Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 6.6e-141 504.2 290 100.0
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 2.6e-97 359.4 302 73.2
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 3.8e-96 355.5 212 80.7
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 5.0e-96 355.1 219 85.4
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 1.4e-95 353.6 213 78.4
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 2.1e-94 349.7 213 79.8
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.0e-93 347.4 215 79.1
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 3.9e-93 345.5 212 78.8
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.3e-92 342.4 211 79.6
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 4.4e-92 342.0 208 78.8
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.7e-91 340.1 218 75.7
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.8e-91 339.3 211 78.2
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 6.3e-91 338.2 208 78.4
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 2.4e-90 336.3 213 77.0
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 4.1e-90 335.5 213 77.0
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 4.1e-90 335.5 213 76.1
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 9.1e-90 334.3 241 69.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 5.9e-89 331.6 218 73.4
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 7.7e-89 331.3 218 72.5
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 2.9e-88 329.3 213 76.5
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.4e-87 327.0 213 75.6
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.4e-87 327.0 213 75.6
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.5e-87 326.2 213 77.5
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 2.5e-87 326.2 211 74.4
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.5e-87 325.1 228 70.6
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 2.1e-86 323.2 211 73.9
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 3.6e-86 322.4 214 73.4
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 3.6e-86 322.4 214 73.4
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.6e-86 322.4 215 74.4
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 6.1e-86 321.6 214 73.4
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 6.1e-86 321.6 211 73.5
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 7.9e-86 321.2 213 73.7
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.0e-85 320.9 211 74.9
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 6.7e-85 318.2 213 73.2
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.1e-84 317.4 211 74.9
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 2.0e-84 316.6 213 72.8
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 2.6e-84 316.2 217 69.6
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 9.7e-84 314.3 196 76.0
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.2e-83 313.2 213 73.2
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 4.8e-83 312.0 211 72.0
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 6.3e-83 311.6 216 70.4
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.8e-82 310.1 206 73.8
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.4e-82 309.7 209 74.2
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 4.1e-82 308.9 213 71.8
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 5.3e-82 308.5 181 82.3
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 2.6e-81 306.2 214 68.2
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 3.5e-81 305.8 213 70.4
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 3.5e-81 305.8 215 68.8
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 4.5e-81 305.4 214 71.0
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 4.5e-81 305.4 215 70.2
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 5.9e-81 305.1 216 67.1
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 5.9e-81 305.1 212 70.3
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 7.7e-81 304.7 212 72.6
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 1.3e-80 303.9 212 72.2
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 1.7e-80 303.5 212 71.7
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.7e-80 303.5 246 63.8
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.9e-80 302.8 211 71.1
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 3.8e-80 302.4 211 71.6
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.1e-79 300.8 212 68.4
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.1e-79 300.8 214 70.1
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 4.2e-79 298.9 235 66.4
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 7.2e-79 298.1 212 69.8
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.2e-78 297.4 215 68.4
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.2e-78 297.4 213 68.5
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.6e-78 297.0 212 69.3
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.6e-78 297.0 189 76.2
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 2.1e-78 296.6 214 69.6
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 2.7e-78 296.2 212 69.3
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.7e-78 296.2 215 70.2
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 2.7e-78 296.2 212 65.1
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.0e-78 294.7 214 67.8
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.8e-77 293.5 212 68.4
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.8e-77 293.5 213 67.1
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 3.0e-77 292.7 212 67.9
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.0e-77 292.7 212 67.9
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 8.8e-77 291.2 213 68.1
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 2.0e-76 290.0 213 67.1
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.6e-76 289.7 212 67.5
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 9.7e-76 287.7 211 65.9
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.7e-75 287.0 208 67.8
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 2.8e-75 286.2 209 67.0
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 3.7e-75 285.8 215 64.7
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 4.8e-75 285.4 213 63.4
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 6.3e-75 285.0 189 73.5
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 6.3e-75 285.0 181 76.8
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 8.2e-75 284.6 203 68.5
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 3.1e-74 282.7 210 67.1
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 9.1e-74 281.2 237 61.2
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 1.2e-73 280.8 212 67.9
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 2.0e-73 280.0 210 66.7
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 4.5e-73 278.9 151 84.8
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 7.2e-71 271.6 211 66.4
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 7.2e-71 271.6 213 63.4
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.2e-70 270.8 211 64.0
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 3.6e-70 269.2 209 63.2
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 4.0e-69 265.8 179 73.2
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.6e-68 263.1 212 63.2
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 1.3e-67 260.8 204 61.8
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 8.3e-67 258.1 178 69.7
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 3.1e-66 256.1 178 71.9
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 3.8e-64 249.2 215 60.5
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 1.9e-63 246.9 212 58.5
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 6.1e-54 215.3 118 83.1
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 2.0e-52 210.3 153 69.9
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.3e-48 197.6 134 71.6
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 9.5e-47 191.4 208 47.6
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.0e-45 186.0 195 55.4
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 3.7e-43 179.5 145 63.4
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.8e-38 163.3 176 48.3
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 3.4e-28 129.8 94 73.4
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.7e-27 127.5 88 76.1
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.7e-27 127.5 180 43.9
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 2.2e-27 127.1 91 72.5
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 2.2e-27 127.1 108 64.8
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.1e-26 122.9 203 36.5
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.6e-22 110.9 69 75.4
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.7e-19 100.9 84 59.5
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.2e-17 94.7 139 38.8
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 3.0e-16 90.1 106 49.1
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 9.6e-15 85.1 55 74.5
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 8.1e-14 82.0 107 39.3
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 3.2e-10 70.1 61 59.0
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 5.1e-08 62.8 45 71.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 4.3e-07 59.7 138 28.3
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 7.4e-07 58.9 137 29.9
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 4.8e-06 56.2 49 57.1
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 4.8e-06 56.2 39 71.8
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 8.1e-06 55.5 147 29.9


User provided reference genes

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