Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb346560 Zea mays HOM05D008694 ORTHO05D010635 1.7e-232 808.9 392 100.0
Zm00001eb285670 Zea mays HOM05D008694 ORTHO05D010635 2.9e-75 286.6 411 43.3
Os10g0136200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.4e-71 272.7 363 42.7
Os05g0320100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 6.3e-70 268.9 374 41.4
Os02g0249700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.8e-67 259.6 390 42.8
Os10g0137700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.8e-67 259.6 384 42.4
Os10g0137000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.5e-66 255.8 369 40.4
Os10g0142500 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.3e-59 233.8 389 37.3
Os10g0145200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 8.6e-59 231.9 379 37.5
Os10g0145000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 9.5e-58 228.4 382 37.4
Os10g0145100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.1e-49 200.7 398 34.9
Os11g0166100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.4e-47 193.4 372 36.8
Zm00001eb332480 Zea mays HOM05D008694 ORTHO05D010635 1.1e-45 188.3 369 35.2
Os07g0120200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 6.0e-44 182.6 369 34.1
Os10g0188000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.3e-42 176.4 217 44.7
Os07g0120400 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.6e-42 176.0 378 34.4
Os10g0155300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.7e-41 172.9 368 33.4
Zm00001eb298860 Zea mays HOM05D008694 ORTHO05D010635 1.8e-40 171.0 381 33.1
Os07g0123000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.1e-40 170.2 375 33.6
Os01g0557400 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.3e-38 164.9 387 33.6
Os10g0123200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.4e-37 161.4 123 63.4
Os07g0421000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 6.0e-36 156.0 391 32.0
Os07g0122900 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.3e-35 154.1 369 32.2
Zm00001eb028860 Zea mays HOM05D008694 ORTHO05D010635 3.9e-35 153.3 366 32.8
Os10g0139300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 8.6e-35 152.1 392 30.1
Zm00001eb043870 Zea mays HOM05D008694 ORTHO05D010635 3.1e-32 143.7 383 31.3
Os10g0138000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.5e-31 141.4 160 47.5
Os10g0138300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.8e-30 136.7 419 24.1
Zm00001eb043880 Zea mays HOM05D008694 ORTHO05D010635 3.8e-30 136.7 379 31.9
Os10g0136900 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.1e-29 133.3 186 37.1
Os10g0144800 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.5e-26 124.0 394 28.2
Os10g0136150 Oryza sativa ssp. japonica HOM05D008243 ORTHO05D017094 2.4e-24 117.5 215 34.0
Os08g0299700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.6e-20 103.2 289 32.2
Zm00001eb299080 Zea mays HOM05D062505 ORTHO05D010635 1.3e-19 101.7 421 27.3
Os02g0288000 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D010635 9.0e-16 89.0 318 29.9
Os10g0141600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.2e-15 88.6 216 29.6
Os10g0158700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.5e-15 88.2 281 26.7
Os08g0299600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.8e-14 83.6 155 28.4
Zm00001eb299040 Zea mays HOM05D062505 ORTHO05D010635 6.4e-14 82.8 409 26.4
Os02g0294100 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D036983 1.4e-13 81.6 311 28.9
Os10g0135300 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D298170 9.3e-13 79.0 322 28.0
Zm00001eb042100 Zea mays HOM05D028964 ORTHO05D010635 3.5e-12 77.0 227 32.6
Os01g0509900 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D010635 4.6e-12 76.6 314 26.8
CiPaw.16G106800 Carya illinoinensis HOM05D011226 ORTHO05D014017 7.9e-12 75.9 387 22.0
QL04p012751 Quercus lobata HOM05D002420 ORTHO05D002422 1.0e-11 75.5 326 23.6
Zm00001eb299160 Zea mays HOM05D008694 ORTHO05D010635 3.9e-11 73.6 106 44.3
Lj3C804T1 Lonicera japonica HOM05D000007 ORTHO05D000017 1.1e-10 72.0 314 26.8
Os02g0288925 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D036983 1.5e-10 71.6 142 37.3
QL04p012655 Quercus lobata HOM05D002420 ORTHO05D002422 2.5e-10 70.9 286 23.4
FvH4_3g24880 Fragaria vesca HOM05D000007 ORTHO05D000017 4.3e-10 70.1 253 27.7
FAN11G0961 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.6e-10 69.7 253 27.7
Os06g0250000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.6e-10 69.7 209 28.7
