativum HOM05D002674 ORTHO05D008041 2.8e-20 102.1 101 56.4
Gohir.A08G076000 Gossypium hirsutum HOM05D002674 ORTHO05D008041 4.8e-20 101.3 100 54.0
Phvul.007G146200 Phaseolus vulgaris HOM05D002674 ORTHO05D008041 6.3e-20 100.9 104 54.8
TWI14G1447 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 6.3e-20 100.9 100 55.0
Ca_10338_v3 Cicer arietinum L. HOM05D002674 ORTHO05D008041 8.2e-20 100.5 99 55.6
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 1.1e-19 100.1 100 54.0
Migut.D00216 Erythranthe guttata HOM05D002674 ORTHO05D008041 1.4e-19 99.8 98 56.1
Prupe.8G261100 Prunus persica HOM05D002674 ORTHO05D008041 1.4e-19 99.8 103 57.3
Hund18156 Selenicereus undatus HOM05D002674 ORTHO05D008041 1.8e-19 99.4 103 55.3
VMungo0720G1979 Vigna mungo HOM05D002674 ORTHO05D008041 1.8e-19 99.4 104 53.8
Atru.chr5.1150 Acer truncatum HOM05D002674 ORTHO05D008041 2.4e-19 99.0 100 54.0
MD11G1310400 Malus domestica HOM05D002674 ORTHO05D008041 2.4e-19 99.0 101 55.4
Rhsim13G0010400 Rhododendron simsii HOM05D002674 ORTHO05D008041 2.4e-19 99.0 118 51.7
Cfa005915 Carpinus fangiana HOM05D002674 ORTHO05D008041 3.1e-19 98.6 101 54.5
Carub.0005s2947 Capsella rubella HOM05D002674 ORTHO05D008041 4.1e-19 98.2 100 56.0
PGR119G0614 Punica granatum HOM05D002674 ORTHO05D008041 4.1e-19 98.2 98 56.1
Thecc.01G300000 Theobroma cacao HOM05D002674 ORTHO05D008041 4.1e-19 98.2 100 54.0
COL.COLO4_23349 Corchorus olitorius HOM05D002674 ORTHO05D008041 6.9e-19 97.4 100 53.0
Medtr1g088550 Medicago truncatula HOM05D002674 ORTHO05D008041 6.9e-19 97.4 99 54.5
Atru.chr7.1564 Acer truncatum HOM05D002674 ORTHO05D008041 9.1e-19 97.1 100 54.0
AUR62033146 Chenopodium quinoa HOM05D002674 ORTHO05D008041 9.1e-19 97.1 100 53.0
Thhalv10006327m.g Eutrema salsugineum HOM05D002674 ORTHO05D008041 9.1e-19 97.1 98 57.1
AL5G45590 Arabidopsis lyrata HOM05D002674 ORTHO05D008041 1.2e-18 96.7 100 56.0
CDE12G0521 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 1.2e-18 96.7 100 54.0
BcaC07g42733 Brassica carinata HOM05D002674 ORTHO05D008041 1.5e-18 96.3 98 56.1
C04p30420 Brassica napus HOM05D002674 ORTHO05D008041 2.6e-18 95.5 100 55.0
Sp5g00710 Schrenkiella parvula HOM05D002674 ORTHO05D008041 2.6e-18 95.5 100 55.0
AT3G62810 Arabidopsis thaliana HOM05D002674 ORTHO05D008041 3.4e-18 95.1 100 54.0
BcaC02g10314 Brassica carinata HOM05D002674 ORTHO05D008041 3.4e-18 95.1 100 55.0
A04p00510 Brassica napus HOM05D002674 ORTHO05D008041 3.4e-18 95.1 100 55.0
BolC4t24576H Brassica oleracea HOM05D002674 ORTHO05D008041 3.4e-18 95.1 100 55.0
BraA04t15771Z Brassica rapa HOM05D002674 ORTHO05D008041 3.4e-18 95.1 100 55.0
ECA247G1692 Erigeron canadensis HOM05D002674 ORTHO05D008041 5.9e-18 94.4 100 52.0
ATR0796G030 Amborella trichopoda HOM05D002674 ORTHO05D008041 7.7e-18 94.0 100 51.0
HanXRQChr15g0465661 Helianthus annuus HOM05D002674 ORTHO05D008041 1.0e-17 93.6 102 51.0
MBI19_g25355_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D008041 1.0e-17 93.6 101 50.5
AUR62008625 Chenopodium quinoa HOM05D002674 ORTHO05D008041 1.7e-17 92.8 100 50.0
