Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 3.3e-156 555.1 293 100.0
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 2.7e-97 359.4 272 75.0
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 5.1e-64 248.8 191 69.1
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 5.6e-55 218.8 246 54.9
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 6.2e-54 215.3 199 63.3
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 6.2e-54 215.3 206 60.2
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.1e-53 214.5 255 53.3
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.8e-53 213.8 264 52.7
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 3.1e-53 213.0 191 62.3
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 5.3e-53 212.2 264 52.3
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 1.5e-52 210.7 200 61.5
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.0e-52 210.3 245 53.5
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.0e-52 210.3 245 53.9
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 3.4e-52 209.5 195 61.0
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 3.4e-52 209.5 195 61.0
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 5.8e-52 208.8 201 61.7
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 5.8e-52 208.8 208 60.1
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 7.6e-52 208.4 195 61.0
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 9.9e-52 208.0 197 60.4
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.3e-51 207.6 211 59.2
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.7e-51 207.2 264 51.5
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 3.8e-51 206.1 203 60.1
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 4.9e-51 205.7 197 60.9
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 6.4e-51 205.3 248 50.0
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 6.4e-51 205.3 245 52.2
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 8.4e-51 204.9 251 49.8
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 2.4e-50 203.4 205 57.1
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.2e-50 203.0 243 53.1
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 7.1e-50 201.8 199 60.3
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 9.3e-50 201.4 192 62.5
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.2e-49 201.1 204 59.8
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 1.6e-49 200.7 192 62.5
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.1e-49 200.3 187 62.0
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 2.7e-49 199.9 240 52.5
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 6.0e-49 198.7 206 57.8
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 6.0e-49 198.7 193 59.1
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 7.8e-49 198.4 254 50.4
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.0e-48 198.0 233 50.2
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.0e-48 198.0 250 50.8
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 2.3e-48 196.8 186 61.8
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 2.3e-48 196.8 203 57.1
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 3.0e-48 196.4 197 57.4
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 3.9e-48 196.1 263 49.8
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 5.1e-48 195.7 190 58.9
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.6e-48 195.3 193 60.1
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 1.9e-47 193.7 189 60.3
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.5e-47 193.4 193 59.6
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 3.3e-47 193.0 221 57.0
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 3.3e-47 193.0 204 58.3
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 5.6e-47 192.2 265 48.3
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.6e-47 192.2 198 58.1
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 7.3e-47 191.8 192 60.4
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 9.6e-47 191.4 208 55.8
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 9.6e-47 191.4 203 56.2
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 1.3e-46 191.0 223 52.5
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 2.8e-46 189.9 263 48.3
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.8e-46 189.9 205 57.6
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 4.8e-46 189.1 209 56.5
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 4.8e-46 189.1 189 58.2
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 4.8e-46 189.1 179 60.9
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.8e-45 187.2 197 57.4
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.3e-45 185.7 212 56.1
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 9.0e-45 184.9 289 45.7
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 9.0e-45 184.9 189 57.7
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.2e-44 184.5 194 57.7
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.2e-44 184.5 225 53.3
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 1.2e-44 184.5 249 47.0
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.5e-44 184.1 200 55.5
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 5.8e-44 182.2 218 53.2
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 7.6e-44 181.8 173 60.7
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 7.6e-44 181.8 274 46.7
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 9.9e-44 181.4 181 57.5
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 8.4e-43 178.3 267 47.9
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 8.4e-43 178.3 184 57.1
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.1e-42 177.9 189 56.6
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.4e-42 177.6 194 53.6
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 5.4e-42 175.6 200 56.5
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 9.3e-42 174.9 242 47.5
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 9.3e-42 174.9 284 43.3
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 9.3e-42 174.9 189 56.1
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.2e-41 174.5 239 49.0
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.6e-41 174.1 253 47.8
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 1.6e-41 174.1 197 53.8
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.1e-41 173.7 240 49.2
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 2.7e-41 173.3 187 58.8
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 3.5e-41 172.9 200 53.0
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 6.0e-41 172.2 199 54.8
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.0e-40 171.4 194 52.6
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 8.7e-40 168.3 242 47.9
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 1.1e-39 167.9 207 49.3
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.1e-39 167.9 247 46.2
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 2.5e-39 166.8 201 53.2
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 5.6e-39 165.6 194 53.1
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 7.4e-39 165.2 201 52.7
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 8.1e-38 161.8 183 55.2
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 8.1e-38 161.8 183 55.2
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 8.1e-38 161.8 183 55.2
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 2.4e-37 160.2 195 51.3
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.0e-35 154.8 206 48.1
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 6.5e-35 152.1 165 57.6
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 7.1e-34 148.7 202 48.0
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 9.3e-34 148.3 242 45.9
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.6e-33 146.0 167 50.3
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 6.7e-32 142.1 209 48.3
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.5e-31 140.2 184 50.5
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 9.0e-29 131.7 223 43.0
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.5e-28 131.0 168 48.8
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 7.6e-28 128.6 168 48.2
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 4.2e-26 122.9 321 37.4
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 9.3e-26 121.7 152 51.3
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 2.1e-25 120.6 421 30.9
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.9e-24 116.3 206 41.3
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 2.5e-23 113.6 131 54.2
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 2.5e-23 113.6 162 45.7
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.4e-21 107.1 132 51.5
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.1e-21 106.7 181 40.3
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 5.3e-21 105.9 203 39.9
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 6.9e-21 105.5 227 38.8
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.1e-18 98.2 204 37.3
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 4.6e-17 92.8 51 84.3
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.7e-14 84.3 135 45.9
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 2.4e-13 80.5 56 71.4
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 4.1e-13 79.7 139 42.4
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 2.0e-12 77.4 61 59.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 5.9e-12 75.9 130 43.1
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 2.2e-11 73.9 85 49.4
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 1.6e-09 67.8 92 46.7
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.7e-09 66.2 129 41.1
CBR_g33995 Chara braunii HOM05D006128 ORTHO05D007466 9.7e-07 58.5 125 32.8


User provided reference genes

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