Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 1.7e-82 309.3 162 100.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 1.7e-82 309.3 162 100.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 1.7e-82 309.3 162 100.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 1.7e-82 309.3 162 100.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 1.7e-82 309.3 162 100.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 1.7e-82 309.3 162 100.0
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.7e-82 309.3 162 100.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 3.3e-73 278.5 155 95.5
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.9e-49 199.5 114 93.0
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 4.8e-48 194.9 109 94.5
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 9.0e-47 190.7 110 92.7
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 6.9e-39 164.5 113 77.0
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 2.0e-38 162.9 108 80.6
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 7.7e-38 161.0 108 79.6
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 9.4e-36 154.1 88 93.2
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 3.7e-16 89.0 98 54.1
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.7e-16 89.0 119 49.6
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 8.3e-16 87.8 97 53.6
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.4e-15 87.0 99 52.5
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 3.1e-15 85.9 97 52.6
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.0e-15 84.7 99 47.5
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.2e-14 84.0 102 50.0
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.6e-14 83.6 103 49.5
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 2.0e-14 83.2 100 48.0
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 3.5e-14 82.4 102 50.0
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 3.5e-14 82.4 101 50.5
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 3.5e-14 82.4 101 52.5
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.5e-14 82.4 106 50.0
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 5.9e-14 81.6 103 52.4
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 5.9e-14 81.6 102 50.0
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 5.9e-14 81.6 108 51.9
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 5.9e-14 81.6 99 48.5
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.0e-13 80.9 102 51.0
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.0e-13 80.9 102 51.0
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.0e-13 80.9 102 51.0
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.3e-13 80.5 97 48.5
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.7e-13 80.1 102 50.0
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.7e-13 80.1 109 47.7
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 2.2e-13 79.7 101 48.5
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.9e-13 79.3 102 49.0
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 5.0e-13 78.6 125 43.2
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 5.0e-13 78.6 100 50.0
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.0e-13 78.6 99 44.4
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 5.0e-13 78.6 100 50.0
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 6.5e-13 78.2 100 53.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 6.5e-13 78.2 100 49.0
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.1e-12 77.4 103 46.6
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.1e-12 77.4 101 47.5
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.5e-12 77.0 102 47.1
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.5e-12 77.0 102 45.1
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.5e-12 77.0 97 50.5
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.9e-12 76.6 99 44.4
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.9e-12 76.6 101 46.5
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.9e-12 76.6 101 46.5
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 1.9e-12 76.6 101 50.5
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.5e-12 76.3 57 73.7
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 3.2e-12 75.9 105 47.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 7.2e-12 74.7 104 49.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.2e-11 73.9 99 48.5
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.6e-11 73.6 103 45.6
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.6e-11 73.6 101 46.5
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 2.1e-11 73.2 99 44.4
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 2.7e-11 72.8 119 44.5
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 2.7e-11 72.8 103 44.7
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.7e-11 72.8 103 48.5
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 3.6e-11 72.4 103 48.5
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 4.7e-11 72.0 107 44.9
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 4.7e-11 72.0 104 46.2
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 4.7e-11 72.0 103 47.6
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 8.0e-11 71.2 106 48.1
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.0e-10 70.9 101 46.5
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.0e-10 70.9 104 48.1
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.0e-10 70.9 100 47.0
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.4e-10 70.5 105 45.7
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.8e-10 70.1 100 46.0
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 4.0e-10 68.9 100 48.0
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 5.2e-10 68.6 99 48.5
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.2e-10 68.6 99 45.5
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 6.8e-10 68.2 100 45.0
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 8.8e-10 67.8 100 44.0
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.2e-09 67.4 97 44.3
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.5e-09 67.0 97 43.3
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.0e-09 66.6 106 46.2
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 2.0e-09 66.6 100 44.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.6e-09 66.2 98 44.9
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.6e-09 66.2 101 43.6
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.6e-09 66.2 117 41.0
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.6e-09 66.2 117 41.0
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 4.4e-09 65.5 107 46.7
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 7.5e-09 64.7 108 44.4
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.7e-08 63.5 64 51.6
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.7e-08 63.5 105 42.9
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 2.8e-08 62.8 105 42.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 3.7e-08 62.4 104 46.2
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 4.9e-08 62.0 103 42.7
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.1e-07 60.8 99 44.4
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 1.1e-07 60.8 99 44.4
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 9.2e-07 57.8 97 39.2
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.2e-06 57.4 120 41.7
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.2e-06 57.4 102 38.2
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 2.0e-06 56.6 100 37.0
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 5.9e-06 55.1 105 37.1
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 7.7e-06 54.7 96 39.6


User provided reference genes

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