Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 5.4e-96 354.4 185 100.0
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 5.8e-82 307.8 276 65.6
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 2.6e-74 282.3 276 60.5
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 9.1e-19 97.8 220 32.7
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.6e-18 97.1 276 28.6
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 5.9e-18 95.1 269 31.6
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 7.7e-18 94.7 266 30.5
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 3.8e-17 92.4 264 29.5
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 6.5e-17 91.7 244 31.1
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 8.5e-17 91.3 252 29.8
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 8.5e-17 91.3 268 30.6
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.1e-16 90.9 260 31.5
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.5e-16 90.5 280 29.3
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 2.5e-16 89.7 268 30.6
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 3.2e-16 89.4 260 29.6
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.2e-16 89.0 269 29.7
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.2e-16 89.0 259 29.3
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 7.2e-16 88.2 264 29.2
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 7.2e-16 88.2 278 29.1
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 9.4e-16 87.8 255 30.2
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 1.2e-15 87.4 276 28.3
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 1.6e-15 87.0 269 29.0
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 1.6e-15 87.0 263 28.5
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 2.1e-15 86.7 276 27.5
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.1e-15 86.7 262 29.0
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 2.1e-15 86.7 252 30.2
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 2.1e-15 86.7 252 30.2
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 2.7e-15 86.3 278 28.1
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.7e-15 86.3 270 28.5
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 2.7e-15 86.3 248 30.2
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 2.7e-15 86.3 263 28.9
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 3.6e-15 85.9 276 28.3
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 4.7e-15 85.5 275 28.4
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 6.1e-15 85.1 280 29.3
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 6.1e-15 85.1 277 28.9
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 6.1e-15 85.1 260 29.6
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 6.1e-15 85.1 264 28.4
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 6.1e-15 85.1 279 28.0
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.0e-14 84.3 276 29.7
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 1.4e-14 84.0 257 29.2
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.4e-14 84.0 255 30.6
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.8e-14 83.6 253 30.4
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 1.8e-14 83.6 250 29.2
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 2.3e-14 83.2 264 27.3
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 3.0e-14 82.8 271 28.0
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 4.0e-14 82.4 277 27.8
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 5.2e-14 82.0 267 27.3
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 5.2e-14 82.0 253 28.1
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 6.8e-14 81.6 267 26.2
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 8.8e-14 81.3 108 45.4
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 8.8e-14 81.3 250 29.2
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 1.2e-13 80.9 248 29.8
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.2e-13 80.9 252 28.2
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.5e-13 80.5 269 26.0
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.5e-13 80.5 272 27.9
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 1.5e-13 80.5 277 28.9
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.0e-13 80.1 274 27.7
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 2.6e-13 79.7 269 26.0
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.6e-13 79.7 251 29.5
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.6e-13 79.7 251 29.5
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 3.4e-13 79.3 266 28.2
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 3.4e-13 79.3 273 29.3
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 4.4e-13 79.0 276 27.2
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 4.4e-13 79.0 108 39.8
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 7.5e-13 78.2 246 28.5
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 7.5e-13 78.2 281 28.5
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 9.8e-13 77.8 105 43.8
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 9.8e-13 77.8 105 43.8
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 9.8e-13 77.8 280 29.6
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.3e-12 77.4 273 29.7
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 1.3e-12 77.4 59 55.9
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 1.7e-12 77.0 259 29.0
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 2.2e-12 76.6 274 28.1
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 2.8e-12 76.3 240 29.6
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.8e-12 76.3 253 28.5
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 3.7e-12 75.9 251 29.1
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 4.8e-12 75.5 270 26.7
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 4.8e-12 75.5 275 28.0
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 6.3e-12 75.1 249 30.5
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 8.3e-12 74.7 104 37.5
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 8.3e-12 74.7 273 27.5
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 8.3e-12 74.7 56 58.9
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 8.3e-12 74.7 266 28.2
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 8.3e-12 74.7 280 26.8
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 1.1e-11 74.3 249 27.7
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.1e-11 74.3 252 26.6
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 1.1e-11 74.3 247 27.5
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 1.1e-11 74.3 70 48.6
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 1.4e-11 73.9 239 28.0
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 1.8e-11 73.6 230 28.7
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 1.8e-11 73.6 230 28.7
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.8e-11 73.6 252 27.0
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 4.1e-11 72.4 241 29.0
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 5.4e-11 72.0 273 27.1
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 7.0e-11 71.6 265 27.2
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 7.0e-11 71.6 266 28.2
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 7.0e-11 71.6 273 27.1
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 7.0e-11 71.6 253 28.1
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 9.1e-11 71.2 273 27.1
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 1.6e-10 70.5 240 27.5
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 1.6e-10 70.5 240 27.5
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.6e-10 70.5 268 26.1
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.6e-10 70.5 280 25.7
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 2.7e-10 69.7 246 27.2
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 3.5e-10 69.3 255 26.3
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 4.5e-10 68.9 241 27.0
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 4.5e-10 68.9 66 47.0
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 4.5e-10 68.9 294 25.5
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 5.9e-10 68.6 51 54.9
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.0e-09 67.8 210 29.5
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 1.3e-09 67.4 56 55.4
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 1.3e-09 67.4 250 27.6
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 2.3e-09 66.6 282 27.0
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 3.8e-09 65.9 278 24.8
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 9.5e-08 61.2 145 40.0
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.2e-07 60.8 319 22.9
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 1.4e-06 57.4 63 41.3
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 5.2e-06 55.5 49 51.0


User provided reference genes

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