Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 4.8e-168 594.3 289 100.0
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 6.0e-134 481.1 290 78.3
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 5.6e-132 474.6 290 77.2
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.4e-130 469.2 290 74.8
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.9e-130 467.2 290 76.9
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.2e-129 466.8 290 76.2
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 3.4e-129 465.3 290 75.9
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.7e-128 463.0 290 74.8
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 8.4e-128 460.7 290 73.1
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 8.4e-128 460.7 290 73.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 4.2e-127 458.4 290 74.1
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 4.2e-127 458.4 290 73.8
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 7.1e-127 457.6 290 73.8
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 9.2e-127 457.2 304 73.0
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 9.2e-127 457.2 290 74.1
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.1e-126 456.1 290 73.4
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.7e-126 455.7 290 72.8
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 4.6e-126 454.9 290 73.8
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 4.6e-126 454.9 290 74.1
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 4.6e-126 454.9 292 73.3
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.7e-125 453.0 290 72.8
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 3.0e-125 452.2 289 72.0
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 8.7e-125 450.7 290 72.4
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 3.3e-124 448.7 291 71.1
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 7.3e-124 447.6 289 72.3
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.6e-123 446.4 289 72.0
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 3.6e-123 445.3 290 72.4
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 4.7e-123 444.9 290 72.4
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 6.2e-123 444.5 290 72.8
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.1e-122 443.7 290 72.1
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.8e-122 443.0 290 73.4
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 2.4e-122 442.6 290 70.7
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 3.1e-122 442.2 290 71.7
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 3.1e-122 442.2 290 72.1
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 3.1e-122 442.2 292 71.2
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.3e-122 441.4 289 71.3
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 9.0e-122 440.7 290 70.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.2e-121 440.3 290 72.1
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 2.6e-121 439.1 285 73.7
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.4e-121 438.3 290 69.7
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 7.6e-121 437.6 289 70.6
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 9.9e-121 437.2 289 70.9
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.7e-120 436.4 290 71.0
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.2e-120 436.0 290 69.7
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.9e-120 435.6 287 70.0
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.8e-120 435.3 289 72.0
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.8e-120 435.3 290 69.7
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.1e-119 433.7 269 75.1
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.4e-119 433.3 290 70.0
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 3.2e-119 432.2 284 72.9
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 4.2e-119 431.8 289 69.2
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.2e-118 430.3 289 71.6
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.2e-118 430.3 290 70.7
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.1e-118 429.5 289 70.2
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 4.6e-118 428.3 308 68.2
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.0e-117 427.2 291 68.0
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.0e-117 427.2 290 69.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.3e-117 426.8 316 66.5
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.7e-117 426.4 290 69.0
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.0e-117 425.6 285 72.6
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.1e-116 423.7 296 66.6
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 7.3e-116 421.0 290 68.3
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.6e-116 420.6 305 67.9
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.6e-115 418.7 305 67.5
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 4.8e-115 418.3 286 69.9
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 8.1e-115 417.5 300 67.7
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-114 416.8 306 67.6
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 4.0e-114 415.2 289 68.5
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 4.0e-114 415.2 289 68.5
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.0e-114 414.1 306 67.3
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 3.4e-113 412.1 292 64.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 6.4e-112 407.9 269 72.9
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.4e-111 406.0 291 65.6
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.2e-111 405.6 291 64.9
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 3.2e-111 405.6 290 63.4
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.2e-111 405.6 277 69.0
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 9.3e-111 404.1 290 65.5
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 9.3e-111 404.1 300 66.3
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.2e-110 403.7 271 69.4
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.6e-110 403.3 291 65.3
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 3.5e-110 402.1 287 65.9
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.0e-109 400.6 291 63.6
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 3.0e-109 399.1 292 64.0
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 6.7e-109 397.9 291 63.2
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 6.7e-109 397.9 275 68.0
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 8.7e-109 397.5 293 63.5
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.9e-108 396.4 292 63.4
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.9e-108 396.4 292 63.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 4.8e-107 391.7 296 64.9
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.4e-106 389.4 292 65.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.1e-106 389.0 292 62.0
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 3.1e-106 389.0 292 62.0
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 3.1e-106 389.0 292 62.0
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.9e-106 387.9 294 65.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 6.9e-106 387.9 293 64.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.4e-105 385.6 296 61.5
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.5e-105 385.2 294 61.9
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.8e-105 384.8 289 65.4
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 5.8e-105 384.8 294 61.6
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.8e-104 382.1 289 64.0
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.1e-103 380.6 308 59.1
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 5.5e-103 378.3 273 64.5
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 5.5e-103 378.3 227 77.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 9.3e-103 377.5 293 65.5
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 3.0e-101 372.5 309 59.5
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 5.6e-100 368.2 248 71.8
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.1e-99 366.3 292 61.3
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 6.2e-99 364.8 297 60.6
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 3.0e-93 345.9 297 56.6
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 5.7e-92 341.7 247 64.4
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.3e-91 340.5 293 55.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.6e-91 340.1 296 56.1
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.6e-91 340.1 228 69.3
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.7e-91 339.0 258 64.0
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 6.3e-91 338.2 202 78.2
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.2e-88 329.7 201 77.6
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 2.8e-83 312.8 373 47.7
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.0e-80 304.3 289 54.3
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 4.7e-78 295.4 212 67.0
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.6e-70 270.4 236 56.8
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.1e-70 270.0 253 54.9
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.4e-69 267.3 236 55.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.2e-69 265.4 182 70.3
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 9.7e-68 261.2 178 71.3
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.9e-65 251.9 254 53.1
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.5e-63 247.3 247 49.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 4.2e-63 245.7 289 46.0
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.2e-61 238.8 281 44.8
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 5.2e-61 238.8 287 42.5
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 3.2e-55 219.5 227 53.7
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 3.6e-54 216.1 205 55.6
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 2.0e-52 210.3 216 54.2
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.4e-42 176.8 157 58.6
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-41 174.5 240 44.6
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.0e-41 173.7 238 44.5
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 6.6e-40 168.7 109 72.5
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.8e-38 163.3 96 75.0
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.8e-37 160.6 119 62.2
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 4.1e-34 149.4 124 61.3
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 6.6e-32 142.1 99 68.7
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 2.8e-30 136.7 173 43.4
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.6e-28 130.2 238 37.8
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 8.6e-24 115.2 85 63.5
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 5.2e-21 105.9 71 62.0
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.5e-20 104.4 60 80.0
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 6.0e-17 92.4 67 68.7
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 7.8e-17 92.0 45 82.2
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.0e-16 91.7 52 73.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.4e-13 80.5 65 60.0
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.9e-12 75.1 79 53.2
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 1.6e-09 67.8 82 46.3
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 6.6e-08 62.4 32 81.2
CAN.G275.15 Capsicum annuum HOM05D000147 ORTHO05D022185 1.6e-06 57.8 88 36.4
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.1e-06 57.4 38 60.5


User provided reference genes

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