Manes.01G218700 Manihot esculenta HOM05D002674 ORTHO05D008041 2.2e-17 92.4 100 52.0
Aa31LG10G16570 Aethionema arabicum HOM05D002674 ORTHO05D008041 2.9e-17 92.0 100 54.0
TPR.G34008 Trifolium pratense HOM05D002674 ORTHO05D008041 3.8e-17 91.7 99 51.5
TWI23G1311 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 6.5e-17 90.9 100 50.0
MD03G1287900 Malus domestica HOM05D002674 ORTHO05D008041 8.5e-17 90.5 100 53.0
CARHR173080 Cardamine hirsuta HOM05D002674 ORTHO05D008041 1.1e-16 90.1 101 52.5
PSO210G6076 Papaver somniferum HOM05D002674 ORTHO05D008041 1.4e-16 89.7 105 49.5
BcaB02g08097 Brassica carinata HOM05D002674 ORTHO05D008041 2.5e-16 89.0 103 52.4
BraA09t40877Z Brassica rapa HOM05D002674 ORTHO05D008041 3.2e-16 88.6 98 53.1
PSO832G1306 Papaver somniferum HOM05D002674 ORTHO05D008041 3.2e-16 88.6 105 49.5
PGR044G1069 Punica granatum HOM05D002674 ORTHO05D008041 4.2e-16 88.2 95 53.7
A09p54660 Brassica napus HOM05D002674 ORTHO05D008041 2.1e-15 85.9 98 52.0
HPP92_013721 Vanilla planifolia HOM05D002674 ORTHO05D008041 3.6e-15 85.1 174 33.9
Lalb_Chr02g0143261 Lupinus albus HOM05D000266 ORTHO05D008041 4.7e-15 84.7 83 55.4
vmacro02452 Vaccinium macrocarpon HOM05D002674 ORTHO05D008041 4.7e-15 84.7 155 41.3
SEGI_38702 Sequoiadendron giganteum HOM05D002674 ORTHO05D008041 8.0e-15 84.0 98 44.9
Sabra14G0096400 Salix brachista HOM05D002674 ORTHO05D008041 8.8e-14 80.5 106 44.3
SalBow3G1515 Salvia bowleyana HOM05D002674 ORTHO05D008041 1.5e-13 79.7 79 53.2
SalBow5G2922 Salvia bowleyana HOM05D002674 ORTHO05D008041 5.7e-13 77.8 77 54.5
Haze_04957 Corylus avellana HOM05D002674 ORTHO05D008041 6.3e-12 74.3 80 53.8
Duzib138G1033 Durio zibethinus HOM05D002674 ORTHO05D008041 8.2e-12 73.9 77 51.9
Oeu010670.1 Olea europaea HOM05D002674 ORTHO05D008041 1.8e-11 72.8 102 48.0
Gorai.004G089900 Gossypium raimondii HOM05D002674 ORTHO05D008041 3.1e-11 72.0 77 51.9
DCAR_002831 Daucus carota HOM05D000067 ORTHO05D001807 4.1e-11 71.6 79 51.9
Hma1.2p1_0491F.1_g164520 Hydrangea macrophylla HOM05D002674 ORTHO05D008041 5.3e-11 71.2 76 51.3
Sc24g0003780 Simmondsia chinensis HOM05D002674 ORTHO05D008041 7.0e-11 70.9 80 53.8
Lsat_1_v5_gn_9_5640 Lactuca sativa HOM05D002674 ORTHO05D008643 1.2e-10 70.1 80 48.8
Glyma.02G018200 Glycine max HOM05D002674 ORTHO05D008041 3.5e-10 68.6 81 46.9
CDE01G0164 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 7.7e-10 67.4 80 50.0
Ah.15g093210 Amaranthus hybridus HOM05D002674 ORTHO05D008041 1.7e-09 66.2 95 45.3
C08p37560 Brassica napus HOM05D002674 ORTHO05D008041 8.5e-09 63.9 75 48.0
Pp3c9_7930 Physcomitrium patens HOM05D002674 ORTHO05D008041 3.2e-08 62.0 104 41.3
Mapoly0061s0038 Marchantia polymorpha HOM05D002674 ORTHO05D008041 7.2e-08 60.8 95 42.1
AagrBONN_evm.TU.Sc2ySwM_362.373 Anthoceros agrestis HOM05D002674 ORTHO05D008041 4.7e-07 58.2 100 40.0
Cre07.g332150 Chlamydomonas reinhardtii HOM05D002674 ORTHO05D008041 8.8e-06 53.9 89 39.3


User provided reference genes

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