Zm00001eb323830 Zea mays HOM05D010111 ORTHO05D010635 5.6e-10 69.7 234 27.8
MELO3C005495.2 Cucumis melo HOM05D000664 ORTHO05D000491 7.4e-10 69.3 374 23.0
Lj5g0011900 Lotus japonicus HOM05D000007 ORTHO05D000017 1.3e-09 68.6 256 28.9
QL04p013493 Quercus lobata HOM05D002420 ORTHO05D002422 1.6e-09 68.2 291 23.0
arahy.Tifrunner.gnm1.ann1.RH27P0 Arachis hypogaea HOM05D000007 ORTHO05D000017 2.1e-09 67.8 247 29.1
FAN21G3529 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.1e-09 67.8 253 27.7
CsaV3_5G004870 Cucumis sativus L. HOM05D000664 ORTHO05D000491 2.8e-09 67.4 256 28.5
QL04p012695 Quercus lobata HOM05D002420 ORTHO05D002422 2.8e-09 67.4 291 23.0
Lj6C666T13 Lonicera japonica HOM05D000007 ORTHO05D000017 3.7e-09 67.0 248 28.2
QL04p013554 Quercus lobata HOM05D002420 ORTHO05D002422 3.7e-09 67.0 288 23.3
Zm00001eb161470 Zea mays HOM05D028964 ORTHO05D049742 4.8e-09 66.6 158 36.7
PSO732G0517 Papaver somniferum HOM05D000007 ORTHO05D000676 6.2e-09 66.2 329 21.3
QL04p012671 Quercus lobata HOM05D002420 ORTHO05D002422 8.1e-09 65.9 280 23.2
QL04p013429 Quercus lobata HOM05D002420 ORTHO05D002422 8.1e-09 65.9 286 23.1
QL04p013515 Quercus lobata HOM05D002420 ORTHO05D002422 8.1e-09 65.9 280 23.2
Lj5g0027399 Lotus japonicus HOM05D000007 ORTHO05D000039 1.1e-08 65.5 223 25.6
QL04p012713 Quercus lobata HOM05D002420 ORTHO05D002422 1.4e-08 65.1 250 25.2
QL04p013477 Quercus lobata HOM05D002420 ORTHO05D002422 1.4e-08 65.1 250 25.2
Migut.E00090 Erythranthe guttata HOM05D000007 ORTHO05D005385 1.8e-08 64.7 303 23.8
RcHm_v2.0_Chr5g0059211 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-08 64.7 278 27.3
GSVIVG01026445001 Vitis vinifera HOM05D002420 ORTHO05D002422 1.8e-08 64.7 293 24.2
DCAR_023489 Daucus carota HOM05D000007 ORTHO05D000017 2.4e-08 64.3 248 25.8
MD12G1244700 Malus domestica HOM05D007779 ORTHO05D009863 4.0e-08 63.5 139 34.5
MD17G1124300 Malus domestica HOM05D000007 ORTHO05D000017 4.0e-08 63.5 336 23.2
ClCG01G004670 Citrullus lanatus HOM05D000664 ORTHO05D000491 5.3e-08 63.2 249 25.3
RcHm_v2.0_Chr5g0044501 Rosa chinensis HOM05D000007 ORTHO05D000017 5.3e-08 63.2 254 26.4
Os10g0139600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 6.9e-08 62.8 52 67.3
Lj3P654T36 Lonicera japonica HOM05D000007 ORTHO05D000017 9.0e-08 62.4 308 22.4
Os02g0287800 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D010635 1.2e-07 62.0 75 49.3
PSO478G5103 Papaver somniferum HOM05D000007 ORTHO05D000017 1.2e-07 62.0 292 24.7
Phvul.010G162300 Phaseolus vulgaris HOM05D012242 ORTHO05D001155 1.2e-07 62.0 358 20.9
RcHm_v2.0_Chr2g0154611 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-07 62.0 356 24.4
Sabra09G0102700 Salix brachista HOM05D001729 ORTHO05D001155 1.2e-07 62.0 278 25.9
Lj6C667T8 Lonicera japonica HOM05D000007 ORTHO05D000017 1.5e-07 61.6 316 24.4
QL07p003322 Quercus lobata HOM05D000007 ORTHO05D000039 1.5e-07 61.6 290 25.9
Os06g0248300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.0e-07 61.2 189 27.5
PGR004G1919 Punica granatum HOM05D000007 ORTHO05D000017 2.6e-07 60.8 236 25.0
QL08p054586 Quercus lobata HOM05D002420 ORTHO05D002422 2.6e-07 60.8 287 22.6
Zm00001eb236980 Zea mays HOM05D017235 ORTHO05D036983 2.6e-07 60.8 82 46.3
HanXRQChr03g0076041 Helianthus annuus HOM05D000007 ORTHO05D000676 3.4e-07 60.5 263 22.8
QL08p054650 Quercus lobata HOM05D002420 ORTHO05D002422 4.5e-07 60.1 290 23.4
QL08p055137 Quercus lobata HOM05D002420 ORTHO05D002422 4.5e-07 60.1 290 23.8
QL08p054647 Quercus lobata HOM05D002420 ORTHO05D002422 7.6e-07 59.3 290 23.4
QL08p055477 Quercus lobata HOM05D002420 ORTHO05D002422 7.6e-07 59.3 250 24.0
TAR626G1239 Trochodendron aralioides HOM05D000664 ORTHO05D000491 1.7e-06 58.2 252 27.0
Thecc.09G282200 Theobroma cacao HOM05D002420 ORTHO05D002422 2.2e-06 57.8 301 21.9
Os07g0555000 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D299718 2.9e-06 57.4 66 47.0
RcHm_v2.0_Chr2g0154671 Rosa chinensis HOM05D000007 ORTHO05D000017 2.9e-06 57.4 227 24.2
DCAR_020015 Daucus carota HOM05D000007 ORTHO05D000039 4.9e-06 56.6 259 25.9
Medtr8g101580 Medicago truncatula HOM05D000007 ORTHO05D000017 4.9e-06 56.6 137 32.8
arahy.Tifrunner.gnm1.ann1.C2UZEY Arachis hypogaea HOM05D007779 ORTHO05D009863 6.4e-06 56.2 300 23.0
arahy.Tifrunner.gnm1.ann1.DL8VF6 Arachis hypogaea HOM05D007779 ORTHO05D009863 6.4e-06 56.2 301 23.3
Os07g0554500 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D293036 6.4e-06 56.2 101 42.6


User provided reference genes

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