Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 2.0e-211 739.6 629 100.0
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 8.4e-48 196.1 659 63.3
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 3.1e-34 151.0 650 59.5
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.9e-20 105.1 294 35.4
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 2.8e-19 101.3 221 36.7
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 4.8e-19 100.5 227 40.5
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 4.8e-19 100.5 218 37.6
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 3.1e-18 97.8 222 38.3
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 6.9e-18 96.7 223 38.6
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 9.0e-18 96.3 225 39.1
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 1.2e-17 95.9 218 38.5
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 1.5e-17 95.5 222 38.3
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.4e-17 94.4 223 37.2
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.5e-17 94.0 223 37.2
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 5.8e-17 93.6 196 38.8
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 5.8e-17 93.6 224 36.2
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 7.6e-17 93.2 218 39.4
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 7.6e-17 93.2 220 39.1
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 1.3e-16 92.4 230 38.7
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 1.7e-16 92.0 226 38.1
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 2.9e-16 91.3 221 37.6
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 3.8e-16 90.9 221 37.6
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 6.5e-16 90.1 223 39.0
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 8.4e-16 89.7 217 40.1
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 1.1e-15 89.4 225 38.2
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 1.1e-15 89.4 221 37.6
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 1.4e-15 89.0 224 37.9
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 2.5e-15 88.2 209 38.3
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 3.2e-15 87.8 216 38.0
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 3.2e-15 87.8 219 37.4
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 4.2e-15 87.4 217 35.9
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 7.1e-15 86.7 222 36.5
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 7.1e-15 86.7 222 35.6
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 1.2e-14 85.9 231 36.8
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.2e-14 85.9 212 39.2
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.6e-14 85.5 598 59.5
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 2.1e-14 85.1 224 36.6
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 4.6e-14 84.0 226 36.3
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 6.0e-14 83.6 216 37.5
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 7.9e-14 83.2 248 32.3
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 7.9e-14 83.2 227 37.9
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 7.9e-14 83.2 227 37.9
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 7.9e-14 83.2 225 39.6
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 7.9e-14 83.2 227 35.2
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 1.0e-13 82.8 231 35.5
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 1.0e-13 82.8 228 37.7
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 1.0e-13 82.8 227 36.1
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 1.0e-13 82.8 223 32.7
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.3e-13 82.4 229 34.1
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.8e-13 82.0 190 37.9
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 2.3e-13 81.6 229 34.1
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 3.0e-13 81.3 249 34.9
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 3.0e-13 81.3 225 36.9
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 3.9e-13 80.9 266 35.0
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 3.9e-13 80.9 240 35.8
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 5.1e-13 80.5 214 35.5
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 6.7e-13 80.1 227 35.7
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 8.7e-13 79.7 222 38.3
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 8.7e-13 79.7 229 33.6
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 1.1e-12 79.3 213 35.7
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 1.1e-12 79.3 242 36.4
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 1.5e-12 79.0 221 33.9
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.9e-12 78.6 221 37.6
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 3.3e-12 77.8 205 37.1
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 4.3e-12 77.4 258 32.6
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 4.3e-12 77.4 200 36.5
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 5.7e-12 77.0 194 37.6
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 7.4e-12 76.6 252 31.3
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 7.4e-12 76.6 150 39.3
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 7.4e-12 76.6 187 35.8
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 7.4e-12 76.6 182 35.2
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 9.7e-12 76.3 221 36.7
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 9.7e-12 76.3 221 36.7
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 9.7e-12 76.3 193 36.3
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 1.3e-11 75.9 227 32.2
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 1.3e-11 75.9 199 34.7
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.6e-11 75.5 206 35.4
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 1.6e-11 75.5 218 33.0
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.2e-11 75.1 197 36.5
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 2.8e-11 74.7 187 36.9
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 2.8e-11 74.7 190 37.9
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 3.7e-11 74.3 196 35.2
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 3.7e-11 74.3 201 33.3
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 4.8e-11 73.9 187 33.2
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 4.8e-11 73.9 182 36.3
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 4.8e-11 73.9 182 36.3
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 4.8e-11 73.9 219 33.8
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 6.3e-11 73.6 213 32.4
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 6.3e-11 73.6 137 40.9
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 6.3e-11 73.6 221 32.6
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 8.2e-11 73.2 216 36.6
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 1.1e-10 72.8 216 36.1
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 1.1e-10 72.8 231 30.3
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.1e-10 72.8 230 37.0
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.1e-10 72.8 204 33.8
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.4e-10 72.4 221 34.8
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.8e-10 72.0 189 33.9
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 3.1e-10 71.2 239 33.9
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 4.1e-10 70.9 221 33.5
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 4.1e-10 70.9 232 31.0
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 4.1e-10 70.9 167 35.9
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 5.3e-10 70.5 222 36.0
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 5.3e-10 70.5 179 34.1
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 6.9e-10 70.1 194 34.5
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 6.9e-10 70.1 140 35.7
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 6.9e-10 70.1 137 38.7
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 6.9e-10 70.1 184 35.9
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 6.9e-10 70.1 221 36.7
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 1.2e-09 69.3 225 36.0
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.5e-09 68.9 222 32.0
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.5e-09 68.9 222 32.0
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 1.5e-09 68.9 602 57.6
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 2.6e-09 68.2 191 33.0
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.6e-09 68.2 229 33.6
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 2.6e-09 68.2 137 36.5
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 2.6e-09 68.2 222 32.4
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 2.6e-09 68.2 182 34.6
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 3.4e-09 67.8 192 34.9
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 4.5e-09 67.4 221 33.9
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 4.5e-09 67.4 206 36.4
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 4.5e-09 67.4 134 35.1
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 5.9e-09 67.0 239 29.7
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 5.9e-09 67.0 194 34.0
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 7.7e-09 66.6 148 40.5
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 7.7e-09 66.6 183 32.8
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 7.7e-09 66.6 220 34.1
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 7.7e-09 66.6 220 34.5
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.0e-08 66.2 144 33.3
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.0e-08 66.2 181 32.6
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.0e-08 66.2 238 28.6
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.0e-08 66.2 238 28.6
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.0e-08 66.2 208 36.1
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.3e-08 65.9 183 31.7
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.3e-08 65.9 182 32.4
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 1.3e-08 65.9 223 34.1
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.7e-08 65.5 185 33.5
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 2.2e-08 65.1 209 33.0
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 5.0e-08 63.9 139 36.7
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 5.0e-08 63.9 182 34.1
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 6.5e-08 63.5 193 33.2
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 6.5e-08 63.5 166 33.1
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 8.5e-08 63.2 127 36.2
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 8.5e-08 63.2 147 36.1
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 1.9e-07 62.0 225 33.3
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 1.9e-07 62.0 142 33.8
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 2.5e-07 61.6 190 34.2
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 7.2e-07 60.1 197 34.5
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 9.4e-07 59.7 238 27.7
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.2e-06 59.3 218 29.8
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 1.6e-06 58.9 176 35.2
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 1.6e-06 58.9 195 31.8
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 2.7e-06 58.2 147 37.4
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 2.7e-06 58.2 55 50.9
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 2.7e-06 58.2 193 33.2
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 3.6e-06 57.8 203 31.5
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 3.6e-06 57.8 47 61.7
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 4.6e-06 57.4 168 35.1
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.6e-06 57.4 222 32.0
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 4.6e-06 57.4 132 38.6
DCAR_020295 Daucus carota HOM05D003548 ORTHO05D004066 7.9e-06 56.6 217 29.0


User provided reference genes

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